data_3U8B
#
_model_server_result.job_id            ouZ1Ve1omMqBO1UZByNGpg 
_model_server_result.datetime_utc      '2024-11-26 18:03:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":127}' 
#
_entry.id    3U8B 
#
_exptl.entry_id    3U8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3U8B 
_cell.length_a            74.683 
_cell.length_b            74.683 
_cell.length_c            89.159 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -37.3415 64.677375 14.859833 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 A SG CYS 43 A CYS 43 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 A SG CYS 49 A CYS 49 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 50 A CYS 50 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 A SG CYS 59 A CYS 59 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 A SG CYS 77 A CYS 77 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc1 A O PHE 23 A PHE 23 1_555 C CA CA . A CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc2 A O GLY 25 A GLY 25 1_555 C CA CA . A CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc3 A O HIS 27 A HIS 27 1_555 D CA CA . A CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc4 A O GLY 29 A GLY 29 1_555 D CA CA . A CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc5 A O GLY 31 A GLY 31 1_555 D CA CA . A CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc6 A OD2 ASP 48 A ASP 48 1_555 D CA CA . A CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc7 A OD1 ASP 48 A ASP 48 1_555 D CA CA . A CA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc8 A O TYR 112 A TYR 112 1_555 C CA CA . A CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc9 A OD1 ASN 114 A ASN 114 1_555 C CA CA . A CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc10 C CA CA . A CA 126 1_555 F O HOH . A HOH 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc11 C CA CA . A CA 126 1_555 F O HOH . A HOH 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3U8B 
_atom_sites.fract_transf_matrix[1][1]    0.01339 
_atom_sites.fract_transf_matrix[1][2]    0.007731 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015461 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011216 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 125 1 CL CL . 
C 3 CA A 1 126 1 CA CA . 
D 3 CA A 1 127 4 CA CA . 
E 2 CL A 1 128 1 CL CL . 
F 4 HOH A 1 129 1 HOH HOH . 
F 4 HOH A 2 130 130 HOH HOH . 
F 4 HOH A 3 131 131 HOH HOH . 
F 4 HOH A 4 132 132 HOH HOH . 
F 4 HOH A 5 133 133 HOH HOH . 
F 4 HOH A 6 134 134 HOH HOH . 
F 4 HOH A 7 135 4 HOH HOH . 
F 4 HOH A 8 136 136 HOH HOH . 
F 4 HOH A 9 137 137 HOH HOH . 
F 4 HOH A 10 138 138 HOH HOH . 
F 4 HOH A 11 139 139 HOH HOH . 
F 4 HOH A 12 140 140 HOH HOH . 
F 4 HOH A 13 141 141 HOH HOH . 
F 4 HOH A 14 142 142 HOH HOH . 
F 4 HOH A 15 143 143 HOH HOH . 
F 4 HOH A 16 144 144 HOH HOH . 
F 4 HOH A 17 145 145 HOH HOH . 
F 4 HOH A 18 146 146 HOH HOH . 
F 4 HOH A 19 147 147 HOH HOH . 
F 4 HOH A 20 148 6 HOH HOH . 
F 4 HOH A 21 149 9 HOH HOH . 
F 4 HOH A 22 150 10 HOH HOH . 
F 4 HOH A 23 151 13 HOH HOH . 
F 4 HOH A 24 152 16 HOH HOH . 
F 4 HOH A 25 153 23 HOH HOH . 
F 4 HOH A 26 154 24 HOH HOH . 
F 4 HOH A 27 155 26 HOH HOH . 
F 4 HOH A 28 156 28 HOH HOH . 
F 4 HOH A 29 157 32 HOH HOH . 
F 4 HOH A 30 158 35 HOH HOH . 
F 4 HOH A 31 159 39 HOH HOH . 
F 4 HOH A 32 160 43 HOH HOH . 
F 4 HOH A 33 161 54 HOH HOH . 
F 4 HOH A 34 162 57 HOH HOH . 
F 4 HOH A 35 163 58 HOH HOH . 
F 4 HOH A 36 164 63 HOH HOH . 
F 4 HOH A 37 165 64 HOH HOH . 
F 4 HOH A 38 166 69 HOH HOH . 
F 4 HOH A 39 167 71 HOH HOH . 
F 4 HOH A 40 168 75 HOH HOH . 
F 4 HOH A 41 169 77 HOH HOH . 
F 4 HOH A 42 170 81 HOH HOH . 
F 4 HOH A 43 171 89 HOH HOH . 
F 4 HOH A 44 172 92 HOH HOH . 
F 4 HOH A 45 173 94 HOH HOH . 
F 4 HOH A 46 174 95 HOH HOH . 
F 4 HOH A 47 175 99 HOH HOH . 
F 4 HOH A 48 176 106 HOH HOH . 
F 4 HOH A 49 177 113 HOH HOH . 
F 4 HOH A 50 178 118 HOH HOH . 
F 4 HOH A 51 179 120 HOH HOH . 
F 4 HOH A 52 180 123 HOH HOH . 
F 4 HOH A 53 181 128 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -21.758 
_atom_site.Cartn_y               27.231 
_atom_site.Cartn_z               -0.266 
_atom_site.occupancy             0.63 
_atom_site.B_iso_or_equiv        44.55 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           127 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           396 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#