data_3U7J # _model_server_result.job_id 2VBQpryV-NeASR0NHChHQg _model_server_result.datetime_utc '2024-11-22 18:38:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":242}' # _entry.id 3U7J # _exptl.entry_id 3U7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.05 _cell.angle_gamma 90 _cell.entry_id 3U7J _cell.length_a 80.09 _cell.length_b 73.47 _cell.length_c 52.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 48.033693 0 40.95648 3 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 15.977386 0 81.912961 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 115 A GLU 111 1_555 D K K . A K 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc2 C O2 EDO . A EDO 237 1_555 D K K . A K 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc3 D K K . A K 238 1_555 J O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3U7J _atom_sites.fract_transf_matrix[1][1] 0.012486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009772 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 236 1 SO4 SO4 . C 3 EDO A 1 237 3 EDO EDO . D 4 K A 1 238 4 K K . E 3 EDO A 1 239 5 EDO EDO . F 3 EDO A 1 240 6 EDO EDO . G 2 SO4 A 1 241 1 SO4 SO4 . H 3 EDO A 1 242 1 EDO EDO . I 3 EDO A 1 243 1 EDO EDO . J 5 HOH A 1 244 1 HOH HOH . J 5 HOH A 2 245 2 HOH HOH . J 5 HOH A 3 246 4 HOH HOH . J 5 HOH A 4 247 5 HOH HOH . J 5 HOH A 5 248 6 HOH HOH . J 5 HOH A 6 249 7 HOH HOH . J 5 HOH A 7 250 8 HOH HOH . J 5 HOH A 8 251 9 HOH HOH . J 5 HOH A 9 252 10 HOH HOH . J 5 HOH A 10 253 11 HOH HOH . J 5 HOH A 11 254 12 HOH HOH . J 5 HOH A 12 255 13 HOH HOH . J 5 HOH A 13 256 15 HOH HOH . J 5 HOH A 14 257 16 HOH HOH . J 5 HOH A 15 258 17 HOH HOH . J 5 HOH A 16 259 18 HOH HOH . J 5 HOH A 17 260 19 HOH HOH . J 5 HOH A 18 261 20 HOH HOH . J 5 HOH A 19 262 21 HOH HOH . J 5 HOH A 20 263 22 HOH HOH . J 5 HOH A 21 264 23 HOH HOH . J 5 HOH A 22 265 24 HOH HOH . J 5 HOH A 23 266 25 HOH HOH . J 5 HOH A 24 267 26 HOH HOH . J 5 HOH A 25 268 28 HOH HOH . J 5 HOH A 26 269 29 HOH HOH . J 5 HOH A 27 270 30 HOH HOH . J 5 HOH A 28 271 31 HOH HOH . J 5 HOH A 29 272 32 HOH HOH . J 5 HOH A 30 273 33 HOH HOH . J 5 HOH A 31 274 34 HOH HOH . J 5 HOH A 32 275 35 HOH HOH . J 5 HOH A 33 276 36 HOH HOH . J 5 HOH A 34 277 37 HOH HOH . J 5 HOH A 35 278 38 HOH HOH . J 5 HOH A 36 279 39 HOH HOH . J 5 HOH A 37 280 40 HOH HOH . J 5 HOH A 38 281 41 HOH HOH . J 5 HOH A 39 282 42 HOH HOH . J 5 HOH A 40 283 43 HOH HOH . J 5 HOH A 41 284 44 HOH HOH . J 5 HOH A 42 285 45 HOH HOH . J 5 HOH A 43 286 46 HOH HOH . J 5 HOH A 44 287 47 HOH HOH . J 5 HOH A 45 288 48 HOH HOH . J 5 HOH A 46 289 49 HOH HOH . J 5 HOH A 47 290 50 HOH HOH . J 5 HOH A 48 291 51 HOH HOH . J 5 HOH A 49 292 52 HOH HOH . J 5 HOH A 50 293 53 HOH HOH . J 5 HOH A 51 294 54 HOH HOH . J 5 HOH A 52 295 55 HOH HOH . J 5 HOH A 53 296 56 HOH HOH . J 5 HOH A 54 297 57 HOH HOH . J 5 HOH A 55 298 58 HOH HOH . J 5 HOH A 56 299 59 HOH HOH . J 5 HOH A 57 300 60 HOH HOH . J 5 HOH A 58 301 61 HOH HOH . J 5 HOH A 59 302 62 HOH HOH . J 5 HOH A 60 303 63 HOH HOH . J 5 HOH A 61 304 64 HOH HOH . J 5 HOH A 62 305 65 HOH HOH . J 5 HOH A 63 306 66 HOH HOH . J 5 HOH A 64 307 67 HOH HOH . J 5 HOH A 65 308 68 HOH HOH . J 5 HOH A 66 309 69 HOH HOH . J 5 HOH A 67 310 70 HOH HOH . J 5 HOH A 68 311 71 HOH HOH . J 5 HOH A 69 312 72 HOH HOH . J 5 HOH A 70 313 73 HOH HOH . J 5 HOH A 71 314 74 HOH HOH . J 5 HOH A 72 315 75 HOH HOH . J 5 HOH A 73 316 76 HOH HOH . J 5 HOH A 74 317 77 HOH HOH . J 5 HOH A 75 318 78 HOH HOH . J 5 HOH A 76 319 79 HOH HOH . J 5 HOH A 77 320 80 HOH HOH . J 5 HOH A 78 321 81 HOH HOH . J 5 HOH A 79 322 82 HOH HOH . J 5 HOH A 80 323 83 HOH HOH . J 5 HOH A 81 324 84 HOH HOH . J 5 HOH A 82 325 86 HOH HOH . J 5 HOH A 83 326 87 HOH HOH . J 5 HOH A 84 327 88 HOH HOH . J 5 HOH A 85 328 89 HOH HOH . J 5 HOH A 86 329 90 HOH HOH . J 5 HOH A 87 330 91 HOH HOH . J 5 HOH A 88 331 92 HOH HOH . J 5 HOH A 89 332 93 HOH HOH . J 5 HOH A 90 333 94 HOH HOH . J 5 HOH A 91 334 95 HOH HOH . J 5 HOH A 92 335 96 HOH HOH . J 5 HOH A 93 336 97 HOH HOH . J 5 HOH A 94 337 98 HOH HOH . J 5 HOH A 95 338 99 HOH HOH . J 5 HOH A 96 339 100 HOH HOH . J 5 HOH A 97 340 101 HOH HOH . J 5 HOH A 98 341 102 HOH HOH . J 5 HOH A 99 342 103 HOH HOH . J 5 HOH A 100 343 104 HOH HOH . J 5 HOH A 101 344 105 HOH HOH . J 5 HOH A 102 345 106 HOH HOH . J 5 HOH A 103 346 107 HOH HOH . J 5 HOH A 104 347 108 HOH HOH . J 5 HOH A 105 348 109 HOH HOH . J 5 HOH A 106 349 110 HOH HOH . J 5 HOH A 107 350 111 HOH HOH . J 5 HOH A 108 351 112 HOH HOH . J 5 HOH A 109 352 114 HOH HOH . J 5 HOH A 110 353 115 HOH HOH . J 5 HOH A 111 354 116 HOH HOH . J 5 HOH A 112 355 117 HOH HOH . J 5 HOH A 113 356 118 HOH HOH . J 5 HOH A 114 357 119 HOH HOH . J 5 HOH A 115 358 120 HOH HOH . J 5 HOH A 116 359 121 HOH HOH . J 5 HOH A 117 360 122 HOH HOH . J 5 HOH A 118 361 123 HOH HOH . J 5 HOH A 119 362 124 HOH HOH . J 5 HOH A 120 363 125 HOH HOH . J 5 HOH A 121 364 126 HOH HOH . J 5 HOH A 122 365 127 HOH HOH . J 5 HOH A 123 366 128 HOH HOH . J 5 HOH A 124 367 129 HOH HOH . J 5 HOH A 125 368 130 HOH HOH . J 5 HOH A 126 369 131 HOH HOH . J 5 HOH A 127 370 132 HOH HOH . J 5 HOH A 128 371 133 HOH HOH . J 5 HOH A 129 372 134 HOH HOH . J 5 HOH A 130 373 135 HOH HOH . J 5 HOH A 131 374 136 HOH HOH . J 5 HOH A 132 375 137 HOH HOH . J 5 HOH A 133 376 138 HOH HOH . J 5 HOH A 134 377 139 HOH HOH . J 5 HOH A 135 378 140 HOH HOH . J 5 HOH A 136 379 141 HOH HOH . J 5 HOH A 137 380 142 HOH HOH . J 5 HOH A 138 381 143 HOH HOH . J 5 HOH A 139 382 144 HOH HOH . J 5 HOH A 140 383 146 HOH HOH . J 5 HOH A 141 384 148 HOH HOH . J 5 HOH A 142 385 149 HOH HOH . J 5 HOH A 143 386 150 HOH HOH . J 5 HOH A 144 387 151 HOH HOH . J 5 HOH A 145 388 152 HOH HOH . J 5 HOH A 146 389 153 HOH HOH . J 5 HOH A 147 390 154 HOH HOH . J 5 HOH A 148 391 155 HOH HOH . J 5 HOH A 149 392 156 HOH HOH . J 5 HOH A 150 393 158 HOH HOH . J 5 HOH A 151 394 160 HOH HOH . J 5 HOH A 152 395 162 HOH HOH . J 5 HOH A 153 396 163 HOH HOH . J 5 HOH A 154 397 164 HOH HOH . J 5 HOH A 155 398 165 HOH HOH . J 5 HOH A 156 399 166 HOH HOH . J 5 HOH A 157 400 167 HOH HOH . J 5 HOH A 158 401 168 HOH HOH . J 5 HOH A 159 402 171 HOH HOH . J 5 HOH A 160 403 172 HOH HOH . J 5 HOH A 161 404 173 HOH HOH . J 5 HOH A 162 405 174 HOH HOH . J 5 HOH A 163 406 175 HOH HOH . J 5 HOH A 164 407 176 HOH HOH . J 5 HOH A 165 408 177 HOH HOH . J 5 HOH A 166 409 178 HOH HOH . J 5 HOH A 167 410 179 HOH HOH . J 5 HOH A 168 411 180 HOH HOH . J 5 HOH A 169 412 181 HOH HOH . J 5 HOH A 170 413 182 HOH HOH . J 5 HOH A 171 414 183 HOH HOH . J 5 HOH A 172 415 184 HOH HOH . J 5 HOH A 173 416 185 HOH HOH . J 5 HOH A 174 417 186 HOH HOH . J 5 HOH A 175 418 187 HOH HOH . J 5 HOH A 176 419 188 HOH HOH . J 5 HOH A 177 420 189 HOH HOH . J 5 HOH A 178 421 190 HOH HOH . J 5 HOH A 179 422 191 HOH HOH . J 5 HOH A 180 423 192 HOH HOH . J 5 HOH A 181 424 193 HOH HOH . J 5 HOH A 182 425 194 HOH HOH . J 5 HOH A 183 426 195 HOH HOH . J 5 HOH A 184 427 197 HOH HOH . J 5 HOH A 185 428 198 HOH HOH . J 5 HOH A 186 429 199 HOH HOH . J 5 HOH A 187 430 200 HOH HOH . J 5 HOH A 188 431 201 HOH HOH . J 5 HOH A 189 432 202 HOH HOH . J 5 HOH A 190 433 203 HOH HOH . J 5 HOH A 191 434 204 HOH HOH . J 5 HOH A 192 435 205 HOH HOH . J 5 HOH A 193 436 206 HOH HOH . J 5 HOH A 194 437 207 HOH HOH . J 5 HOH A 195 438 208 HOH HOH . J 5 HOH A 196 439 209 HOH HOH . J 5 HOH A 197 440 210 HOH HOH . J 5 HOH A 198 441 211 HOH HOH . J 5 HOH A 199 442 212 HOH HOH . J 5 HOH A 200 443 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 9.623 54.456 13.693 1 34.11 ? C1 EDO 242 A 1 HETATM 2 O O1 EDO . . . H 3 10.212 55.579 14.342 1 31.07 ? O1 EDO 242 A 1 HETATM 3 C C2 EDO . . . H 3 9.922 54.653 12.222 1 34.93 ? C2 EDO 242 A 1 HETATM 4 O O2 EDO . . . H 3 9.238 55.844 11.818 1 32.67 ? O2 EDO 242 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #