data_3U88
#
_model_server_result.job_id            B6xqozB50LRvsvotxHFrFw 
_model_server_result.datetime_utc      '2024-11-16 06:25:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u88 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":108}' 
#
_entry.id    3U88 
#
_exptl.entry_id    3U88 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              176.174 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-CANAVANINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3U88 
_cell.length_a            187.99 
_cell.length_b            187.99 
_cell.length_c            238.417 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U88 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,H,I,J,K,L,M,N,O,V,W,X,Y,Z 1 1 
B,E,F,P,Q,R,S,T,U,AA,BA,CA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 J N N 
? 5 R N N 
? 5 X N N 
? 5 Y N N 
#
_chem_comp.formula           'C5 H12 N4 O3' 
_chem_comp.formula_weight    176.174 
_chem_comp.id                GGB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              L-CANAVANINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     'L-2-AMINO-4-(GUANIDINOOXY)BUTYRIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GGB sing 208 n n 
N H GGB sing 209 n n 
N H2 GGB sing 210 n n 
CA CB GGB sing 211 n n 
CA C GGB sing 212 n n 
CA HA GGB sing 213 n n 
CB CG GGB sing 214 n n 
CB HCB1 GGB sing 215 n n 
CB HCB2 GGB sing 216 n n 
CG OD GGB sing 217 n n 
CG HCG1 GGB sing 218 n n 
CG HCG2 GGB sing 219 n n 
C O GGB doub 220 n n 
C OXT GGB sing 221 n n 
OD NE GGB sing 222 n n 
NE CZ GGB sing 223 n n 
NE HNE GGB sing 224 n n 
CZ NH1 GGB doub 225 e n 
CZ NH2 GGB sing 226 n n 
NH1 HN1 GGB sing 227 n n 
NH2 HN21 GGB sing 228 n n 
NH2 HN22 GGB sing 229 n n 
OXT HXT GGB sing 230 n n 
#
_atom_sites.entry_id                     3U88 
_atom_sites.fract_transf_matrix[1][1]    0.005319 
_atom_sites.fract_transf_matrix[1][2]    0.003071 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006142 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004194 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 CHD A 1 611 101 CHD CHD . 
H 5 GGB A 1 613 105 GGB CAN . 
I 6 0BR A 1 612 612 0BR QUI . 
J 5 GGB A 1 614 107 GGB CAN . 
K 7 GLV A 1 615 110 GLV GLX . 
L 7 GLV A 1 616 111 GLV GLX . 
M 7 GLV A 1 617 112 GLV GLX . 
N 8 SO4 A 1 618 3 SO4 SO4 . 
O 8 SO4 A 1 619 8 SO4 SO4 . 
P 4 CHD B 1 611 102 CHD CHD . 
Q 6 0BR B 1 612 612 0BR QUI . 
R 5 GGB B 1 615 106 GGB CAN . 
S 7 GLV B 1 616 115 GLV GLX . 
T 8 SO4 B 1 617 12 SO4 SO4 . 
U 8 SO4 B 1 618 13 SO4 SO4 . 
V 8 SO4 M 1 2 2 SO4 SO4 . 
W 8 SO4 M 1 154 14 SO4 SO4 . 
X 5 GGB C 1 108 108 GGB CAN . 
Y 5 GGB C 1 109 109 GGB CAN . 
Z 7 GLV C 1 113 113 GLV GLX . 
AA 8 SO4 N 1 1 1 SO4 SO4 . 
BA 8 SO4 N 1 154 10 SO4 SO4 . 
CA 7 GLV D 1 114 114 GLV GLX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GGB . . . X 5 -50.575 17.13 -8.491 1 131.54 ? N GGB 108 C 1 
HETATM 2 C CA GGB . . . X 5 -50.125 15.832 -8.057 1 132.76 ? CA GGB 108 C 1 
HETATM 3 C CB GGB . . . X 5 -48.761 15.932 -7.442 1 123.67 ? CB GGB 108 C 1 
HETATM 4 C CG GGB . . . X 5 -47.784 16.512 -8.46 1 116.51 ? CG GGB 108 C 1 
HETATM 5 C C GGB . . . X 5 -51.11 15.267 -7.045 1 133.93 ? C GGB 108 C 1 
HETATM 6 O OD GGB . . . X 5 -48.301 17.706 -8.971 1 117.47 ? OD GGB 108 C 1 
HETATM 7 N NE GGB . . . X 5 -47.613 18.837 -8.826 1 120.95 ? NE GGB 108 C 1 
HETATM 8 C CZ GGB . . . X 5 -47.053 19.447 -9.93 1 118.96 ? CZ GGB 108 C 1 
HETATM 9 N NH1 GGB . . . X 5 -47.514 19.336 -11.215 1 113.16 ? NH1 GGB 108 C 1 
HETATM 10 N NH2 GGB . . . X 5 -45.838 20.021 -10.004 1 114.61 ? NH2 GGB 108 C 1 
HETATM 11 O O GGB . . . X 5 -52.288 15.682 -7.309 1 132.44 ? O GGB 108 C 1 
HETATM 12 O OXT GGB . . . X 5 -50.519 14.523 -6.192 1 126.04 ? OXT GGB 108 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#