data_3U7W # _model_server_result.job_id V84or5QL4GW-zg2MucnP8Q _model_server_result.datetime_utc '2024-10-19 02:22:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1000}' # _entry.id 3U7W # _exptl.entry_id 3U7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U7W _cell.length_a 49.38 _cell.length_b 87.39 _cell.length_c 166.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 32 H CYS 32 1_555 A SG CYS 102 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 152 H CYS 144 1_555 A SG CYS 208 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 228 H CYS 220 1_555 B SG CYS 210 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 23 L CYS 23 1_555 B SG CYS 86 L CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 B SG CYS 130 L CYS 134 1_555 B SG CYS 190 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C PCA 1 H PCA 1 1_555 A N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B ND2 ASN 70 L ASN 70 1_555 F C1 NAG . L NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3U7W _atom_sites.fract_transf_matrix[1][1] 0.020251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL H 1 222 2 GOL GOL . D 3 GOL H 1 223 3 GOL GOL . E 4 SO4 H 1 224 1 SO4 SO4 . F 5 NAG L 1 1000 1000 NAG NAG . G 3 GOL L 1 215 1 GOL GOL . H 6 HOH H 1 225 1 HOH HOH . H 6 HOH H 2 226 2 HOH HOH . H 6 HOH H 3 227 3 HOH HOH . H 6 HOH H 4 228 5 HOH HOH . H 6 HOH H 5 229 7 HOH HOH . H 6 HOH H 6 230 8 HOH HOH . H 6 HOH H 7 231 9 HOH HOH . H 6 HOH H 8 232 11 HOH HOH . H 6 HOH H 9 233 13 HOH HOH . H 6 HOH H 10 234 15 HOH HOH . H 6 HOH H 11 235 20 HOH HOH . H 6 HOH H 12 236 26 HOH HOH . H 6 HOH H 13 237 27 HOH HOH . H 6 HOH H 14 238 28 HOH HOH . H 6 HOH H 15 239 30 HOH HOH . H 6 HOH H 16 240 32 HOH HOH . H 6 HOH H 17 241 33 HOH HOH . H 6 HOH H 18 242 34 HOH HOH . H 6 HOH H 19 243 36 HOH HOH . H 6 HOH H 20 244 40 HOH HOH . H 6 HOH H 21 245 46 HOH HOH . H 6 HOH H 22 246 47 HOH HOH . H 6 HOH H 23 247 48 HOH HOH . H 6 HOH H 24 248 49 HOH HOH . H 6 HOH H 25 249 54 HOH HOH . H 6 HOH H 26 250 56 HOH HOH . H 6 HOH H 27 251 57 HOH HOH . H 6 HOH H 28 252 58 HOH HOH . H 6 HOH H 29 253 59 HOH HOH . H 6 HOH H 30 254 60 HOH HOH . H 6 HOH H 31 255 61 HOH HOH . H 6 HOH H 32 256 62 HOH HOH . H 6 HOH H 33 257 63 HOH HOH . H 6 HOH H 34 258 67 HOH HOH . H 6 HOH H 35 259 68 HOH HOH . H 6 HOH H 36 260 71 HOH HOH . H 6 HOH H 37 261 74 HOH HOH . H 6 HOH H 38 262 77 HOH HOH . H 6 HOH H 39 263 80 HOH HOH . H 6 HOH H 40 264 83 HOH HOH . H 6 HOH H 41 265 84 HOH HOH . H 6 HOH H 42 266 85 HOH HOH . H 6 HOH H 43 267 86 HOH HOH . H 6 HOH H 44 268 87 HOH HOH . H 6 HOH H 45 269 89 HOH HOH . H 6 HOH H 46 270 90 HOH HOH . H 6 HOH H 47 271 93 HOH HOH . H 6 HOH H 48 272 98 HOH HOH . H 6 HOH H 49 273 99 HOH HOH . H 6 HOH H 50 274 102 HOH HOH . H 6 HOH H 51 275 103 HOH HOH . H 6 HOH H 52 276 104 HOH HOH . H 6 HOH H 53 277 106 HOH HOH . H 6 HOH H 54 278 107 HOH HOH . H 6 HOH H 55 279 108 HOH HOH . H 6 HOH H 56 280 109 HOH HOH . H 6 HOH H 57 281 110 HOH HOH . H 6 HOH H 58 282 111 HOH HOH . H 6 HOH H 59 283 113 HOH HOH . H 6 HOH H 60 284 114 HOH HOH . H 6 HOH H 61 285 115 HOH HOH . H 6 HOH H 62 286 116 HOH HOH . H 6 HOH H 63 287 118 HOH HOH . I 6 HOH L 1 91 91 HOH HOH . I 6 HOH L 2 92 92 HOH HOH . I 6 HOH L 3 216 4 HOH HOH . I 6 HOH L 4 217 6 HOH HOH . I 6 HOH L 5 218 10 HOH HOH . I 6 HOH L 6 219 12 HOH HOH . I 6 HOH L 7 220 14 HOH HOH . I 6 HOH L 8 221 16 HOH HOH . I 6 HOH L 9 222 17 HOH HOH . I 6 HOH L 10 223 18 HOH HOH . I 6 HOH L 11 224 19 HOH HOH . I 6 HOH L 12 225 21 HOH HOH . I 6 HOH L 13 226 22 HOH HOH . I 6 HOH L 14 227 23 HOH HOH . I 6 HOH L 15 228 24 HOH HOH . I 6 HOH L 16 229 25 HOH HOH . I 6 HOH L 17 230 29 HOH HOH . I 6 HOH L 18 231 31 HOH HOH . I 6 HOH L 19 232 35 HOH HOH . I 6 HOH L 20 233 37 HOH HOH . I 6 HOH L 21 234 38 HOH HOH . I 6 HOH L 22 235 39 HOH HOH . I 6 HOH L 23 236 41 HOH HOH . I 6 HOH L 24 237 42 HOH HOH . I 6 HOH L 25 238 43 HOH HOH . I 6 HOH L 26 239 44 HOH HOH . I 6 HOH L 27 240 45 HOH HOH . I 6 HOH L 28 241 50 HOH HOH . I 6 HOH L 29 242 51 HOH HOH . I 6 HOH L 30 243 52 HOH HOH . I 6 HOH L 31 244 53 HOH HOH . I 6 HOH L 32 245 55 HOH HOH . I 6 HOH L 33 246 64 HOH HOH . I 6 HOH L 34 247 65 HOH HOH . I 6 HOH L 35 248 66 HOH HOH . I 6 HOH L 36 249 69 HOH HOH . I 6 HOH L 37 250 70 HOH HOH . I 6 HOH L 38 251 72 HOH HOH . I 6 HOH L 39 252 73 HOH HOH . I 6 HOH L 40 253 75 HOH HOH . I 6 HOH L 41 254 76 HOH HOH . I 6 HOH L 42 255 78 HOH HOH . I 6 HOH L 43 256 79 HOH HOH . I 6 HOH L 44 257 81 HOH HOH . I 6 HOH L 45 258 82 HOH HOH . I 6 HOH L 46 259 88 HOH HOH . I 6 HOH L 47 260 94 HOH HOH . I 6 HOH L 48 261 95 HOH HOH . I 6 HOH L 49 262 96 HOH HOH . I 6 HOH L 50 263 97 HOH HOH . I 6 HOH L 51 264 100 HOH HOH . I 6 HOH L 52 265 101 HOH HOH . I 6 HOH L 53 266 105 HOH HOH . I 6 HOH L 54 267 112 HOH HOH . I 6 HOH L 55 268 117 HOH HOH . I 6 HOH L 56 269 119 HOH HOH . I 6 HOH L 57 270 120 HOH HOH . I 6 HOH L 58 271 121 HOH HOH . I 6 HOH L 59 272 122 HOH HOH . I 6 HOH L 60 273 123 HOH HOH . I 6 HOH L 61 274 124 HOH HOH . I 6 HOH L 62 275 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 5 30.726 22.968 29.474 1 56.79 ? C1 NAG 1000 L 1 HETATM 2 C C2 NAG . . . F 5 31.279 23.869 30.654 1 117.78 ? C2 NAG 1000 L 1 HETATM 3 C C3 NAG . . . F 5 31.518 22.968 31.918 1 95.16 ? C3 NAG 1000 L 1 HETATM 4 C C4 NAG . . . F 5 30.22 22.195 32.229 1 92.46 ? C4 NAG 1000 L 1 HETATM 5 C C5 NAG . . . F 5 29.874 21.388 30.959 1 88.49 ? C5 NAG 1000 L 1 HETATM 6 C C6 NAG . . . F 5 28.639 20.485 31.15 1 91.39 ? C6 NAG 1000 L 1 HETATM 7 C C7 NAG . . . F 5 32.783 25.783 30.641 1 120.66 ? C7 NAG 1000 L 1 HETATM 8 C C8 NAG . . . F 5 34.095 26.333 30.18 1 121.15 ? C8 NAG 1000 L 1 HETATM 9 N N2 NAG . . . F 5 32.529 24.469 30.234 1 118.08 ? N2 NAG 1000 L 1 HETATM 10 O O3 NAG . . . F 5 31.819 23.819 32.976 1 99.58 ? O3 NAG 1000 L 1 HETATM 11 O O4 NAG . . . F 5 30.52 21.374 33.314 1 90.72 ? O4 NAG 1000 L 1 HETATM 12 O O5 NAG . . . F 5 29.57 22.291 29.973 1 77.24 ? O5 NAG 1000 L 1 HETATM 13 O O6 NAG . . . F 5 27.938 21.045 32.221 1 93.67 ? O6 NAG 1000 L 1 HETATM 14 O O7 NAG . . . F 5 31.983 26.416 31.319 1 121.63 ? O7 NAG 1000 L 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #