data_3U6Z # _model_server_result.job_id UXi6lvUU-WTrTvrGsz2C8g _model_server_result.datetime_utc '2024-11-13 13:32:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u6z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":247}' # _entry.id 3U6Z # _exptl.entry_id 3U6Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U6Z _cell.length_a 130.207 _cell.length_b 130.207 _cell.length_c 39.831 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U6Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.464 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 253 n n C1 O1 NAG sing 254 n n C1 O5 NAG sing 255 n n C1 H1 NAG sing 256 n n C2 C3 NAG sing 257 n n C2 N2 NAG sing 258 n n C2 H2 NAG sing 259 n n C3 C4 NAG sing 260 n n C3 O3 NAG sing 261 n n C3 H3 NAG sing 262 n n C4 C5 NAG sing 263 n n C4 O4 NAG sing 264 n n C4 H4 NAG sing 265 n n C5 C6 NAG sing 266 n n C5 O5 NAG sing 267 n n C5 H5 NAG sing 268 n n C6 O6 NAG sing 269 n n C6 H61 NAG sing 270 n n C6 H62 NAG sing 271 n n C7 C8 NAG sing 272 n n C7 N2 NAG sing 273 n n C7 O7 NAG doub 274 n n C8 H81 NAG sing 275 n n C8 H82 NAG sing 276 n n C8 H83 NAG sing 277 n n N2 HN2 NAG sing 278 n n O1 HO1 NAG sing 279 n n O3 HO3 NAG sing 280 n n O4 HO4 NAG sing 281 n n O6 HO6 NAG sing 282 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3U6Z _atom_sites.fract_transf_matrix[1][1] 0.00768 _atom_sites.fract_transf_matrix[1][2] 0.004434 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 247 247 NAG NAG . C 3 ADE A 1 248 248 ADE ADE . D 4 GOL A 1 249 249 GOL GOL . E 5 HOH A 1 250 1 HOH HOH . E 5 HOH A 2 251 2 HOH HOH . E 5 HOH A 3 252 3 HOH HOH . E 5 HOH A 4 253 4 HOH HOH . E 5 HOH A 5 254 5 HOH HOH . E 5 HOH A 6 255 6 HOH HOH . E 5 HOH A 7 256 7 HOH HOH . E 5 HOH A 8 257 8 HOH HOH . E 5 HOH A 9 258 9 HOH HOH . E 5 HOH A 10 259 10 HOH HOH . E 5 HOH A 11 260 11 HOH HOH . E 5 HOH A 12 261 12 HOH HOH . E 5 HOH A 13 262 13 HOH HOH . E 5 HOH A 14 263 14 HOH HOH . E 5 HOH A 15 264 15 HOH HOH . E 5 HOH A 16 265 16 HOH HOH . E 5 HOH A 17 266 17 HOH HOH . E 5 HOH A 18 267 18 HOH HOH . E 5 HOH A 19 268 19 HOH HOH . E 5 HOH A 20 269 20 HOH HOH . E 5 HOH A 21 270 21 HOH HOH . E 5 HOH A 22 271 22 HOH HOH . E 5 HOH A 23 272 23 HOH HOH . E 5 HOH A 24 273 24 HOH HOH . E 5 HOH A 25 274 25 HOH HOH . E 5 HOH A 26 275 26 HOH HOH . E 5 HOH A 27 276 27 HOH HOH . E 5 HOH A 28 277 28 HOH HOH . E 5 HOH A 29 278 29 HOH HOH . E 5 HOH A 30 279 30 HOH HOH . E 5 HOH A 31 280 31 HOH HOH . E 5 HOH A 32 281 32 HOH HOH . E 5 HOH A 33 282 33 HOH HOH . E 5 HOH A 34 283 34 HOH HOH . E 5 HOH A 35 284 35 HOH HOH . E 5 HOH A 36 285 36 HOH HOH . E 5 HOH A 37 286 37 HOH HOH . E 5 HOH A 38 287 38 HOH HOH . E 5 HOH A 39 288 39 HOH HOH . E 5 HOH A 40 289 40 HOH HOH . E 5 HOH A 41 290 41 HOH HOH . E 5 HOH A 42 291 42 HOH HOH . E 5 HOH A 43 292 43 HOH HOH . E 5 HOH A 44 293 44 HOH HOH . E 5 HOH A 45 294 45 HOH HOH . E 5 HOH A 46 295 46 HOH HOH . E 5 HOH A 47 296 47 HOH HOH . E 5 HOH A 48 297 48 HOH HOH . E 5 HOH A 49 298 49 HOH HOH . E 5 HOH A 50 299 50 HOH HOH . E 5 HOH A 51 300 51 HOH HOH . E 5 HOH A 52 301 52 HOH HOH . E 5 HOH A 53 302 53 HOH HOH . E 5 HOH A 54 303 54 HOH HOH . E 5 HOH A 55 304 55 HOH HOH . E 5 HOH A 56 305 56 HOH HOH . E 5 HOH A 57 306 57 HOH HOH . E 5 HOH A 58 307 58 HOH HOH . E 5 HOH A 59 308 59 HOH HOH . E 5 HOH A 60 309 60 HOH HOH . E 5 HOH A 61 310 61 HOH HOH . E 5 HOH A 62 311 62 HOH HOH . E 5 HOH A 63 312 63 HOH HOH . E 5 HOH A 64 313 64 HOH HOH . E 5 HOH A 65 314 65 HOH HOH . E 5 HOH A 66 315 66 HOH HOH . E 5 HOH A 67 316 67 HOH HOH . E 5 HOH A 68 317 68 HOH HOH . E 5 HOH A 69 318 69 HOH HOH . E 5 HOH A 70 319 70 HOH HOH . E 5 HOH A 71 320 71 HOH HOH . E 5 HOH A 72 321 72 HOH HOH . E 5 HOH A 73 322 73 HOH HOH . E 5 HOH A 74 323 74 HOH HOH . E 5 HOH A 75 324 75 HOH HOH . E 5 HOH A 76 325 76 HOH HOH . E 5 HOH A 77 326 77 HOH HOH . E 5 HOH A 78 327 78 HOH HOH . E 5 HOH A 79 328 80 HOH HOH . E 5 HOH A 80 329 81 HOH HOH . E 5 HOH A 81 330 82 HOH HOH . E 5 HOH A 82 331 83 HOH HOH . E 5 HOH A 83 332 84 HOH HOH . E 5 HOH A 84 333 85 HOH HOH . E 5 HOH A 85 334 86 HOH HOH . E 5 HOH A 86 335 87 HOH HOH . E 5 HOH A 87 336 88 HOH HOH . E 5 HOH A 88 337 89 HOH HOH . E 5 HOH A 89 338 90 HOH HOH . E 5 HOH A 90 339 91 HOH HOH . E 5 HOH A 91 340 92 HOH HOH . E 5 HOH A 92 341 93 HOH HOH . E 5 HOH A 93 342 94 HOH HOH . E 5 HOH A 94 343 95 HOH HOH . E 5 HOH A 95 344 96 HOH HOH . E 5 HOH A 96 345 97 HOH HOH . E 5 HOH A 97 346 98 HOH HOH . E 5 HOH A 98 347 99 HOH HOH . E 5 HOH A 99 348 100 HOH HOH . E 5 HOH A 100 349 101 HOH HOH . E 5 HOH A 101 350 102 HOH HOH . E 5 HOH A 102 351 103 HOH HOH . E 5 HOH A 103 352 104 HOH HOH . E 5 HOH A 104 353 106 HOH HOH . E 5 HOH A 105 354 107 HOH HOH . E 5 HOH A 106 355 108 HOH HOH . E 5 HOH A 107 356 109 HOH HOH . E 5 HOH A 108 357 111 HOH HOH . E 5 HOH A 109 358 112 HOH HOH . E 5 HOH A 110 359 113 HOH HOH . E 5 HOH A 111 360 114 HOH HOH . E 5 HOH A 112 361 115 HOH HOH . E 5 HOH A 113 362 116 HOH HOH . E 5 HOH A 114 363 117 HOH HOH . E 5 HOH A 115 364 118 HOH HOH . E 5 HOH A 116 365 119 HOH HOH . E 5 HOH A 117 366 120 HOH HOH . E 5 HOH A 118 367 121 HOH HOH . E 5 HOH A 119 368 124 HOH HOH . E 5 HOH A 120 369 126 HOH HOH . E 5 HOH A 121 370 127 HOH HOH . E 5 HOH A 122 371 128 HOH HOH . E 5 HOH A 123 372 129 HOH HOH . E 5 HOH A 124 373 131 HOH HOH . E 5 HOH A 125 374 132 HOH HOH . E 5 HOH A 126 375 133 HOH HOH . E 5 HOH A 127 376 135 HOH HOH . E 5 HOH A 128 377 136 HOH HOH . E 5 HOH A 129 378 138 HOH HOH . E 5 HOH A 130 379 139 HOH HOH . E 5 HOH A 131 380 140 HOH HOH . E 5 HOH A 132 381 141 HOH HOH . E 5 HOH A 133 382 145 HOH HOH . E 5 HOH A 134 383 146 HOH HOH . E 5 HOH A 135 384 151 HOH HOH . E 5 HOH A 136 385 152 HOH HOH . E 5 HOH A 137 386 154 HOH HOH . E 5 HOH A 138 387 157 HOH HOH . E 5 HOH A 139 388 158 HOH HOH . E 5 HOH A 140 389 159 HOH HOH . E 5 HOH A 141 390 160 HOH HOH . E 5 HOH A 142 391 161 HOH HOH . E 5 HOH A 143 392 162 HOH HOH . E 5 HOH A 144 393 163 HOH HOH . E 5 HOH A 145 394 164 HOH HOH . E 5 HOH A 146 395 171 HOH HOH . E 5 HOH A 147 396 172 HOH HOH . E 5 HOH A 148 397 173 HOH HOH . E 5 HOH A 149 398 174 HOH HOH . E 5 HOH A 150 399 175 HOH HOH . E 5 HOH A 151 400 176 HOH HOH . E 5 HOH A 152 401 177 HOH HOH . E 5 HOH A 153 402 178 HOH HOH . E 5 HOH A 154 403 179 HOH HOH . E 5 HOH A 155 404 180 HOH HOH . E 5 HOH A 156 405 181 HOH HOH . E 5 HOH A 157 406 182 HOH HOH . E 5 HOH A 158 407 183 HOH HOH . E 5 HOH A 159 408 184 HOH HOH . E 5 HOH A 160 409 185 HOH HOH . E 5 HOH A 161 410 186 HOH HOH . E 5 HOH A 162 411 187 HOH HOH . E 5 HOH A 163 412 188 HOH HOH . E 5 HOH A 164 413 189 HOH HOH . E 5 HOH A 165 414 190 HOH HOH . E 5 HOH A 166 415 191 HOH HOH . E 5 HOH A 167 416 192 HOH HOH . E 5 HOH A 168 417 193 HOH HOH . E 5 HOH A 169 418 194 HOH HOH . E 5 HOH A 170 419 195 HOH HOH . E 5 HOH A 171 420 196 HOH HOH . E 5 HOH A 172 421 197 HOH HOH . E 5 HOH A 173 422 198 HOH HOH . E 5 HOH A 174 423 199 HOH HOH . E 5 HOH A 175 424 200 HOH HOH . E 5 HOH A 176 425 201 HOH HOH . E 5 HOH A 177 426 202 HOH HOH . E 5 HOH A 178 427 204 HOH HOH . E 5 HOH A 179 428 206 HOH HOH . E 5 HOH A 180 429 207 HOH HOH . E 5 HOH A 181 430 208 HOH HOH . E 5 HOH A 182 431 209 HOH HOH . E 5 HOH A 183 432 210 HOH HOH . E 5 HOH A 184 433 211 HOH HOH . E 5 HOH A 185 434 212 HOH HOH . E 5 HOH A 186 435 213 HOH HOH . E 5 HOH A 187 436 214 HOH HOH . E 5 HOH A 188 437 215 HOH HOH . E 5 HOH A 189 438 217 HOH HOH . E 5 HOH A 190 439 218 HOH HOH . E 5 HOH A 191 440 219 HOH HOH . E 5 HOH A 192 441 220 HOH HOH . E 5 HOH A 193 442 221 HOH HOH . E 5 HOH A 194 443 222 HOH HOH . E 5 HOH A 195 444 223 HOH HOH . E 5 HOH A 196 445 224 HOH HOH . E 5 HOH A 197 446 225 HOH HOH . E 5 HOH A 198 447 226 HOH HOH . E 5 HOH A 199 448 227 HOH HOH . E 5 HOH A 200 449 228 HOH HOH . E 5 HOH A 201 450 229 HOH HOH . E 5 HOH A 202 451 230 HOH HOH . E 5 HOH A 203 452 231 HOH HOH . E 5 HOH A 204 453 233 HOH HOH . E 5 HOH A 205 454 234 HOH HOH . E 5 HOH A 206 455 236 HOH HOH . E 5 HOH A 207 456 237 HOH HOH . E 5 HOH A 208 457 238 HOH HOH . E 5 HOH A 209 458 239 HOH HOH . E 5 HOH A 210 459 240 HOH HOH . E 5 HOH A 211 460 241 HOH HOH . E 5 HOH A 212 461 242 HOH HOH . E 5 HOH A 213 462 244 HOH HOH . E 5 HOH A 214 463 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -41.455 -12.642 4.79 1 53.32 ? C1 NAG 247 A 1 HETATM 2 C C2 NAG . . . B 2 -42.069 -12.613 6.208 1 65.11 ? C2 NAG 247 A 1 HETATM 3 C C3 NAG . . . B 2 -42.671 -11.246 6.597 1 67.23 ? C3 NAG 247 A 1 HETATM 4 C C4 NAG . . . B 2 -41.644 -10.153 6.336 1 66.6 ? C4 NAG 247 A 1 HETATM 5 C C5 NAG . . . B 2 -41.215 -10.216 4.865 1 63.53 ? C5 NAG 247 A 1 HETATM 6 C C6 NAG . . . B 2 -40.18 -9.128 4.588 1 64.05 ? C6 NAG 247 A 1 HETATM 7 C C7 NAG . . . B 2 -42.723 -14.854 6.881 1 70.28 ? C7 NAG 247 A 1 HETATM 8 C C8 NAG . . . B 2 -43.794 -15.909 6.906 1 70.36 ? C8 NAG 247 A 1 HETATM 9 N N2 NAG . . . B 2 -43.038 -13.694 6.298 1 67.07 ? N2 NAG 247 A 1 HETATM 10 O O3 NAG . . . B 2 -43.086 -11.17 7.954 1 72.53 ? O3 NAG 247 A 1 HETATM 11 O O4 NAG . . . B 2 -42.171 -8.886 6.693 1 69.11 ? O4 NAG 247 A 1 HETATM 12 O O5 NAG . . . B 2 -40.66 -11.49 4.528 1 58.33 ? O5 NAG 247 A 1 HETATM 13 O O6 NAG . . . B 2 -39.637 -9.289 3.297 1 66.19 ? O6 NAG 247 A 1 HETATM 14 O O7 NAG . . . B 2 -41.614 -15.076 7.379 1 70.43 ? O7 NAG 247 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #