data_3U78 # _model_server_result.job_id 51RiBBJf1khh5X9eIDyF-w _model_server_result.datetime_utc '2024-12-02 10:07:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":707}' # _entry.id 3U78 # _exptl.entry_id 3U78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 549.751 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[(5-aminopentyl)oxy]-N~4~-(1-benzylpiperidin-4-yl)-N~2~-[3-(dimethylamino)propyl]-6-methoxyquinazoline-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U78 _cell.length_a 77.429 _cell.length_b 77.429 _cell.length_c 289.685 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 191 A HIS 282 1_555 C NI NI . A NI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A OD1 ASP 193 A ASP 284 1_555 C NI NI . A NI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc3 A NE2 HIS 263 A HIS 354 1_555 C NI NI . A NI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 B O5 AKG . A AKG 701 1_555 C NI NI . A NI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc5 B O1 AKG . A AKG 701 1_555 C NI NI . A NI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 C NI NI . A NI 702 1_555 I O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? # _chem_comp.formula 'C31 H47 N7 O2' _chem_comp.formula_weight 549.751 _chem_comp.id E67 _chem_comp.mon_nstd_flag . _chem_comp.name 7-[(5-aminopentyl)oxy]-N~4~-(1-benzylpiperidin-4-yl)-N~2~-[3-(dimethylamino)propyl]-6-methoxyquinazoline-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N1 E67 doub 98 n y N1 C2 E67 sing 99 n y N3 C2 E67 doub 100 n y C2 NAU E67 sing 101 n n C4 N3 E67 sing 102 n y C5 C4 E67 sing 103 n y CAF C4 E67 doub 104 n y CAC C5 E67 doub 105 n y C5 C6 E67 sing 106 n y NAN C6 E67 sing 107 n n CAB CAA E67 doub 108 n y OAK CAA E67 sing 109 n n CAA CAF E67 sing 110 n y OAL CAB E67 sing 111 n n CAB CAC E67 sing 112 n y CAC HAC E67 sing 113 n n CAF HAF E67 sing 114 n n OAK CBB E67 sing 115 n n CAM OAL E67 sing 116 n n CAM HAM E67 sing 117 n n CAM HAMA E67 sing 118 n n CAM HAMB E67 sing 119 n n NAN CAO E67 sing 120 n n NAN HNAN E67 sing 121 n n CAT CAO E67 sing 122 n n CAP CAO E67 sing 123 n n CAO HAO E67 sing 124 n n CAP CAQ E67 sing 125 n n CAP HAP E67 sing 126 n n CAP HAPA E67 sing 127 n n NAR CAQ E67 sing 128 n n CAQ HAQ E67 sing 129 n n CAQ HAQA E67 sing 130 n n NAR CBH E67 sing 131 n n NAR CAS E67 sing 132 n n CAT CAS E67 sing 133 n n CAS HAS E67 sing 134 n n CAS HASA E67 sing 135 n n CAT HAT E67 sing 136 n n CAT HATA E67 sing 137 n n NAU CAV E67 sing 138 n n NAU HNAU E67 sing 139 n n CAV CAW E67 sing 140 n n CAV HAV E67 sing 141 n n CAV HAVA E67 sing 142 n n CAW CAX E67 sing 143 n n CAW HAW E67 sing 144 n n CAW HAWA E67 sing 145 n n CAX NAY E67 sing 146 n n CAX HAX E67 sing 147 n n CAX HAXA E67 sing 148 n n NAY CBA E67 sing 149 n n NAY CAZ E67 sing 150 n n CAZ HAZ E67 sing 151 n n CAZ HAZA E67 sing 152 n n CAZ HAZB E67 sing 153 n n CBA HBA E67 sing 154 n n CBA HBAA E67 sing 155 n n CBA HBAB E67 sing 156 n n CBC CBB E67 sing 157 n n CBB HBB E67 sing 158 n n CBB HBBA E67 sing 159 n n CBD CBC E67 sing 160 n n CBC HBC E67 sing 161 n n CBC HBCA E67 sing 162 n n CBE CBD E67 sing 163 n n CBD HBD E67 sing 164 n n CBD HBDA E67 sing 165 n n CBF CBE E67 sing 166 n n CBE HBE E67 sing 167 n n CBE HBEA E67 sing 168 n n NBG CBF E67 sing 169 n n CBF HBF E67 sing 170 n n CBF HBFA E67 sing 171 n n NBG HNBG E67 sing 172 n n NBG HNBA E67 sing 173 n n CBI CBH E67 sing 174 n n CBH HBH E67 sing 175 n n CBH HBHA E67 sing 176 n n CBN CBI E67 doub 177 n y CBI CBJ E67 sing 178 n y CBK CBJ E67 doub 179 n y CBJ HBJ E67 sing 180 n n CBL CBK E67 sing 181 n y CBK HBK E67 sing 182 n n CBM CBL E67 doub 183 n y CBL HBL E67 sing 184 n n CBM CBN E67 sing 185 n y CBM HBM E67 sing 186 n n CBN HBN E67 sing 187 n n # _atom_sites.entry_id 3U78 _atom_sites.fract_transf_matrix[1][1] 0.012915 _atom_sites.fract_transf_matrix[1][2] 0.007457 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 701 701 AKG AKG . C 3 NI A 1 702 702 NI NI . D 4 CL A 1 703 703 CL CL . E 5 SO4 A 1 704 704 SO4 SO4 . F 6 EDO A 1 705 705 EDO EDO . G 6 EDO A 1 706 706 EDO EDO . H 7 E67 A 1 707 707 E67 E67 . I 8 HOH A 1 801 801 HOH HOH . I 8 HOH A 2 802 802 HOH HOH . I 8 HOH A 3 804 804 HOH HOH . I 8 HOH A 4 809 809 HOH HOH . I 8 HOH A 5 810 810 HOH HOH . I 8 HOH A 6 811 811 HOH HOH . I 8 HOH A 7 818 818 HOH HOH . I 8 HOH A 8 821 821 HOH HOH . I 8 HOH A 9 823 823 HOH HOH . I 8 HOH A 10 824 824 HOH HOH . I 8 HOH A 11 826 826 HOH HOH . I 8 HOH A 12 829 829 HOH HOH . I 8 HOH A 13 831 831 HOH HOH . I 8 HOH A 14 832 832 HOH HOH . I 8 HOH A 15 833 833 HOH HOH . I 8 HOH A 16 834 834 HOH HOH . I 8 HOH A 17 835 835 HOH HOH . I 8 HOH A 18 836 836 HOH HOH . I 8 HOH A 19 837 837 HOH HOH . I 8 HOH A 20 838 838 HOH HOH . I 8 HOH A 21 840 840 HOH HOH . I 8 HOH A 22 842 842 HOH HOH . I 8 HOH A 23 843 843 HOH HOH . I 8 HOH A 24 844 844 HOH HOH . I 8 HOH A 25 846 846 HOH HOH . I 8 HOH A 26 848 848 HOH HOH . I 8 HOH A 27 855 855 HOH HOH . I 8 HOH A 28 856 856 HOH HOH . I 8 HOH A 29 857 857 HOH HOH . I 8 HOH A 30 859 859 HOH HOH . I 8 HOH A 31 861 861 HOH HOH . I 8 HOH A 32 863 863 HOH HOH . I 8 HOH A 33 864 864 HOH HOH . I 8 HOH A 34 865 865 HOH HOH . I 8 HOH A 35 866 866 HOH HOH . I 8 HOH A 36 867 867 HOH HOH . I 8 HOH A 37 868 868 HOH HOH . I 8 HOH A 38 869 869 HOH HOH . I 8 HOH A 39 870 870 HOH HOH . I 8 HOH A 40 871 871 HOH HOH . I 8 HOH A 41 872 872 HOH HOH . I 8 HOH A 42 873 873 HOH HOH . I 8 HOH A 43 874 874 HOH HOH . I 8 HOH A 44 876 876 HOH HOH . I 8 HOH A 45 877 877 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 E67 . . . H 7 -45.805 23.965 21.406 1 89 ? N1 E67 707 A 1 HETATM 2 C C2 E67 . . . H 7 -44.79 24.799 21.035 1 87.35 ? C2 E67 707 A 1 HETATM 3 N N3 E67 . . . H 7 -44.142 24.613 19.899 1 84.39 ? N3 E67 707 A 1 HETATM 4 C C4 E67 . . . H 7 -44.489 23.608 19.076 1 79.27 ? C4 E67 707 A 1 HETATM 5 C C5 E67 . . . H 7 -45.54 22.74 19.419 1 83.6 ? C5 E67 707 A 1 HETATM 6 C C6 E67 . . . H 7 -46.209 22.95 20.639 1 90.15 ? C6 E67 707 A 1 HETATM 7 C CAA E67 . . . H 7 -44.173 22.39 17.038 1 78.13 ? CAA E67 707 A 1 HETATM 8 C CAB E67 . . . H 7 -45.22 21.515 17.351 1 79.68 ? CAB E67 707 A 1 HETATM 9 C CAC E67 . . . H 7 -45.907 21.679 18.547 1 73.2 ? CAC E67 707 A 1 HETATM 10 C CAF E67 . . . H 7 -43.811 23.442 17.906 1 78.26 ? CAF E67 707 A 1 HETATM 11 O OAK E67 . . . H 7 -43.467 22.316 15.852 1 71.84 ? OAK E67 707 A 1 HETATM 12 O OAL E67 . . . H 7 -45.573 20.492 16.467 1 65.24 ? OAL E67 707 A 1 HETATM 13 C CAM E67 . . . H 7 -46.841 20.461 15.932 1 46.7 ? CAM E67 707 A 1 HETATM 14 N NAN E67 . . . H 7 -47.292 22.099 21.08 1 90.15 ? NAN E67 707 A 1 HETATM 15 N NAU E67 . . . H 7 -44.344 25.84 21.964 1 82.22 ? NAU E67 707 A 1 HETATM 16 C CAV E67 . . . H 7 -43.842 26.321 23.26 1 77.67 ? CAV E67 707 A 1 HETATM 17 C CAW E67 . . . H 7 -43.607 25.215 24.305 1 77.27 ? CAW E67 707 A 1 HETATM 18 C CAX E67 . . . H 7 -42.862 23.978 23.921 1 78.9 ? CAX E67 707 A 1 HETATM 19 N NAY E67 . . . H 7 -43.444 23.017 22.999 1 80 ? NAY E67 707 A 1 HETATM 20 C CAZ E67 . . . H 7 -43.794 21.769 23.712 1 77.81 ? CAZ E67 707 A 1 HETATM 21 C CBA E67 . . . H 7 -42.532 22.698 21.949 1 76.63 ? CBA E67 707 A 1 HETATM 22 C CBB E67 . . . H 7 -43.429 23.497 15.088 1 63.49 ? CBB E67 707 A 1 HETATM 23 C CBC E67 . . . H 7 -42.056 24.154 14.746 1 57.28 ? CBC E67 707 A 1 HETATM 24 C CBD E67 . . . H 7 -41.055 23.385 13.886 1 56.98 ? CBD E67 707 A 1 HETATM 25 C CBE E67 . . . H 7 -39.897 24.227 13.366 1 59.86 ? CBE E67 707 A 1 HETATM 26 C CBF E67 . . . H 7 -40.088 25.741 13.453 1 51.24 ? CBF E67 707 A 1 HETATM 27 N NBG E67 . . . H 7 -38.999 26.623 13.024 1 43.92 ? NBG E67 707 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #