data_3U6Y
#
_model_server_result.job_id            0bW4_HdOIMlGS-6J9c9Hww 
_model_server_result.datetime_utc      '2024-11-27 17:53:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u6y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":103}' 
#
_entry.id    3U6Y 
#
_exptl.entry_id    3U6Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U6Y 
_cell.length_a            33.556 
_cell.length_b            74.29 
_cell.length_c            88.198 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U6Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 B SG CYS 3 C CYS 3 1_555 B SG CYS 94 C CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
hydrog 'DC-DG PAIR' hydrog1 C O2 DC 2 D DC 2 1_555 D N2 DG 5 E DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 C N1 DG 3 D DG 3 1_555 D N3 DC 4 E DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 C N2 DG 3 D DG 3 1_555 D O2 DC 4 E DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 C O6 DG 3 D DG 3 1_555 D N4 DC 4 E DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 C N1 DG 4 D DG 4 1_555 D N3 DC 3 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 C N2 DG 4 D DG 4 1_555 D O2 DC 3 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 C O6 DG 4 D DG 4 1_555 D N4 DC 3 E DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 C N3 DC 5 D DC 5 1_555 D N1 DG 2 E DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 C N4 DC 5 D DC 5 1_555 D O6 DG 2 E DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 C O2 DC 5 D DC 5 1_555 D N2 DG 2 E DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 313 n n 
P O2 PO4 sing 314 n n 
P O3 PO4 sing 315 n n 
P O4 PO4 sing 316 n n 
#
_atom_sites.entry_id                     3U6Y 
_atom_sites.fract_transf_matrix[1][1]    0.029801 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013461 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011338 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 PO4 A 1 103 103 PO4 PO4 . 
F 5 HOH A 1 104 104 HOH HOH . 
F 5 HOH A 2 105 105 HOH HOH . 
F 5 HOH A 3 106 106 HOH HOH . 
F 5 HOH A 4 107 107 HOH HOH . 
F 5 HOH A 5 108 108 HOH HOH . 
F 5 HOH A 6 109 109 HOH HOH . 
F 5 HOH A 7 110 110 HOH HOH . 
F 5 HOH A 8 111 111 HOH HOH . 
F 5 HOH A 9 112 112 HOH HOH . 
F 5 HOH A 10 113 113 HOH HOH . 
F 5 HOH A 11 114 114 HOH HOH . 
F 5 HOH A 12 115 115 HOH HOH . 
F 5 HOH A 13 116 116 HOH HOH . 
F 5 HOH A 14 117 117 HOH HOH . 
F 5 HOH A 15 118 118 HOH HOH . 
F 5 HOH A 16 119 119 HOH HOH . 
F 5 HOH A 17 120 120 HOH HOH . 
F 5 HOH A 18 121 121 HOH HOH . 
F 5 HOH A 19 122 122 HOH HOH . 
F 5 HOH A 20 123 123 HOH HOH . 
F 5 HOH A 21 124 124 HOH HOH . 
F 5 HOH A 22 125 125 HOH HOH . 
F 5 HOH A 23 126 126 HOH HOH . 
F 5 HOH A 24 127 127 HOH HOH . 
F 5 HOH A 25 128 128 HOH HOH . 
F 5 HOH A 26 129 129 HOH HOH . 
F 5 HOH A 27 130 130 HOH HOH . 
F 5 HOH A 28 131 131 HOH HOH . 
F 5 HOH A 29 132 132 HOH HOH . 
F 5 HOH A 30 133 133 HOH HOH . 
F 5 HOH A 31 134 134 HOH HOH . 
F 5 HOH A 32 135 135 HOH HOH . 
F 5 HOH A 33 136 136 HOH HOH . 
F 5 HOH A 34 137 137 HOH HOH . 
F 5 HOH A 35 138 138 HOH HOH . 
F 5 HOH A 36 139 139 HOH HOH . 
F 5 HOH A 37 140 140 HOH HOH . 
F 5 HOH A 38 141 141 HOH HOH . 
F 5 HOH A 39 142 142 HOH HOH . 
F 5 HOH A 40 143 143 HOH HOH . 
F 5 HOH A 41 144 144 HOH HOH . 
F 5 HOH A 42 145 145 HOH HOH . 
F 5 HOH A 43 146 146 HOH HOH . 
F 5 HOH A 44 147 147 HOH HOH . 
F 5 HOH A 45 148 148 HOH HOH . 
F 5 HOH A 46 149 149 HOH HOH . 
F 5 HOH A 47 150 150 HOH HOH . 
F 5 HOH A 48 151 151 HOH HOH . 
F 5 HOH A 49 152 152 HOH HOH . 
F 5 HOH A 50 153 153 HOH HOH . 
F 5 HOH A 51 154 154 HOH HOH . 
F 5 HOH A 52 155 155 HOH HOH . 
F 5 HOH A 53 156 156 HOH HOH . 
F 5 HOH A 54 157 157 HOH HOH . 
F 5 HOH A 55 158 158 HOH HOH . 
F 5 HOH A 56 159 159 HOH HOH . 
F 5 HOH A 57 160 160 HOH HOH . 
F 5 HOH A 58 161 161 HOH HOH . 
F 5 HOH A 59 162 162 HOH HOH . 
F 5 HOH A 60 163 163 HOH HOH . 
F 5 HOH A 61 164 164 HOH HOH . 
F 5 HOH A 62 165 165 HOH HOH . 
F 5 HOH A 63 166 166 HOH HOH . 
F 5 HOH A 64 167 167 HOH HOH . 
F 5 HOH A 65 168 168 HOH HOH . 
F 5 HOH A 66 169 169 HOH HOH . 
F 5 HOH A 67 170 170 HOH HOH . 
F 5 HOH A 68 171 171 HOH HOH . 
F 5 HOH A 69 172 172 HOH HOH . 
F 5 HOH A 70 173 173 HOH HOH . 
F 5 HOH A 71 174 174 HOH HOH . 
F 5 HOH A 72 175 175 HOH HOH . 
F 5 HOH A 73 176 176 HOH HOH . 
F 5 HOH A 74 177 177 HOH HOH . 
F 5 HOH A 75 178 178 HOH HOH . 
F 5 HOH A 76 179 179 HOH HOH . 
F 5 HOH A 77 180 180 HOH HOH . 
F 5 HOH A 78 181 181 HOH HOH . 
F 5 HOH A 79 182 182 HOH HOH . 
F 5 HOH A 80 183 183 HOH HOH . 
F 5 HOH A 81 184 184 HOH HOH . 
F 5 HOH A 82 185 185 HOH HOH . 
F 5 HOH A 83 186 186 HOH HOH . 
F 5 HOH A 84 187 187 HOH HOH . 
F 5 HOH A 85 188 188 HOH HOH . 
F 5 HOH A 86 189 189 HOH HOH . 
F 5 HOH A 87 190 190 HOH HOH . 
F 5 HOH A 88 193 193 HOH HOH . 
F 5 HOH A 89 194 194 HOH HOH . 
G 5 HOH C 1 103 103 HOH HOH . 
G 5 HOH C 2 104 104 HOH HOH . 
G 5 HOH C 3 105 105 HOH HOH . 
G 5 HOH C 4 106 106 HOH HOH . 
G 5 HOH C 5 107 107 HOH HOH . 
G 5 HOH C 6 108 108 HOH HOH . 
G 5 HOH C 7 109 109 HOH HOH . 
G 5 HOH C 8 110 110 HOH HOH . 
G 5 HOH C 9 111 111 HOH HOH . 
G 5 HOH C 10 112 112 HOH HOH . 
G 5 HOH C 11 113 113 HOH HOH . 
G 5 HOH C 12 114 114 HOH HOH . 
G 5 HOH C 13 115 115 HOH HOH . 
G 5 HOH C 14 117 117 HOH HOH . 
G 5 HOH C 15 118 118 HOH HOH . 
G 5 HOH C 16 119 119 HOH HOH . 
G 5 HOH C 17 120 120 HOH HOH . 
G 5 HOH C 18 121 121 HOH HOH . 
G 5 HOH C 19 122 122 HOH HOH . 
G 5 HOH C 20 123 123 HOH HOH . 
G 5 HOH C 21 124 124 HOH HOH . 
G 5 HOH C 22 125 125 HOH HOH . 
G 5 HOH C 23 126 126 HOH HOH . 
G 5 HOH C 24 128 128 HOH HOH . 
G 5 HOH C 25 129 129 HOH HOH . 
G 5 HOH C 26 130 130 HOH HOH . 
G 5 HOH C 27 131 131 HOH HOH . 
G 5 HOH C 28 132 132 HOH HOH . 
G 5 HOH C 29 133 133 HOH HOH . 
G 5 HOH C 30 135 135 HOH HOH . 
G 5 HOH C 31 136 136 HOH HOH . 
G 5 HOH C 32 137 137 HOH HOH . 
G 5 HOH C 33 138 138 HOH HOH . 
G 5 HOH C 34 139 139 HOH HOH . 
G 5 HOH C 35 140 140 HOH HOH . 
G 5 HOH C 36 141 141 HOH HOH . 
G 5 HOH C 37 142 142 HOH HOH . 
G 5 HOH C 38 143 143 HOH HOH . 
G 5 HOH C 39 145 145 HOH HOH . 
G 5 HOH C 40 146 146 HOH HOH . 
G 5 HOH C 41 147 147 HOH HOH . 
G 5 HOH C 42 148 148 HOH HOH . 
G 5 HOH C 43 149 149 HOH HOH . 
G 5 HOH C 44 150 150 HOH HOH . 
G 5 HOH C 45 151 151 HOH HOH . 
G 5 HOH C 46 152 152 HOH HOH . 
G 5 HOH C 47 153 153 HOH HOH . 
G 5 HOH C 48 154 154 HOH HOH . 
G 5 HOH C 49 155 155 HOH HOH . 
G 5 HOH C 50 156 156 HOH HOH . 
G 5 HOH C 51 157 157 HOH HOH . 
G 5 HOH C 52 158 158 HOH HOH . 
G 5 HOH C 53 159 159 HOH HOH . 
G 5 HOH C 54 160 160 HOH HOH . 
G 5 HOH C 55 161 161 HOH HOH . 
G 5 HOH C 56 162 162 HOH HOH . 
G 5 HOH C 57 163 163 HOH HOH . 
G 5 HOH C 58 164 164 HOH HOH . 
G 5 HOH C 59 165 165 HOH HOH . 
G 5 HOH C 60 166 166 HOH HOH . 
G 5 HOH C 61 167 167 HOH HOH . 
G 5 HOH C 62 174 174 HOH HOH . 
G 5 HOH C 63 175 175 HOH HOH . 
G 5 HOH C 64 178 178 HOH HOH . 
G 5 HOH C 65 181 181 HOH HOH . 
G 5 HOH C 66 182 182 HOH HOH . 
G 5 HOH C 67 183 183 HOH HOH . 
G 5 HOH C 68 186 186 HOH HOH . 
G 5 HOH C 69 188 188 HOH HOH . 
G 5 HOH C 70 189 189 HOH HOH . 
G 5 HOH C 71 190 190 HOH HOH . 
G 5 HOH C 72 191 191 HOH HOH . 
G 5 HOH C 73 192 192 HOH HOH . 
G 5 HOH C 74 195 195 HOH HOH . 
H 5 HOH D 1 6 6 HOH HOH . 
H 5 HOH D 2 36 36 HOH HOH . 
H 5 HOH D 3 92 92 HOH HOH . 
H 5 HOH D 4 99 99 HOH HOH . 
H 5 HOH D 5 104 104 HOH HOH . 
H 5 HOH D 6 125 125 HOH HOH . 
H 5 HOH D 7 129 129 HOH HOH . 
H 5 HOH D 8 139 139 HOH HOH . 
H 5 HOH D 9 140 140 HOH HOH . 
H 5 HOH D 10 155 155 HOH HOH . 
H 5 HOH D 11 164 164 HOH HOH . 
H 5 HOH D 12 166 166 HOH HOH . 
H 5 HOH D 13 185 185 HOH HOH . 
I 5 HOH E 1 82 82 HOH HOH . 
I 5 HOH E 2 120 120 HOH HOH . 
I 5 HOH E 3 126 126 HOH HOH . 
I 5 HOH E 4 150 150 HOH HOH . 
I 5 HOH E 5 171 171 HOH HOH . 
I 5 HOH E 6 172 172 HOH HOH . 
I 5 HOH E 7 176 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . E 4 5.613 -15.975 -6.759 1 49.73 ? P PO4 103 A 1 
HETATM 2 O O1 PO4 . . . E 4 6.949 -15.949 -7.408 1 51.06 ? O1 PO4 103 A 1 
HETATM 3 O O2 PO4 . . . E 4 5.766 -15.758 -5.297 1 51.45 ? O2 PO4 103 A 1 
HETATM 4 O O3 PO4 . . . E 4 4.765 -14.895 -7.336 1 48.44 ? O3 PO4 103 A 1 
HETATM 5 O O4 PO4 . . . E 4 4.971 -17.293 -6.989 1 49.04 ? O4 PO4 103 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#