data_3U74 # _model_server_result.job_id HsGzJUrNzzC6WWWGXhkzWA _model_server_result.datetime_utc '2024-11-30 06:18:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":503}' # _entry.id 3U74 # _exptl.entry_id 3U74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U74 _cell.length_a 111.235 _cell.length_b 111.235 _cell.length_c 78.571 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG U 501 NAG 2 n B NAG 2 A 2 NAG U 502 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 U CYS 3 1_555 A SG CYS 24 U CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? disulf ? disulf2 A SG CYS 6 U CYS 6 1_555 A SG CYS 12 U CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? disulf ? disulf3 A SG CYS 17 U CYS 17 1_555 A SG CYS 45 U CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 A SG CYS 47 U CYS 47 1_555 A SG CYS 259 U CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? disulf ? disulf5 A SG CYS 71 U CYS 71 1_555 A SG CYS 76 U CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 95 U CYS 95 1_555 A SG CYS 122 U CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 A SG CYS 98 U CYS 98 1_555 A SG CYS 105 U CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf8 A SG CYS 115 U CYS 115 1_555 A SG CYS 147 U CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 153 U CYS 153 1_555 A SG CYS 170 U CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf10 A SG CYS 171 U CYS 171 1_555 A SG CYS 176 U CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? disulf ? disulf11 A SG CYS 194 U CYS 194 1_555 A SG CYS 222 U CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 A SG CYS 197 U CYS 197 1_555 A SG CYS 205 U CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf13 A SG CYS 215 U CYS 215 1_555 A SG CYS 241 U CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf14 A SG CYS 247 U CYS 247 1_555 A SG CYS 265 U CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf15 A SG CYS 266 U CYS 266 1_555 A SG CYS 271 U CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? covale ? covale1 A ND2 ASN 52 U ASN 52 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale2 A ND2 ASN 200 U ASN 200 1_555 C C1 NAG . U NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale3 B O4 NAG . A NAG 1 1_555 B C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3U74 _atom_sites.fract_transf_matrix[1][1] 0.00899 _atom_sites.fract_transf_matrix[1][2] 0.00519 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG U 1 503 503 NAG NAG . D 4 HOH U 1 601 1 HOH HOH . D 4 HOH U 2 602 2 HOH HOH . D 4 HOH U 3 603 3 HOH HOH . D 4 HOH U 4 604 4 HOH HOH . D 4 HOH U 5 605 5 HOH HOH . D 4 HOH U 6 606 6 HOH HOH . D 4 HOH U 7 607 7 HOH HOH . D 4 HOH U 8 608 8 HOH HOH . D 4 HOH U 9 609 9 HOH HOH . D 4 HOH U 10 610 10 HOH HOH . D 4 HOH U 11 611 11 HOH HOH . D 4 HOH U 12 612 12 HOH HOH . D 4 HOH U 13 613 13 HOH HOH . D 4 HOH U 14 614 14 HOH HOH . D 4 HOH U 15 615 15 HOH HOH . D 4 HOH U 16 616 16 HOH HOH . D 4 HOH U 17 617 17 HOH HOH . D 4 HOH U 18 618 18 HOH HOH . D 4 HOH U 19 619 19 HOH HOH . D 4 HOH U 20 620 20 HOH HOH . D 4 HOH U 21 621 21 HOH HOH . D 4 HOH U 22 622 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 2.773 15.831 -17.958 1 101.86 ? C1 NAG 503 U 1 HETATM 2 C C2 NAG . . . C 3 2.173 15.981 -19.307 1 113.72 ? C2 NAG 503 U 1 HETATM 3 C C3 NAG . . . C 3 3.202 15.462 -20.263 1 111.4 ? C3 NAG 503 U 1 HETATM 4 C C4 NAG . . . C 3 4.33 16.46 -20.316 1 111.16 ? C4 NAG 503 U 1 HETATM 5 C C5 NAG . . . C 3 4.668 17.029 -18.959 1 114.2 ? C5 NAG 503 U 1 HETATM 6 C C6 NAG . . . C 3 4.535 18.516 -19.08 1 118.16 ? C6 NAG 503 U 1 HETATM 7 C C7 NAG . . . C 3 -0.303 16.094 -19.641 1 111.79 ? C7 NAG 503 U 1 HETATM 8 C C8 NAG . . . C 3 -1.642 15.421 -19.695 1 116.92 ? C8 NAG 503 U 1 HETATM 9 N N2 NAG . . . C 3 0.893 15.324 -19.373 1 109.96 ? N2 NAG 503 U 1 HETATM 10 O O3 NAG . . . C 3 2.645 15.324 -21.507 1 112.77 ? O3 NAG 503 U 1 HETATM 11 O O4 NAG . . . C 3 5.473 15.941 -20.903 1 109.64 ? O4 NAG 503 U 1 HETATM 12 O O5 NAG . . . C 3 3.936 16.554 -17.867 1 108.77 ? O5 NAG 503 U 1 HETATM 13 O O6 NAG . . . C 3 4.28 19.096 -17.853 1 131.09 ? O6 NAG 503 U 1 HETATM 14 O O7 NAG . . . C 3 -0.239 17.303 -19.826 1 99.26 ? O7 NAG 503 U 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #