data_3U88 # _model_server_result.job_id oHUFhoRUxSW0SvKl8SpdMA _model_server_result.datetime_utc '2024-11-16 06:39:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":611}' # _entry.id 3U88 # _exptl.entry_id 3U88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U88 _cell.length_a 187.99 _cell.length_b 187.99 _cell.length_c 238.417 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,K,L,M,N,O,V,W,X,Y,Z 1 1 B,E,F,P,Q,R,S,T,U,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 P N N # _chem_comp.formula 'C24 H40 O5' _chem_comp.formula_weight 408.571 _chem_comp.id CHD _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CHD sing 123 n n C1 C10 CHD sing 124 n n C1 H11 CHD sing 125 n n C1 H12A CHD sing 126 n n C2 C3 CHD sing 127 n n C2 H21 CHD sing 128 n n C2 H22 CHD sing 129 n n C3 O3 CHD sing 130 n n C3 C4 CHD sing 131 n n C3 H3 CHD sing 132 n n O3 HO3 CHD sing 133 n n C4 C5 CHD sing 134 n n C4 H41 CHD sing 135 n n C4 H42 CHD sing 136 n n C5 C6 CHD sing 137 n n C5 C10 CHD sing 138 n n C5 H5 CHD sing 139 n n C6 C7 CHD sing 140 n n C6 H61 CHD sing 141 n n C6 H62 CHD sing 142 n n C7 O7 CHD sing 143 n n C7 C8 CHD sing 144 n n C7 H7 CHD sing 145 n n O7 HO7 CHD sing 146 n n C8 C9 CHD sing 147 n n C8 C14 CHD sing 148 n n C8 H8 CHD sing 149 n n C9 C10 CHD sing 150 n n C9 C11 CHD sing 151 n n C9 H9 CHD sing 152 n n C10 C19 CHD sing 153 n n C11 C12 CHD sing 154 n n C11 H111 CHD sing 155 n n C11 H112 CHD sing 156 n n C12 O12 CHD sing 157 n n C12 C13 CHD sing 158 n n C12 H12 CHD sing 159 n n O12 HO12 CHD sing 160 n n C13 C14 CHD sing 161 n n C13 C17 CHD sing 162 n n C13 C18 CHD sing 163 n n C14 C15 CHD sing 164 n n C14 H14 CHD sing 165 n n C15 C16 CHD sing 166 n n C15 H151 CHD sing 167 n n C15 H152 CHD sing 168 n n C16 C17 CHD sing 169 n n C16 H161 CHD sing 170 n n C16 H162 CHD sing 171 n n C17 C20 CHD sing 172 n n C17 H17 CHD sing 173 n n C18 H181 CHD sing 174 n n C18 H182 CHD sing 175 n n C18 H183 CHD sing 176 n n C19 H191 CHD sing 177 n n C19 H192 CHD sing 178 n n C19 H193 CHD sing 179 n n C20 C21 CHD sing 180 n n C20 C22 CHD sing 181 n n C20 H20 CHD sing 182 n n C21 H211 CHD sing 183 n n C21 H212 CHD sing 184 n n C21 H213 CHD sing 185 n n C22 C23 CHD sing 186 n n C22 H221 CHD sing 187 n n C22 H222 CHD sing 188 n n C23 C24 CHD sing 189 n n C23 H231 CHD sing 190 n n C23 H232 CHD sing 191 n n O25 C24 CHD doub 192 n n C24 O26 CHD sing 193 n n O26 H26 CHD sing 194 n n # _atom_sites.entry_id 3U88 _atom_sites.fract_transf_matrix[1][1] 0.005319 _atom_sites.fract_transf_matrix[1][2] 0.003071 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CHD A 1 611 101 CHD CHD . H 5 GGB A 1 613 105 GGB CAN . I 6 0BR A 1 612 612 0BR QUI . J 5 GGB A 1 614 107 GGB CAN . K 7 GLV A 1 615 110 GLV GLX . L 7 GLV A 1 616 111 GLV GLX . M 7 GLV A 1 617 112 GLV GLX . N 8 SO4 A 1 618 3 SO4 SO4 . O 8 SO4 A 1 619 8 SO4 SO4 . P 4 CHD B 1 611 102 CHD CHD . Q 6 0BR B 1 612 612 0BR QUI . R 5 GGB B 1 615 106 GGB CAN . S 7 GLV B 1 616 115 GLV GLX . T 8 SO4 B 1 617 12 SO4 SO4 . U 8 SO4 B 1 618 13 SO4 SO4 . V 8 SO4 M 1 2 2 SO4 SO4 . W 8 SO4 M 1 154 14 SO4 SO4 . X 5 GGB C 1 108 108 GGB CAN . Y 5 GGB C 1 109 109 GGB CAN . Z 7 GLV C 1 113 113 GLV GLX . AA 8 SO4 N 1 1 1 SO4 SO4 . BA 8 SO4 N 1 154 10 SO4 SO4 . CA 7 GLV D 1 114 114 GLV GLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CHD . . . G 4 -53.199 66.397 13.972 1 64.46 ? C1 CHD 611 A 1 HETATM 2 C C2 CHD . . . G 4 -51.79 65.921 13.801 1 58.12 ? C2 CHD 611 A 1 HETATM 3 C C3 CHD . . . G 4 -51.456 65.519 12.401 0.74 64.42 ? C3 CHD 611 A 1 HETATM 4 O O3 CHD . . . G 4 -50.252 64.828 12.401 1 74.64 ? O3 CHD 611 A 1 HETATM 5 C C4 CHD . . . G 4 -52.532 64.664 11.815 1 58.72 ? C4 CHD 611 A 1 HETATM 6 C C5 CHD . . . G 4 -53.951 65.151 11.991 1 59.81 ? C5 CHD 611 A 1 HETATM 7 C C6 CHD . . . G 4 -54.927 64.156 11.484 1 63.49 ? C6 CHD 611 A 1 HETATM 8 C C7 CHD . . . G 4 -55.196 62.959 12.339 0.72 68.75 ? C7 CHD 611 A 1 HETATM 9 O O7 CHD . . . G 4 -54.078 62.149 12.43 1 61.21 ? O7 CHD 611 A 1 HETATM 10 C C8 CHD . . . G 4 -55.574 63.375 13.729 1 63.71 ? C8 CHD 611 A 1 HETATM 11 C C9 CHD . . . G 4 -54.518 64.299 14.319 1 60.25 ? C9 CHD 611 A 1 HETATM 12 C C10 CHD . . . G 4 -54.255 65.511 13.4 0.28 68.59 ? C10 CHD 611 A 1 HETATM 13 C C11 CHD . . . G 4 -54.96 64.722 15.72 1 62.22 ? C11 CHD 611 A 1 HETATM 14 C C12 CHD . . . G 4 -55.358 63.613 16.697 0.97 65.74 ? C12 CHD 611 A 1 HETATM 15 O O12 CHD . . . G 4 -54.228 62.985 17.142 1 56.51 ? O12 CHD 611 A 1 HETATM 16 C C13 CHD . . . G 4 -56.314 62.624 16.138 0.86 68.6 ? C13 CHD 611 A 1 HETATM 17 C C14 CHD . . . G 4 -55.81 62.256 14.764 0.97 68.41 ? C14 CHD 611 A 1 HETATM 18 C C15 CHD . . . G 4 -56.797 61.207 14.35 1 68.67 ? C15 CHD 611 A 1 HETATM 19 C C16 CHD . . . G 4 -56.984 60.382 15.61 0.97 64.51 ? C16 CHD 611 A 1 HETATM 20 C C17 CHD . . . G 4 -56.454 61.218 16.725 0.94 67.91 ? C17 CHD 611 A 1 HETATM 21 C C18 CHD . . . G 4 -57.7 63.183 16.221 1 58.9 ? C18 CHD 611 A 1 HETATM 22 C C19 CHD . . . G 4 -55.483 66.34 13.467 1 56.94 ? C19 CHD 611 A 1 HETATM 23 C C20 CHD . . . G 4 -57.261 61.01 17.978 0.96 64.8 ? C20 CHD 611 A 1 HETATM 24 C C21 CHD . . . G 4 -56.732 61.789 19.119 1 55.42 ? C21 CHD 611 A 1 HETATM 25 C C22 CHD . . . G 4 -57.176 59.567 18.413 0.95 66.08 ? C22 CHD 611 A 1 HETATM 26 C C23 CHD . . . G 4 -57.979 59.26 19.664 1 68.16 ? C23 CHD 611 A 1 HETATM 27 O O25 CHD . . . G 4 -56.802 57.311 20.005 1 72.43 ? O25 CHD 611 A 1 HETATM 28 C C24 CHD . . . G 4 -57.974 57.771 19.892 0.33 73.76 ? C24 CHD 611 A 1 HETATM 29 O O26 CHD . . . G 4 -59.156 57.33 19.913 1 68.3 ? O26 CHD 611 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #