data_3U6W # _model_server_result.job_id L7FNxB6Hm0CZ9SNk7S37Jw _model_server_result.datetime_utc '2024-12-12 11:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":428}' # _entry.id 3U6W # _exptl.entry_id 3U6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.29 _cell.angle_beta 81.26 _cell.angle_gamma 70.16 _cell.entry_id 3U6W _cell.length_a 47.715 _cell.length_b 70.566 _cell.length_c 69.879 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 83 A ASP 81 1_555 C MN MN . A MN 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc2 A NE2 HIS 287 A HIS 285 1_555 C MN MN . A MN 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A NE2 HIS 289 A HIS 287 1_555 C MN MN . A MN 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc4 C MN MN . A MN 426 1_555 D O3 KIV . A KIV 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc5 C MN MN . A MN 426 1_555 D O2 KIV . A KIV 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 B OD2 ASP 83 B ASP 81 1_555 F MN MN . B MN 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 B NE2 HIS 287 B HIS 285 1_555 F MN MN . B MN 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc8 B NE2 HIS 289 B HIS 287 1_555 F MN MN . B MN 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc9 F MN MN . B MN 426 1_555 G O2 KIV . B KIV 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc10 F MN MN . B MN 426 1_555 G O3 KIV . B KIV 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3U6W _atom_sites.fract_transf_matrix[1][1] 0.020958 _atom_sites.fract_transf_matrix[1][2] -0.007561 _atom_sites.fract_transf_matrix[1][3] 0.000159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015065 _atom_sites.fract_transf_matrix[2][3] -0.00748 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 426 1 MN MN . D 3 KIV A 1 427 1 KIV KIV . E 4 GOL A 1 428 1 GOL GOL . F 2 MN B 1 426 2 MN MN . G 3 KIV B 1 427 2 KIV KIV . H 4 GOL B 1 428 2 GOL GOL . I 5 HOH A 1 429 1 HOH HOH . I 5 HOH A 2 430 2 HOH HOH . I 5 HOH A 3 431 3 HOH HOH . I 5 HOH A 4 432 6 HOH HOH . I 5 HOH A 5 433 7 HOH HOH . I 5 HOH A 6 434 10 HOH HOH . I 5 HOH A 7 435 12 HOH HOH . I 5 HOH A 8 436 13 HOH HOH . I 5 HOH A 9 437 15 HOH HOH . I 5 HOH A 10 438 21 HOH HOH . I 5 HOH A 11 439 24 HOH HOH . I 5 HOH A 12 440 30 HOH HOH . I 5 HOH A 13 441 31 HOH HOH . I 5 HOH A 14 442 32 HOH HOH . I 5 HOH A 15 443 35 HOH HOH . I 5 HOH A 16 444 36 HOH HOH . I 5 HOH A 17 445 37 HOH HOH . I 5 HOH A 18 446 38 HOH HOH . I 5 HOH A 19 447 39 HOH HOH . I 5 HOH A 20 448 40 HOH HOH . I 5 HOH A 21 449 43 HOH HOH . I 5 HOH A 22 450 44 HOH HOH . I 5 HOH A 23 451 46 HOH HOH . I 5 HOH A 24 452 47 HOH HOH . I 5 HOH A 25 453 52 HOH HOH . I 5 HOH A 26 454 54 HOH HOH . I 5 HOH A 27 455 55 HOH HOH . I 5 HOH A 28 456 56 HOH HOH . I 5 HOH A 29 457 57 HOH HOH . I 5 HOH A 30 458 58 HOH HOH . I 5 HOH A 31 459 59 HOH HOH . I 5 HOH A 32 460 60 HOH HOH . I 5 HOH A 33 461 64 HOH HOH . I 5 HOH A 34 462 65 HOH HOH . I 5 HOH A 35 463 67 HOH HOH . I 5 HOH A 36 464 68 HOH HOH . I 5 HOH A 37 465 70 HOH HOH . I 5 HOH A 38 466 71 HOH HOH . I 5 HOH A 39 467 73 HOH HOH . I 5 HOH A 40 468 74 HOH HOH . I 5 HOH A 41 469 77 HOH HOH . I 5 HOH A 42 470 81 HOH HOH . I 5 HOH A 43 471 83 HOH HOH . I 5 HOH A 44 472 84 HOH HOH . I 5 HOH A 45 473 86 HOH HOH . I 5 HOH A 46 474 88 HOH HOH . I 5 HOH A 47 475 89 HOH HOH . I 5 HOH A 48 476 93 HOH HOH . I 5 HOH A 49 477 100 HOH HOH . I 5 HOH A 50 478 102 HOH HOH . I 5 HOH A 51 479 105 HOH HOH . I 5 HOH A 52 480 109 HOH HOH . I 5 HOH A 53 481 112 HOH HOH . I 5 HOH A 54 482 114 HOH HOH . I 5 HOH A 55 483 121 HOH HOH . I 5 HOH A 56 484 122 HOH HOH . I 5 HOH A 57 485 123 HOH HOH . I 5 HOH A 58 486 126 HOH HOH . I 5 HOH A 59 487 130 HOH HOH . I 5 HOH A 60 488 132 HOH HOH . I 5 HOH A 61 489 133 HOH HOH . I 5 HOH A 62 490 134 HOH HOH . I 5 HOH A 63 491 141 HOH HOH . I 5 HOH A 64 492 142 HOH HOH . I 5 HOH A 65 493 145 HOH HOH . I 5 HOH A 66 494 146 HOH HOH . I 5 HOH A 67 495 149 HOH HOH . I 5 HOH A 68 496 151 HOH HOH . I 5 HOH A 69 497 154 HOH HOH . I 5 HOH A 70 498 157 HOH HOH . I 5 HOH A 71 499 158 HOH HOH . J 5 HOH B 1 429 4 HOH HOH . J 5 HOH B 2 430 5 HOH HOH . J 5 HOH B 3 431 8 HOH HOH . J 5 HOH B 4 432 9 HOH HOH . J 5 HOH B 5 433 11 HOH HOH . J 5 HOH B 6 434 14 HOH HOH . J 5 HOH B 7 435 16 HOH HOH . J 5 HOH B 8 436 17 HOH HOH . J 5 HOH B 9 437 18 HOH HOH . J 5 HOH B 10 438 19 HOH HOH . J 5 HOH B 11 439 20 HOH HOH . J 5 HOH B 12 440 22 HOH HOH . J 5 HOH B 13 441 23 HOH HOH . J 5 HOH B 14 442 25 HOH HOH . J 5 HOH B 15 443 26 HOH HOH . J 5 HOH B 16 444 27 HOH HOH . J 5 HOH B 17 445 28 HOH HOH . J 5 HOH B 18 446 29 HOH HOH . J 5 HOH B 19 447 33 HOH HOH . J 5 HOH B 20 448 34 HOH HOH . J 5 HOH B 21 449 41 HOH HOH . J 5 HOH B 22 450 42 HOH HOH . J 5 HOH B 23 451 45 HOH HOH . J 5 HOH B 24 452 48 HOH HOH . J 5 HOH B 25 453 49 HOH HOH . J 5 HOH B 26 454 50 HOH HOH . J 5 HOH B 27 455 51 HOH HOH . J 5 HOH B 28 456 53 HOH HOH . J 5 HOH B 29 457 61 HOH HOH . J 5 HOH B 30 458 62 HOH HOH . J 5 HOH B 31 459 63 HOH HOH . J 5 HOH B 32 460 66 HOH HOH . J 5 HOH B 33 461 69 HOH HOH . J 5 HOH B 34 462 72 HOH HOH . J 5 HOH B 35 463 75 HOH HOH . J 5 HOH B 36 464 76 HOH HOH . J 5 HOH B 37 465 78 HOH HOH . J 5 HOH B 38 466 79 HOH HOH . J 5 HOH B 39 467 80 HOH HOH . J 5 HOH B 40 468 82 HOH HOH . J 5 HOH B 41 469 85 HOH HOH . J 5 HOH B 42 470 87 HOH HOH . J 5 HOH B 43 471 90 HOH HOH . J 5 HOH B 44 472 91 HOH HOH . J 5 HOH B 45 473 92 HOH HOH . J 5 HOH B 46 474 94 HOH HOH . J 5 HOH B 47 475 95 HOH HOH . J 5 HOH B 48 476 96 HOH HOH . J 5 HOH B 49 477 97 HOH HOH . J 5 HOH B 50 478 98 HOH HOH . J 5 HOH B 51 479 99 HOH HOH . J 5 HOH B 52 480 101 HOH HOH . J 5 HOH B 53 481 103 HOH HOH . J 5 HOH B 54 482 104 HOH HOH . J 5 HOH B 55 483 106 HOH HOH . J 5 HOH B 56 484 107 HOH HOH . J 5 HOH B 57 485 108 HOH HOH . J 5 HOH B 58 486 110 HOH HOH . J 5 HOH B 59 487 111 HOH HOH . J 5 HOH B 60 488 113 HOH HOH . J 5 HOH B 61 489 115 HOH HOH . J 5 HOH B 62 490 116 HOH HOH . J 5 HOH B 63 491 117 HOH HOH . J 5 HOH B 64 492 118 HOH HOH . J 5 HOH B 65 493 119 HOH HOH . J 5 HOH B 66 494 120 HOH HOH . J 5 HOH B 67 495 124 HOH HOH . J 5 HOH B 68 496 125 HOH HOH . J 5 HOH B 69 497 127 HOH HOH . J 5 HOH B 70 498 128 HOH HOH . J 5 HOH B 71 499 129 HOH HOH . J 5 HOH B 72 500 131 HOH HOH . J 5 HOH B 73 501 135 HOH HOH . J 5 HOH B 74 502 136 HOH HOH . J 5 HOH B 75 503 137 HOH HOH . J 5 HOH B 76 504 138 HOH HOH . J 5 HOH B 77 505 139 HOH HOH . J 5 HOH B 78 506 140 HOH HOH . J 5 HOH B 79 507 143 HOH HOH . J 5 HOH B 80 508 144 HOH HOH . J 5 HOH B 81 509 147 HOH HOH . J 5 HOH B 82 510 148 HOH HOH . J 5 HOH B 83 511 150 HOH HOH . J 5 HOH B 84 512 152 HOH HOH . J 5 HOH B 85 513 153 HOH HOH . J 5 HOH B 86 514 155 HOH HOH . J 5 HOH B 87 515 156 HOH HOH . J 5 HOH B 88 516 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -36.759 -37.06 -29.176 1 17.45 ? C1 GOL 428 A 1 HETATM 2 O O1 GOL . . . E 4 -36.527 -36.658 -30.52 1 16.82 ? O1 GOL 428 A 1 HETATM 3 C C2 GOL . . . E 4 -37.48 -38.409 -29.156 1 19.87 ? C2 GOL 428 A 1 HETATM 4 O O2 GOL . . . E 4 -36.49 -39.42 -29.236 1 21.1 ? O2 GOL 428 A 1 HETATM 5 C C3 GOL . . . E 4 -38.408 -38.63 -27.934 1 20.39 ? C3 GOL 428 A 1 HETATM 6 O O3 GOL . . . E 4 -38.634 -37.466 -27.159 1 21 ? O3 GOL 428 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 59 _model_server_stats.create_model_time_ms 129 _model_server_stats.query_time_ms 743 _model_server_stats.encode_time_ms 70 _model_server_stats.element_count 6 #