data_3U7G # _model_server_result.job_id tGmL4FKbcPS9OehUaXgW9g _model_server_result.datetime_utc '2025-04-10 05:00:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u7g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3U7G # _exptl.entry_id 3U7G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.12 _cell.angle_gamma 90 _cell.entry_id 3U7G _cell.length_a 77.16 _cell.length_b 43.03 _cell.length_c 127.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U7G _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 75 A GLN 218 1_555 A N MSE 76 A MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 76 A MSE 219 1_555 A N GLY 77 A GLY 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLY 120 A GLY 263 1_555 A N MSE 121 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 121 A MSE 264 1_555 A N TRP 122 A TRP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C GLU 321 A GLU 464 1_555 A N MSE 322 A MSE 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 322 A MSE 465 1_555 A N THR 323 A THR 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C ASP 332 A ASP 475 1_555 A N MSE 333 A MSE 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 333 A MSE 476 1_555 A N VAL 334 A VAL 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C VAL 334 A VAL 477 1_555 A N MSE 335 A MSE 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 335 A MSE 478 1_555 A N PHE 336 A PHE 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 B O3' DA 5 X DA 402 1_555 H P PO4 . X PO4 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? metalc ? metalc1 I O HOH . A HOH 5 1_555 G MG MG . A MG 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 I O HOH . A HOH 20 1_555 G MG MG . A MG 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc3 A O ASP 29 A ASP 172 1_555 G MG MG . A MG 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 A OD1 ASP 145 A ASP 288 1_555 G MG MG . A MG 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 A OD2 ASP 145 A ASP 288 1_555 G MG MG . A MG 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc6 G MG MG . A MG 529 1_555 H O1 PO4 . X PO4 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 239 n n C1 C2 GOL sing 240 n n C1 H11 GOL sing 241 n n C1 H12 GOL sing 242 n n O1 HO1 GOL sing 243 n n C2 O2 GOL sing 244 n n C2 C3 GOL sing 245 n n C2 H2 GOL sing 246 n n O2 HO2 GOL sing 247 n n C3 O3 GOL sing 248 n n C3 H31 GOL sing 249 n n C3 H32 GOL sing 250 n n O3 HO3 GOL sing 251 n n # _atom_sites.entry_id 3U7G _atom_sites.fract_transf_matrix[1][1] 0.01296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003992 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 1 1 GOL GOL . D 3 GOL A 1 526 1 GOL GOL . E 3 GOL A 1 527 1 GOL GOL . F 4 PO4 A 1 528 1 PO4 PO4 . G 5 MG A 1 529 1 MG MG . H 4 PO4 X 1 523 403 PO4 PO4 . I 6 HOH A 1 2 2 HOH HOH . I 6 HOH A 2 3 3 HOH HOH . I 6 HOH A 3 4 4 HOH HOH . I 6 HOH A 4 5 5 HOH HOH . I 6 HOH A 5 6 6 HOH HOH . I 6 HOH A 6 7 7 HOH HOH . I 6 HOH A 7 8 8 HOH HOH . I 6 HOH A 8 9 9 HOH HOH . I 6 HOH A 9 10 10 HOH HOH . I 6 HOH A 10 11 11 HOH HOH . I 6 HOH A 11 12 12 HOH HOH . I 6 HOH A 12 13 13 HOH HOH . I 6 HOH A 13 14 14 HOH HOH . I 6 HOH A 14 15 15 HOH HOH . I 6 HOH A 15 16 16 HOH HOH . I 6 HOH A 16 17 17 HOH HOH . I 6 HOH A 17 18 18 HOH HOH . I 6 HOH A 18 19 19 HOH HOH . I 6 HOH A 19 20 20 HOH HOH . I 6 HOH A 20 21 21 HOH HOH . I 6 HOH A 21 22 22 HOH HOH . I 6 HOH A 22 24 24 HOH HOH . I 6 HOH A 23 25 25 HOH HOH . I 6 HOH A 24 26 26 HOH HOH . I 6 HOH A 25 27 27 HOH HOH . I 6 HOH A 26 28 28 HOH HOH . I 6 HOH A 27 29 29 HOH HOH . I 6 HOH A 28 30 30 HOH HOH . I 6 HOH A 29 31 31 HOH HOH . I 6 HOH A 30 32 32 HOH HOH . I 6 HOH A 31 33 33 HOH HOH . I 6 HOH A 32 34 34 HOH HOH . I 6 HOH A 33 35 35 HOH HOH . I 6 HOH A 34 36 36 HOH HOH . I 6 HOH A 35 37 37 HOH HOH . I 6 HOH A 36 38 38 HOH HOH . I 6 HOH A 37 39 39 HOH HOH . I 6 HOH A 38 40 40 HOH HOH . I 6 HOH A 39 41 41 HOH HOH . I 6 HOH A 40 42 42 HOH HOH . I 6 HOH A 41 43 43 HOH HOH . I 6 HOH A 42 44 44 HOH HOH . I 6 HOH A 43 45 45 HOH HOH . I 6 HOH A 44 46 46 HOH HOH . I 6 HOH A 45 47 47 HOH HOH . I 6 HOH A 46 48 48 HOH HOH . I 6 HOH A 47 49 49 HOH HOH . I 6 HOH A 48 50 50 HOH HOH . I 6 HOH A 49 51 51 HOH HOH . I 6 HOH A 50 52 52 HOH HOH . I 6 HOH A 51 53 53 HOH HOH . I 6 HOH A 52 54 54 HOH HOH . I 6 HOH A 53 55 55 HOH HOH . I 6 HOH A 54 56 56 HOH HOH . I 6 HOH A 55 57 57 HOH HOH . I 6 HOH A 56 58 58 HOH HOH . I 6 HOH A 57 59 59 HOH HOH . I 6 HOH A 58 60 60 HOH HOH . I 6 HOH A 59 61 61 HOH HOH . I 6 HOH A 60 62 62 HOH HOH . I 6 HOH A 61 63 63 HOH HOH . I 6 HOH A 62 64 64 HOH HOH . I 6 HOH A 63 65 65 HOH HOH . I 6 HOH A 64 67 67 HOH HOH . I 6 HOH A 65 68 68 HOH HOH . I 6 HOH A 66 69 69 HOH HOH . I 6 HOH A 67 70 70 HOH HOH . I 6 HOH A 68 71 71 HOH HOH . I 6 HOH A 69 72 72 HOH HOH . I 6 HOH A 70 73 73 HOH HOH . I 6 HOH A 71 74 74 HOH HOH . I 6 HOH A 72 75 75 HOH HOH . I 6 HOH A 73 76 76 HOH HOH . I 6 HOH A 74 77 77 HOH HOH . I 6 HOH A 75 78 78 HOH HOH . I 6 HOH A 76 79 79 HOH HOH . I 6 HOH A 77 80 80 HOH HOH . I 6 HOH A 78 81 81 HOH HOH . I 6 HOH A 79 82 82 HOH HOH . I 6 HOH A 80 83 83 HOH HOH . I 6 HOH A 81 84 84 HOH HOH . I 6 HOH A 82 85 85 HOH HOH . I 6 HOH A 83 86 86 HOH HOH . I 6 HOH A 84 87 87 HOH HOH . I 6 HOH A 85 88 88 HOH HOH . I 6 HOH A 86 89 89 HOH HOH . I 6 HOH A 87 90 90 HOH HOH . I 6 HOH A 88 91 91 HOH HOH . I 6 HOH A 89 92 92 HOH HOH . I 6 HOH A 90 93 93 HOH HOH . I 6 HOH A 91 94 94 HOH HOH . I 6 HOH A 92 95 95 HOH HOH . I 6 HOH A 93 96 96 HOH HOH . I 6 HOH A 94 97 97 HOH HOH . I 6 HOH A 95 98 98 HOH HOH . I 6 HOH A 96 99 99 HOH HOH . I 6 HOH A 97 100 100 HOH HOH . I 6 HOH A 98 101 101 HOH HOH . I 6 HOH A 99 102 102 HOH HOH . I 6 HOH A 100 103 103 HOH HOH . I 6 HOH A 101 105 105 HOH HOH . I 6 HOH A 102 106 106 HOH HOH . I 6 HOH A 103 107 107 HOH HOH . I 6 HOH A 104 108 108 HOH HOH . I 6 HOH A 105 109 109 HOH HOH . I 6 HOH A 106 110 110 HOH HOH . I 6 HOH A 107 111 111 HOH HOH . I 6 HOH A 108 112 112 HOH HOH . I 6 HOH A 109 113 113 HOH HOH . I 6 HOH A 110 114 114 HOH HOH . I 6 HOH A 111 115 115 HOH HOH . I 6 HOH A 112 116 116 HOH HOH . I 6 HOH A 113 117 117 HOH HOH . I 6 HOH A 114 118 118 HOH HOH . I 6 HOH A 115 119 119 HOH HOH . I 6 HOH A 116 120 120 HOH HOH . I 6 HOH A 117 121 121 HOH HOH . I 6 HOH A 118 122 122 HOH HOH . I 6 HOH A 119 123 123 HOH HOH . I 6 HOH A 120 124 124 HOH HOH . I 6 HOH A 121 125 125 HOH HOH . I 6 HOH A 122 126 126 HOH HOH . I 6 HOH A 123 127 127 HOH HOH . I 6 HOH A 124 128 128 HOH HOH . I 6 HOH A 125 129 129 HOH HOH . I 6 HOH A 126 130 130 HOH HOH . I 6 HOH A 127 132 132 HOH HOH . I 6 HOH A 128 133 133 HOH HOH . I 6 HOH A 129 134 134 HOH HOH . I 6 HOH A 130 135 135 HOH HOH . I 6 HOH A 131 136 136 HOH HOH . I 6 HOH A 132 137 137 HOH HOH . I 6 HOH A 133 138 138 HOH HOH . I 6 HOH A 134 139 139 HOH HOH . I 6 HOH A 135 140 140 HOH HOH . I 6 HOH A 136 141 141 HOH HOH . I 6 HOH A 137 142 142 HOH HOH . I 6 HOH A 138 143 143 HOH HOH . I 6 HOH A 139 530 1 HOH HOH . I 6 HOH A 140 531 144 HOH HOH . I 6 HOH A 141 532 145 HOH HOH . I 6 HOH A 142 533 146 HOH HOH . I 6 HOH A 143 534 147 HOH HOH . I 6 HOH A 144 535 148 HOH HOH . I 6 HOH A 145 536 149 HOH HOH . I 6 HOH A 146 537 150 HOH HOH . I 6 HOH A 147 538 151 HOH HOH . I 6 HOH A 148 539 152 HOH HOH . I 6 HOH A 149 540 153 HOH HOH . I 6 HOH A 150 541 154 HOH HOH . I 6 HOH A 151 542 155 HOH HOH . I 6 HOH A 152 543 157 HOH HOH . I 6 HOH A 153 544 158 HOH HOH . I 6 HOH A 154 545 159 HOH HOH . I 6 HOH A 155 546 160 HOH HOH . I 6 HOH A 156 547 161 HOH HOH . I 6 HOH A 157 548 162 HOH HOH . I 6 HOH A 158 549 163 HOH HOH . I 6 HOH A 159 550 164 HOH HOH . I 6 HOH A 160 551 165 HOH HOH . I 6 HOH A 161 552 166 HOH HOH . I 6 HOH A 162 553 167 HOH HOH . I 6 HOH A 163 554 168 HOH HOH . I 6 HOH A 164 555 169 HOH HOH . I 6 HOH A 165 556 170 HOH HOH . I 6 HOH A 166 557 171 HOH HOH . I 6 HOH A 167 558 172 HOH HOH . I 6 HOH A 168 559 173 HOH HOH . I 6 HOH A 169 560 174 HOH HOH . I 6 HOH A 170 561 175 HOH HOH . I 6 HOH A 171 562 176 HOH HOH . I 6 HOH A 172 563 177 HOH HOH . I 6 HOH A 173 564 178 HOH HOH . I 6 HOH A 174 565 179 HOH HOH . I 6 HOH A 175 566 180 HOH HOH . I 6 HOH A 176 567 181 HOH HOH . I 6 HOH A 177 568 182 HOH HOH . I 6 HOH A 178 569 183 HOH HOH . I 6 HOH A 179 570 184 HOH HOH . I 6 HOH A 180 571 185 HOH HOH . I 6 HOH A 181 572 186 HOH HOH . I 6 HOH A 182 573 187 HOH HOH . I 6 HOH A 183 574 188 HOH HOH . I 6 HOH A 184 575 189 HOH HOH . I 6 HOH A 185 576 190 HOH HOH . I 6 HOH A 186 578 192 HOH HOH . I 6 HOH A 187 579 193 HOH HOH . I 6 HOH A 188 580 194 HOH HOH . I 6 HOH A 189 581 195 HOH HOH . I 6 HOH A 190 582 196 HOH HOH . I 6 HOH A 191 583 197 HOH HOH . I 6 HOH A 192 584 198 HOH HOH . I 6 HOH A 193 585 199 HOH HOH . I 6 HOH A 194 586 200 HOH HOH . I 6 HOH A 195 587 201 HOH HOH . I 6 HOH A 196 588 202 HOH HOH . J 6 HOH X 1 23 23 HOH HOH . J 6 HOH X 2 66 66 HOH HOH . J 6 HOH X 3 104 104 HOH HOH . J 6 HOH X 4 131 131 HOH HOH . J 6 HOH X 5 577 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -14.355 15.689 -32.214 1 24.56 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . C 3 -13.396 14.68 -32.007 1 23.03 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . C 3 -14.763 15.653 -33.675 1 27.05 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . C 3 -15.996 16.306 -33.798 1 30.31 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . C 3 -14.885 14.198 -34.123 1 24.72 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . . . C 3 -13.663 13.694 -34.602 1 21.05 ? O3 GOL 1 A 1 HETATM 7 H H11 GOL . . . C 3 -13.934 16.663 -31.967 1 29.47 ? H11 GOL 1 A 1 HETATM 8 H H12 GOL . . . C 3 -15.224 15.516 -31.579 1 29.47 ? H12 GOL 1 A 1 HETATM 9 H HO1 GOL . . . C 3 -13.068 14.726 -31.085 1 27.64 ? HO1 GOL 1 A 1 HETATM 10 H H2 GOL . . . C 3 -14.003 16.154 -34.275 1 32.46 ? H2 GOL 1 A 1 HETATM 11 H HO2 GOL . . . C 3 -16.291 16.274 -34.731 1 36.37 ? HO2 GOL 1 A 1 HETATM 12 H H31 GOL . . . C 3 -15.637 14.125 -34.909 1 29.66 ? H31 GOL 1 A 1 HETATM 13 H H32 GOL . . . C 3 -15.222 13.59 -33.284 1 29.66 ? H32 GOL 1 A 1 HETATM 14 H HO3 GOL . . . C 3 -13.825 13.149 -35.4 1 25.26 ? HO3 GOL 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #