data_3U88 # _model_server_result.job_id 374fhMVTbDCMVsDiz8QWIQ _model_server_result.datetime_utc '2024-11-16 07:00:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":617}' # _entry.id 3U88 # _exptl.entry_id 3U88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 74.035 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYOXYLIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U88 _cell.length_a 187.99 _cell.length_b 187.99 _cell.length_c 238.417 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,K,L,M,N,O,V,W,X,Y,Z 1 1 B,E,F,P,Q,R,S,T,U,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N ? 7 M N N ? 7 S N N ? 7 Z N N ? 7 CA N N # _chem_comp.formula 'C2 H2 O3' _chem_comp.formula_weight 74.035 _chem_comp.id GLV _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYOXALATE;GLYOXYLATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GLV doub 268 n n C1 C2 GLV sing 269 n n C1 H1 GLV sing 270 n n C2 O2 GLV doub 271 n n C2 O3 GLV sing 272 n n O3 HO3 GLV sing 273 n n # _atom_sites.entry_id 3U88 _atom_sites.fract_transf_matrix[1][1] 0.005319 _atom_sites.fract_transf_matrix[1][2] 0.003071 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CHD A 1 611 101 CHD CHD . H 5 GGB A 1 613 105 GGB CAN . I 6 0BR A 1 612 612 0BR QUI . J 5 GGB A 1 614 107 GGB CAN . K 7 GLV A 1 615 110 GLV GLX . L 7 GLV A 1 616 111 GLV GLX . M 7 GLV A 1 617 112 GLV GLX . N 8 SO4 A 1 618 3 SO4 SO4 . O 8 SO4 A 1 619 8 SO4 SO4 . P 4 CHD B 1 611 102 CHD CHD . Q 6 0BR B 1 612 612 0BR QUI . R 5 GGB B 1 615 106 GGB CAN . S 7 GLV B 1 616 115 GLV GLX . T 8 SO4 B 1 617 12 SO4 SO4 . U 8 SO4 B 1 618 13 SO4 SO4 . V 8 SO4 M 1 2 2 SO4 SO4 . W 8 SO4 M 1 154 14 SO4 SO4 . X 5 GGB C 1 108 108 GGB CAN . Y 5 GGB C 1 109 109 GGB CAN . Z 7 GLV C 1 113 113 GLV GLX . AA 8 SO4 N 1 1 1 SO4 SO4 . BA 8 SO4 N 1 154 10 SO4 SO4 . CA 7 GLV D 1 114 114 GLV GLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLV . . . M 7 -79.64 39.564 51.837 0.96 73.69 ? C1 GLV 617 A 1 HETATM 2 O O1 GLV . . . M 7 -79.494 39.988 50.699 1 72.89 ? O1 GLV 617 A 1 HETATM 3 C C2 GLV . . . M 7 -80.903 38.87 52.223 1 82.85 ? C2 GLV 617 A 1 HETATM 4 O O2 GLV . . . M 7 -81.88 39.619 51.969 0.76 85.98 ? O2 GLV 617 A 1 HETATM 5 O O3 GLV . . . M 7 -80.645 37.735 52.697 0.96 88.62 ? O3 GLV 617 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #