data_3U88 # _model_server_result.job_id od3weFOxugtiIwKhlR_NOw _model_server_result.datetime_utc '2024-11-16 06:27:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":611}' # _entry.id 3U88 # _exptl.entry_id 3U88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U88 _cell.length_a 187.99 _cell.length_b 187.99 _cell.length_c 238.417 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,K,L,M,N,O,V,W,X,Y,Z 1 1 B,E,F,P,Q,R,S,T,U,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 P N N # _chem_comp.formula 'C24 H40 O5' _chem_comp.formula_weight 408.571 _chem_comp.id CHD _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CHD sing 123 n n C1 C10 CHD sing 124 n n C1 H11 CHD sing 125 n n C1 H12A CHD sing 126 n n C2 C3 CHD sing 127 n n C2 H21 CHD sing 128 n n C2 H22 CHD sing 129 n n C3 O3 CHD sing 130 n n C3 C4 CHD sing 131 n n C3 H3 CHD sing 132 n n O3 HO3 CHD sing 133 n n C4 C5 CHD sing 134 n n C4 H41 CHD sing 135 n n C4 H42 CHD sing 136 n n C5 C6 CHD sing 137 n n C5 C10 CHD sing 138 n n C5 H5 CHD sing 139 n n C6 C7 CHD sing 140 n n C6 H61 CHD sing 141 n n C6 H62 CHD sing 142 n n C7 O7 CHD sing 143 n n C7 C8 CHD sing 144 n n C7 H7 CHD sing 145 n n O7 HO7 CHD sing 146 n n C8 C9 CHD sing 147 n n C8 C14 CHD sing 148 n n C8 H8 CHD sing 149 n n C9 C10 CHD sing 150 n n C9 C11 CHD sing 151 n n C9 H9 CHD sing 152 n n C10 C19 CHD sing 153 n n C11 C12 CHD sing 154 n n C11 H111 CHD sing 155 n n C11 H112 CHD sing 156 n n C12 O12 CHD sing 157 n n C12 C13 CHD sing 158 n n C12 H12 CHD sing 159 n n O12 HO12 CHD sing 160 n n C13 C14 CHD sing 161 n n C13 C17 CHD sing 162 n n C13 C18 CHD sing 163 n n C14 C15 CHD sing 164 n n C14 H14 CHD sing 165 n n C15 C16 CHD sing 166 n n C15 H151 CHD sing 167 n n C15 H152 CHD sing 168 n n C16 C17 CHD sing 169 n n C16 H161 CHD sing 170 n n C16 H162 CHD sing 171 n n C17 C20 CHD sing 172 n n C17 H17 CHD sing 173 n n C18 H181 CHD sing 174 n n C18 H182 CHD sing 175 n n C18 H183 CHD sing 176 n n C19 H191 CHD sing 177 n n C19 H192 CHD sing 178 n n C19 H193 CHD sing 179 n n C20 C21 CHD sing 180 n n C20 C22 CHD sing 181 n n C20 H20 CHD sing 182 n n C21 H211 CHD sing 183 n n C21 H212 CHD sing 184 n n C21 H213 CHD sing 185 n n C22 C23 CHD sing 186 n n C22 H221 CHD sing 187 n n C22 H222 CHD sing 188 n n C23 C24 CHD sing 189 n n C23 H231 CHD sing 190 n n C23 H232 CHD sing 191 n n O25 C24 CHD doub 192 n n C24 O26 CHD sing 193 n n O26 H26 CHD sing 194 n n # _atom_sites.entry_id 3U88 _atom_sites.fract_transf_matrix[1][1] 0.005319 _atom_sites.fract_transf_matrix[1][2] 0.003071 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CHD A 1 611 101 CHD CHD . H 5 GGB A 1 613 105 GGB CAN . I 6 0BR A 1 612 612 0BR QUI . J 5 GGB A 1 614 107 GGB CAN . K 7 GLV A 1 615 110 GLV GLX . L 7 GLV A 1 616 111 GLV GLX . M 7 GLV A 1 617 112 GLV GLX . N 8 SO4 A 1 618 3 SO4 SO4 . O 8 SO4 A 1 619 8 SO4 SO4 . P 4 CHD B 1 611 102 CHD CHD . Q 6 0BR B 1 612 612 0BR QUI . R 5 GGB B 1 615 106 GGB CAN . S 7 GLV B 1 616 115 GLV GLX . T 8 SO4 B 1 617 12 SO4 SO4 . U 8 SO4 B 1 618 13 SO4 SO4 . V 8 SO4 M 1 2 2 SO4 SO4 . W 8 SO4 M 1 154 14 SO4 SO4 . X 5 GGB C 1 108 108 GGB CAN . Y 5 GGB C 1 109 109 GGB CAN . Z 7 GLV C 1 113 113 GLV GLX . AA 8 SO4 N 1 1 1 SO4 SO4 . BA 8 SO4 N 1 154 10 SO4 SO4 . CA 7 GLV D 1 114 114 GLV GLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CHD . . . P 4 -56.367 63.694 23.241 1 57.83 ? C1 CHD 611 B 1 HETATM 2 C C2 CHD . . . P 4 -56.719 62.256 22.986 1 52.19 ? C2 CHD 611 B 1 HETATM 3 C C3 CHD . . . P 4 -56.349 61.34 24.11 0.91 57.5 ? C3 CHD 611 B 1 HETATM 4 O O3 CHD . . . P 4 -56.433 60.028 23.681 1 66.51 ? O3 CHD 611 B 1 HETATM 5 C C4 CHD . . . P 4 -54.967 61.617 24.597 1 58.25 ? C4 CHD 611 B 1 HETATM 6 C C5 CHD . . . P 4 -54.668 63.076 24.868 1 58.93 ? C5 CHD 611 B 1 HETATM 7 C C6 CHD . . . P 4 -53.266 63.278 25.315 1 60.35 ? C6 CHD 611 B 1 HETATM 8 C C7 CHD . . . P 4 -52.202 63.096 24.287 0.93 67.38 ? C7 CHD 611 B 1 HETATM 9 O O7 CHD . . . P 4 -52.13 61.752 23.973 1 65.25 ? O7 CHD 611 B 1 HETATM 10 C C8 CHD . . . P 4 -52.481 63.917 23.048 1 63.7 ? C8 CHD 611 B 1 HETATM 11 C C9 CHD . . . P 4 -53.92 63.719 22.552 1 59.89 ? C9 CHD 611 B 1 HETATM 12 C C10 CHD . . . P 4 -54.961 63.93 23.69 0.83 62.09 ? C10 CHD 611 B 1 HETATM 13 C C11 CHD . . . P 4 -54.155 64.566 21.297 1 53.95 ? C11 CHD 611 B 1 HETATM 14 C C12 CHD . . . P 4 -53.157 64.337 20.165 0.92 62.55 ? C12 CHD 611 B 1 HETATM 15 O O12 CHD . . . P 4 -53.291 63.059 19.7 1 55.41 ? O12 CHD 611 B 1 HETATM 16 C C13 CHD . . . P 4 -51.763 64.59 20.606 0.82 67.6 ? C13 CHD 611 B 1 HETATM 17 C C14 CHD . . . P 4 -51.544 63.732 21.829 1 65.08 ? C14 CHD 611 B 1 HETATM 18 C C15 CHD . . . P 4 -50.096 63.965 22.111 1 63.47 ? C15 CHD 611 B 1 HETATM 19 C C16 CHD . . . P 4 -49.452 63.968 20.742 0.67 67.78 ? C16 CHD 611 B 1 HETATM 20 C C17 CHD . . . P 4 -50.566 64.153 19.77 1 68.93 ? C17 CHD 611 B 1 HETATM 21 C C18 CHD . . . P 4 -51.526 66.058 20.764 1 54.77 ? C18 CHD 611 B 1 HETATM 22 C C19 CHD . . . P 4 -54.937 65.369 24.054 1 52.31 ? C19 CHD 611 B 1 HETATM 23 C C20 CHD . . . P 4 -50.135 65.022 18.626 1 62.11 ? C20 CHD 611 B 1 HETATM 24 C C21 CHD . . . P 4 -51.14 64.978 17.546 1 60.38 ? C21 CHD 611 B 1 HETATM 25 C C22 CHD . . . P 4 -48.825 64.526 18.045 0.81 66.36 ? C22 CHD 611 B 1 HETATM 26 C C23 CHD . . . P 4 -48.652 64.698 16.542 0.87 75.38 ? C23 CHD 611 B 1 HETATM 27 O O25 CHD . . . P 4 -46.455 65.237 16.244 1 73.32 ? O25 CHD 611 B 1 HETATM 28 C C24 CHD . . . P 4 -47.258 64.272 16.144 0.53 77.37 ? C24 CHD 611 B 1 HETATM 29 O O26 CHD . . . P 4 -47.207 63.05 15.805 1 75.09 ? O26 CHD 611 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 539 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #