data_3U7W # _model_server_result.job_id G8chjRO1JyFJte8pSFRsJg _model_server_result.datetime_utc '2024-11-27 21:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":215}' # _entry.id 3U7W # _exptl.entry_id 3U7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U7W _cell.length_a 49.38 _cell.length_b 87.39 _cell.length_c 166.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 32 H CYS 32 1_555 A SG CYS 102 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 152 H CYS 144 1_555 A SG CYS 208 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 228 H CYS 220 1_555 B SG CYS 210 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 23 L CYS 23 1_555 B SG CYS 86 L CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 B SG CYS 130 L CYS 134 1_555 B SG CYS 190 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C PCA 1 H PCA 1 1_555 A N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B ND2 ASN 70 L ASN 70 1_555 F C1 NAG . L NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3U7W _atom_sites.fract_transf_matrix[1][1] 0.020251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL H 1 222 2 GOL GOL . D 3 GOL H 1 223 3 GOL GOL . E 4 SO4 H 1 224 1 SO4 SO4 . F 5 NAG L 1 1000 1000 NAG NAG . G 3 GOL L 1 215 1 GOL GOL . H 6 HOH H 1 225 1 HOH HOH . H 6 HOH H 2 226 2 HOH HOH . H 6 HOH H 3 227 3 HOH HOH . H 6 HOH H 4 228 5 HOH HOH . H 6 HOH H 5 229 7 HOH HOH . H 6 HOH H 6 230 8 HOH HOH . H 6 HOH H 7 231 9 HOH HOH . H 6 HOH H 8 232 11 HOH HOH . H 6 HOH H 9 233 13 HOH HOH . H 6 HOH H 10 234 15 HOH HOH . H 6 HOH H 11 235 20 HOH HOH . H 6 HOH H 12 236 26 HOH HOH . H 6 HOH H 13 237 27 HOH HOH . H 6 HOH H 14 238 28 HOH HOH . H 6 HOH H 15 239 30 HOH HOH . H 6 HOH H 16 240 32 HOH HOH . H 6 HOH H 17 241 33 HOH HOH . H 6 HOH H 18 242 34 HOH HOH . H 6 HOH H 19 243 36 HOH HOH . H 6 HOH H 20 244 40 HOH HOH . H 6 HOH H 21 245 46 HOH HOH . H 6 HOH H 22 246 47 HOH HOH . H 6 HOH H 23 247 48 HOH HOH . H 6 HOH H 24 248 49 HOH HOH . H 6 HOH H 25 249 54 HOH HOH . H 6 HOH H 26 250 56 HOH HOH . H 6 HOH H 27 251 57 HOH HOH . H 6 HOH H 28 252 58 HOH HOH . H 6 HOH H 29 253 59 HOH HOH . H 6 HOH H 30 254 60 HOH HOH . H 6 HOH H 31 255 61 HOH HOH . H 6 HOH H 32 256 62 HOH HOH . H 6 HOH H 33 257 63 HOH HOH . H 6 HOH H 34 258 67 HOH HOH . H 6 HOH H 35 259 68 HOH HOH . H 6 HOH H 36 260 71 HOH HOH . H 6 HOH H 37 261 74 HOH HOH . H 6 HOH H 38 262 77 HOH HOH . H 6 HOH H 39 263 80 HOH HOH . H 6 HOH H 40 264 83 HOH HOH . H 6 HOH H 41 265 84 HOH HOH . H 6 HOH H 42 266 85 HOH HOH . H 6 HOH H 43 267 86 HOH HOH . H 6 HOH H 44 268 87 HOH HOH . H 6 HOH H 45 269 89 HOH HOH . H 6 HOH H 46 270 90 HOH HOH . H 6 HOH H 47 271 93 HOH HOH . H 6 HOH H 48 272 98 HOH HOH . H 6 HOH H 49 273 99 HOH HOH . H 6 HOH H 50 274 102 HOH HOH . H 6 HOH H 51 275 103 HOH HOH . H 6 HOH H 52 276 104 HOH HOH . H 6 HOH H 53 277 106 HOH HOH . H 6 HOH H 54 278 107 HOH HOH . H 6 HOH H 55 279 108 HOH HOH . H 6 HOH H 56 280 109 HOH HOH . H 6 HOH H 57 281 110 HOH HOH . H 6 HOH H 58 282 111 HOH HOH . H 6 HOH H 59 283 113 HOH HOH . H 6 HOH H 60 284 114 HOH HOH . H 6 HOH H 61 285 115 HOH HOH . H 6 HOH H 62 286 116 HOH HOH . H 6 HOH H 63 287 118 HOH HOH . I 6 HOH L 1 91 91 HOH HOH . I 6 HOH L 2 92 92 HOH HOH . I 6 HOH L 3 216 4 HOH HOH . I 6 HOH L 4 217 6 HOH HOH . I 6 HOH L 5 218 10 HOH HOH . I 6 HOH L 6 219 12 HOH HOH . I 6 HOH L 7 220 14 HOH HOH . I 6 HOH L 8 221 16 HOH HOH . I 6 HOH L 9 222 17 HOH HOH . I 6 HOH L 10 223 18 HOH HOH . I 6 HOH L 11 224 19 HOH HOH . I 6 HOH L 12 225 21 HOH HOH . I 6 HOH L 13 226 22 HOH HOH . I 6 HOH L 14 227 23 HOH HOH . I 6 HOH L 15 228 24 HOH HOH . I 6 HOH L 16 229 25 HOH HOH . I 6 HOH L 17 230 29 HOH HOH . I 6 HOH L 18 231 31 HOH HOH . I 6 HOH L 19 232 35 HOH HOH . I 6 HOH L 20 233 37 HOH HOH . I 6 HOH L 21 234 38 HOH HOH . I 6 HOH L 22 235 39 HOH HOH . I 6 HOH L 23 236 41 HOH HOH . I 6 HOH L 24 237 42 HOH HOH . I 6 HOH L 25 238 43 HOH HOH . I 6 HOH L 26 239 44 HOH HOH . I 6 HOH L 27 240 45 HOH HOH . I 6 HOH L 28 241 50 HOH HOH . I 6 HOH L 29 242 51 HOH HOH . I 6 HOH L 30 243 52 HOH HOH . I 6 HOH L 31 244 53 HOH HOH . I 6 HOH L 32 245 55 HOH HOH . I 6 HOH L 33 246 64 HOH HOH . I 6 HOH L 34 247 65 HOH HOH . I 6 HOH L 35 248 66 HOH HOH . I 6 HOH L 36 249 69 HOH HOH . I 6 HOH L 37 250 70 HOH HOH . I 6 HOH L 38 251 72 HOH HOH . I 6 HOH L 39 252 73 HOH HOH . I 6 HOH L 40 253 75 HOH HOH . I 6 HOH L 41 254 76 HOH HOH . I 6 HOH L 42 255 78 HOH HOH . I 6 HOH L 43 256 79 HOH HOH . I 6 HOH L 44 257 81 HOH HOH . I 6 HOH L 45 258 82 HOH HOH . I 6 HOH L 46 259 88 HOH HOH . I 6 HOH L 47 260 94 HOH HOH . I 6 HOH L 48 261 95 HOH HOH . I 6 HOH L 49 262 96 HOH HOH . I 6 HOH L 50 263 97 HOH HOH . I 6 HOH L 51 264 100 HOH HOH . I 6 HOH L 52 265 101 HOH HOH . I 6 HOH L 53 266 105 HOH HOH . I 6 HOH L 54 267 112 HOH HOH . I 6 HOH L 55 268 117 HOH HOH . I 6 HOH L 56 269 119 HOH HOH . I 6 HOH L 57 270 120 HOH HOH . I 6 HOH L 58 271 121 HOH HOH . I 6 HOH L 59 272 122 HOH HOH . I 6 HOH L 60 273 123 HOH HOH . I 6 HOH L 61 274 124 HOH HOH . I 6 HOH L 62 275 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 2.692 -0.972 29.787 1 52 ? C1 GOL 215 L 1 HETATM 2 O O1 GOL . . . G 3 1.413 -0.513 29.469 1 49.75 ? O1 GOL 215 L 1 HETATM 3 C C2 GOL . . . G 3 2.456 -2.231 30.655 1 53.18 ? C2 GOL 215 L 1 HETATM 4 O O2 GOL . . . G 3 2.045 -3.316 29.873 1 59.08 ? O2 GOL 215 L 1 HETATM 5 C C3 GOL . . . G 3 3.731 -2.578 31.454 1 43.98 ? C3 GOL 215 L 1 HETATM 6 O O3 GOL . . . G 3 3.267 -3.352 32.504 1 41.69 ? O3 GOL 215 L 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #