data_3U70 # _model_server_result.job_id czsL11TC2HAkh962WG6mNg _model_server_result.datetime_utc '2024-11-13 16:21:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":247}' # _entry.id 3U70 # _exptl.entry_id 3U70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U70 _cell.length_a 129.989 _cell.length_b 129.989 _cell.length_c 39.916 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.464 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 253 n n C1 O1 NAG sing 254 n n C1 O5 NAG sing 255 n n C1 H1 NAG sing 256 n n C2 C3 NAG sing 257 n n C2 N2 NAG sing 258 n n C2 H2 NAG sing 259 n n C3 C4 NAG sing 260 n n C3 O3 NAG sing 261 n n C3 H3 NAG sing 262 n n C4 C5 NAG sing 263 n n C4 O4 NAG sing 264 n n C4 H4 NAG sing 265 n n C5 C6 NAG sing 266 n n C5 O5 NAG sing 267 n n C5 H5 NAG sing 268 n n C6 O6 NAG sing 269 n n C6 H61 NAG sing 270 n n C6 H62 NAG sing 271 n n C7 C8 NAG sing 272 n n C7 N2 NAG sing 273 n n C7 O7 NAG doub 274 n n C8 H81 NAG sing 275 n n C8 H82 NAG sing 276 n n C8 H83 NAG sing 277 n n N2 HN2 NAG sing 278 n n O1 HO1 NAG sing 279 n n O3 HO3 NAG sing 280 n n O4 HO4 NAG sing 281 n n O6 HO6 NAG sing 282 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3U70 _atom_sites.fract_transf_matrix[1][1] 0.007693 _atom_sites.fract_transf_matrix[1][2] 0.004442 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 247 247 NAG NAG . C 3 GOL A 1 249 249 GOL GOL . D 4 ADE A 1 248 248 ADE ADE . E 5 HOH A 1 250 250 HOH HOH . E 5 HOH A 2 251 251 HOH HOH . E 5 HOH A 3 252 252 HOH HOH . E 5 HOH A 4 253 253 HOH HOH . E 5 HOH A 5 254 254 HOH HOH . E 5 HOH A 6 255 255 HOH HOH . E 5 HOH A 7 256 256 HOH HOH . E 5 HOH A 8 257 257 HOH HOH . E 5 HOH A 9 258 258 HOH HOH . E 5 HOH A 10 259 259 HOH HOH . E 5 HOH A 11 260 260 HOH HOH . E 5 HOH A 12 261 261 HOH HOH . E 5 HOH A 13 262 262 HOH HOH . E 5 HOH A 14 263 263 HOH HOH . E 5 HOH A 15 264 264 HOH HOH . E 5 HOH A 16 265 265 HOH HOH . E 5 HOH A 17 266 266 HOH HOH . E 5 HOH A 18 267 267 HOH HOH . E 5 HOH A 19 268 268 HOH HOH . E 5 HOH A 20 269 269 HOH HOH . E 5 HOH A 21 270 270 HOH HOH . E 5 HOH A 22 271 271 HOH HOH . E 5 HOH A 23 272 272 HOH HOH . E 5 HOH A 24 273 273 HOH HOH . E 5 HOH A 25 274 274 HOH HOH . E 5 HOH A 26 275 275 HOH HOH . E 5 HOH A 27 276 276 HOH HOH . E 5 HOH A 28 277 277 HOH HOH . E 5 HOH A 29 278 278 HOH HOH . E 5 HOH A 30 279 279 HOH HOH . E 5 HOH A 31 280 280 HOH HOH . E 5 HOH A 32 281 281 HOH HOH . E 5 HOH A 33 282 282 HOH HOH . E 5 HOH A 34 283 249 HOH HOH . E 5 HOH A 35 284 284 HOH HOH . E 5 HOH A 36 285 285 HOH HOH . E 5 HOH A 37 286 286 HOH HOH . E 5 HOH A 38 287 287 HOH HOH . E 5 HOH A 39 288 288 HOH HOH . E 5 HOH A 40 289 289 HOH HOH . E 5 HOH A 41 290 290 HOH HOH . E 5 HOH A 42 291 291 HOH HOH . E 5 HOH A 43 292 292 HOH HOH . E 5 HOH A 44 293 293 HOH HOH . E 5 HOH A 45 294 294 HOH HOH . E 5 HOH A 46 295 295 HOH HOH . E 5 HOH A 47 296 296 HOH HOH . E 5 HOH A 48 297 297 HOH HOH . E 5 HOH A 49 298 298 HOH HOH . E 5 HOH A 50 299 299 HOH HOH . E 5 HOH A 51 300 300 HOH HOH . E 5 HOH A 52 301 301 HOH HOH . E 5 HOH A 53 302 302 HOH HOH . E 5 HOH A 54 303 303 HOH HOH . E 5 HOH A 55 304 304 HOH HOH . E 5 HOH A 56 305 305 HOH HOH . E 5 HOH A 57 306 306 HOH HOH . E 5 HOH A 58 307 307 HOH HOH . E 5 HOH A 59 308 308 HOH HOH . E 5 HOH A 60 309 309 HOH HOH . E 5 HOH A 61 310 310 HOH HOH . E 5 HOH A 62 311 311 HOH HOH . E 5 HOH A 63 312 312 HOH HOH . E 5 HOH A 64 313 313 HOH HOH . E 5 HOH A 65 314 314 HOH HOH . E 5 HOH A 66 315 315 HOH HOH . E 5 HOH A 67 316 316 HOH HOH . E 5 HOH A 68 317 317 HOH HOH . E 5 HOH A 69 318 318 HOH HOH . E 5 HOH A 70 319 319 HOH HOH . E 5 HOH A 71 320 320 HOH HOH . E 5 HOH A 72 321 321 HOH HOH . E 5 HOH A 73 322 322 HOH HOH . E 5 HOH A 74 323 323 HOH HOH . E 5 HOH A 75 324 324 HOH HOH . E 5 HOH A 76 325 325 HOH HOH . E 5 HOH A 77 326 326 HOH HOH . E 5 HOH A 78 327 327 HOH HOH . E 5 HOH A 79 328 328 HOH HOH . E 5 HOH A 80 329 329 HOH HOH . E 5 HOH A 81 330 330 HOH HOH . E 5 HOH A 82 331 331 HOH HOH . E 5 HOH A 83 332 332 HOH HOH . E 5 HOH A 84 333 333 HOH HOH . E 5 HOH A 85 334 334 HOH HOH . E 5 HOH A 86 335 2 HOH HOH . E 5 HOH A 87 336 336 HOH HOH . E 5 HOH A 88 337 337 HOH HOH . E 5 HOH A 89 338 338 HOH HOH . E 5 HOH A 90 339 339 HOH HOH . E 5 HOH A 91 340 340 HOH HOH . E 5 HOH A 92 341 341 HOH HOH . E 5 HOH A 93 342 342 HOH HOH . E 5 HOH A 94 343 343 HOH HOH . E 5 HOH A 95 344 3 HOH HOH . E 5 HOH A 96 345 345 HOH HOH . E 5 HOH A 97 346 346 HOH HOH . E 5 HOH A 98 347 4 HOH HOH . E 5 HOH A 99 348 348 HOH HOH . E 5 HOH A 100 349 349 HOH HOH . E 5 HOH A 101 350 350 HOH HOH . E 5 HOH A 102 351 351 HOH HOH . E 5 HOH A 103 352 352 HOH HOH . E 5 HOH A 104 353 5 HOH HOH . E 5 HOH A 105 354 354 HOH HOH . E 5 HOH A 106 355 355 HOH HOH . E 5 HOH A 107 356 6 HOH HOH . E 5 HOH A 108 357 357 HOH HOH . E 5 HOH A 109 358 358 HOH HOH . E 5 HOH A 110 359 359 HOH HOH . E 5 HOH A 111 360 360 HOH HOH . E 5 HOH A 112 361 361 HOH HOH . E 5 HOH A 113 362 7 HOH HOH . E 5 HOH A 114 363 8 HOH HOH . E 5 HOH A 115 364 9 HOH HOH . E 5 HOH A 116 365 365 HOH HOH . E 5 HOH A 117 366 10 HOH HOH . E 5 HOH A 118 367 367 HOH HOH . E 5 HOH A 119 368 368 HOH HOH . E 5 HOH A 120 369 369 HOH HOH . E 5 HOH A 121 370 370 HOH HOH . E 5 HOH A 122 371 371 HOH HOH . E 5 HOH A 123 372 372 HOH HOH . E 5 HOH A 124 373 373 HOH HOH . E 5 HOH A 125 374 374 HOH HOH . E 5 HOH A 126 375 375 HOH HOH . E 5 HOH A 127 376 376 HOH HOH . E 5 HOH A 128 377 11 HOH HOH . E 5 HOH A 129 378 13 HOH HOH . E 5 HOH A 130 379 15 HOH HOH . E 5 HOH A 131 380 16 HOH HOH . E 5 HOH A 132 381 17 HOH HOH . E 5 HOH A 133 382 19 HOH HOH . E 5 HOH A 134 383 20 HOH HOH . E 5 HOH A 135 384 21 HOH HOH . E 5 HOH A 136 385 22 HOH HOH . E 5 HOH A 137 386 23 HOH HOH . E 5 HOH A 138 387 24 HOH HOH . E 5 HOH A 139 388 26 HOH HOH . E 5 HOH A 140 389 27 HOH HOH . E 5 HOH A 141 390 28 HOH HOH . E 5 HOH A 142 391 29 HOH HOH . E 5 HOH A 143 392 30 HOH HOH . E 5 HOH A 144 393 31 HOH HOH . E 5 HOH A 145 394 32 HOH HOH . E 5 HOH A 146 395 33 HOH HOH . E 5 HOH A 147 396 35 HOH HOH . E 5 HOH A 148 397 36 HOH HOH . E 5 HOH A 149 398 37 HOH HOH . E 5 HOH A 150 399 38 HOH HOH . E 5 HOH A 151 400 41 HOH HOH . E 5 HOH A 152 401 42 HOH HOH . E 5 HOH A 153 402 43 HOH HOH . E 5 HOH A 154 403 44 HOH HOH . E 5 HOH A 155 404 45 HOH HOH . E 5 HOH A 156 405 47 HOH HOH . E 5 HOH A 157 406 48 HOH HOH . E 5 HOH A 158 407 49 HOH HOH . E 5 HOH A 159 408 50 HOH HOH . E 5 HOH A 160 409 52 HOH HOH . E 5 HOH A 161 410 53 HOH HOH . E 5 HOH A 162 411 54 HOH HOH . E 5 HOH A 163 412 55 HOH HOH . E 5 HOH A 164 413 56 HOH HOH . E 5 HOH A 165 414 57 HOH HOH . E 5 HOH A 166 415 58 HOH HOH . E 5 HOH A 167 416 59 HOH HOH . E 5 HOH A 168 417 60 HOH HOH . E 5 HOH A 169 418 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 9.805 -42.129 -31.523 1 58.57 ? C1 NAG 247 A 1 HETATM 2 C C2 NAG . . . B 2 10.288 -42.821 -32.832 1 68.75 ? C2 NAG 247 A 1 HETATM 3 C C3 NAG . . . B 2 11.761 -42.589 -33.235 1 72.83 ? C3 NAG 247 A 1 HETATM 4 C C4 NAG . . . B 2 12.079 -41.109 -33.06 1 69.1 ? C4 NAG 247 A 1 HETATM 5 C C5 NAG . . . B 2 11.807 -40.724 -31.593 1 66.03 ? C5 NAG 247 A 1 HETATM 6 C C6 NAG . . . B 2 12.114 -39.25 -31.344 1 65.07 ? C6 NAG 247 A 1 HETATM 7 C C7 NAG . . . B 2 8.851 -44.755 -33.136 1 78.24 ? C7 NAG 247 A 1 HETATM 8 C C8 NAG . . . B 2 8.601 -46.215 -32.882 1 77.33 ? C8 NAG 247 A 1 HETATM 9 N N2 NAG . . . B 2 9.986 -44.235 -32.653 1 76.23 ? N2 NAG 247 A 1 HETATM 10 O O3 NAG . . . B 2 12.079 -43.001 -34.566 1 71.53 ? O3 NAG 247 A 1 HETATM 11 O O4 NAG . . . B 2 13.413 -40.829 -33.465 1 74.72 ? O4 NAG 247 A 1 HETATM 12 O O5 NAG . . . B 2 10.448 -40.914 -31.192 1 58.41 ? O5 NAG 247 A 1 HETATM 13 O O6 NAG . . . B 2 11.955 -39.014 -29.96 1 67.3 ? O6 NAG 247 A 1 HETATM 14 O O7 NAG . . . B 2 8.034 -44.08 -33.773 1 80.45 ? O7 NAG 247 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #