data_3U90 # _model_server_result.job_id PQwyv52ss9sj5Bi5sFZ4gA _model_server_result.datetime_utc '2024-11-12 20:39:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":181}' # _entry.id 3U90 # _exptl.entry_id 3U90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U90 _cell.length_a 181.83 _cell.length_b 181.83 _cell.length_c 181.83 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 11 A GLU 11 1_555 F CD CD . A CD 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc2 A OE1 GLU 11 A GLU 11 1_555 F CD CD . A CD 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc3 A SG CYS 48 A CYS 48 1_555 I CD CD . A CD 182 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.708 ? metalc ? metalc4 A SG CYS 48 A CYS 48 1_555 I CD CD . A CD 182 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.863 ? metalc ? metalc5 A OE1 GLU 53 A GLU 53 1_555 G CD CD . A CD 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc6 A OE2 GLU 56 A GLU 56 1_555 E CD CD . A CD 178 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.657 ? metalc ? metalc7 A OE1 GLU 56 A GLU 56 1_555 G CD CD . A CD 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc8 A OE2 GLU 57 A GLU 57 1_555 E CD CD . A CD 178 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.457 ? metalc ? metalc9 A OE1 GLU 60 A GLU 60 1_555 E CD CD . A CD 178 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.533 ? metalc ? metalc10 A OE2 GLU 60 A GLU 60 1_555 E CD CD . A CD 178 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.561 ? metalc ? metalc11 A OE2 GLU 60 A GLU 60 1_555 E CD CD . A CD 178 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.624 ? metalc ? metalc12 A OD2 ASP 80 A ASP 80 1_555 C CD CD . A CD 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc13 A OD1 ASP 80 A ASP 80 1_555 C CD CD . A CD 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc14 A OE1 GLU 88 A GLU 88 1_555 H CD CD . A CD 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc15 A OE2 GLU 88 A GLU 88 1_555 H CD CD . A CD 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc16 A NE2 HIS 114 A HIS 114 1_555 J CD CD . A CD 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc17 A SG CYS 126 A CYS 126 1_555 D CD CD . A CD 177 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.472 ? metalc ? metalc18 A SG CYS 126 A CYS 126 1_555 D CD CD . A CD 177 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.72 ? metalc ? metalc19 A SG CYS 126 A CYS 126 1_555 J CD CD . A CD 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc20 A NE2 HIS 132 A HIS 132 1_555 K CD CD . A CD 184 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.361 ? metalc ? metalc21 C CD CD . A CD 176 1_555 M O HOH . A HOH 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc22 D CD CD . A CD 177 1_555 M O HOH . A HOH 308 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc23 F CD CD . A CD 179 1_555 M O HOH . A HOH 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U90 _atom_sites.fract_transf_matrix[1][1] 0.0055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SDS A 1 175 1 SDS SDS . C 3 CD A 1 176 1 CD CD . D 3 CD A 1 177 2 CD CD . E 3 CD A 1 178 3 CD CD . F 3 CD A 1 179 4 CD CD . G 3 CD A 1 180 5 CD CD . H 3 CD A 1 181 6 CD CD . I 3 CD A 1 182 7 CD CD . J 3 CD A 1 183 8 CD CD . K 3 CD A 1 184 9 CD CD . L 3 CD A 1 185 10 CD CD . M 4 HOH A 1 186 1 HOH HOH . M 4 HOH A 2 187 2 HOH HOH . M 4 HOH A 3 188 3 HOH HOH . M 4 HOH A 4 189 4 HOH HOH . M 4 HOH A 5 190 5 HOH HOH . M 4 HOH A 6 191 6 HOH HOH . M 4 HOH A 7 192 7 HOH HOH . M 4 HOH A 8 193 8 HOH HOH . M 4 HOH A 9 194 9 HOH HOH . M 4 HOH A 10 195 10 HOH HOH . M 4 HOH A 11 196 11 HOH HOH . M 4 HOH A 12 197 12 HOH HOH . M 4 HOH A 13 198 13 HOH HOH . M 4 HOH A 14 199 14 HOH HOH . M 4 HOH A 15 200 15 HOH HOH . M 4 HOH A 16 201 16 HOH HOH . M 4 HOH A 17 202 17 HOH HOH . M 4 HOH A 18 203 18 HOH HOH . M 4 HOH A 19 204 19 HOH HOH . M 4 HOH A 20 205 20 HOH HOH . M 4 HOH A 21 206 21 HOH HOH . M 4 HOH A 22 207 22 HOH HOH . M 4 HOH A 23 208 23 HOH HOH . M 4 HOH A 24 209 24 HOH HOH . M 4 HOH A 25 210 25 HOH HOH . M 4 HOH A 26 211 26 HOH HOH . M 4 HOH A 27 212 27 HOH HOH . M 4 HOH A 28 213 28 HOH HOH . M 4 HOH A 29 214 29 HOH HOH . M 4 HOH A 30 215 30 HOH HOH . M 4 HOH A 31 216 31 HOH HOH . M 4 HOH A 32 217 32 HOH HOH . M 4 HOH A 33 218 33 HOH HOH . M 4 HOH A 34 219 34 HOH HOH . M 4 HOH A 35 220 35 HOH HOH . M 4 HOH A 36 221 36 HOH HOH . M 4 HOH A 37 222 37 HOH HOH . M 4 HOH A 38 223 38 HOH HOH . M 4 HOH A 39 224 39 HOH HOH . M 4 HOH A 40 225 40 HOH HOH . M 4 HOH A 41 226 41 HOH HOH . M 4 HOH A 42 227 42 HOH HOH . M 4 HOH A 43 228 43 HOH HOH . M 4 HOH A 44 229 44 HOH HOH . M 4 HOH A 45 230 45 HOH HOH . M 4 HOH A 46 231 46 HOH HOH . M 4 HOH A 47 232 47 HOH HOH . M 4 HOH A 48 233 48 HOH HOH . M 4 HOH A 49 234 49 HOH HOH . M 4 HOH A 50 235 50 HOH HOH . M 4 HOH A 51 236 51 HOH HOH . M 4 HOH A 52 237 52 HOH HOH . M 4 HOH A 53 238 53 HOH HOH . M 4 HOH A 54 239 54 HOH HOH . M 4 HOH A 55 240 55 HOH HOH . M 4 HOH A 56 241 56 HOH HOH . M 4 HOH A 57 242 57 HOH HOH . M 4 HOH A 58 243 58 HOH HOH . M 4 HOH A 59 244 59 HOH HOH . M 4 HOH A 60 245 60 HOH HOH . M 4 HOH A 61 246 61 HOH HOH . M 4 HOH A 62 247 62 HOH HOH . M 4 HOH A 63 248 63 HOH HOH . M 4 HOH A 64 249 64 HOH HOH . M 4 HOH A 65 250 65 HOH HOH . M 4 HOH A 66 251 66 HOH HOH . M 4 HOH A 67 252 67 HOH HOH . M 4 HOH A 68 253 68 HOH HOH . M 4 HOH A 69 254 69 HOH HOH . M 4 HOH A 70 255 70 HOH HOH . M 4 HOH A 71 256 71 HOH HOH . M 4 HOH A 72 257 72 HOH HOH . M 4 HOH A 73 258 73 HOH HOH . M 4 HOH A 74 259 74 HOH HOH . M 4 HOH A 75 260 75 HOH HOH . M 4 HOH A 76 261 76 HOH HOH . M 4 HOH A 77 262 77 HOH HOH . M 4 HOH A 78 263 78 HOH HOH . M 4 HOH A 79 264 79 HOH HOH . M 4 HOH A 80 265 80 HOH HOH . M 4 HOH A 81 266 81 HOH HOH . M 4 HOH A 82 267 82 HOH HOH . M 4 HOH A 83 268 83 HOH HOH . M 4 HOH A 84 269 84 HOH HOH . M 4 HOH A 85 270 85 HOH HOH . M 4 HOH A 86 271 86 HOH HOH . M 4 HOH A 87 272 87 HOH HOH . M 4 HOH A 88 273 88 HOH HOH . M 4 HOH A 89 274 89 HOH HOH . M 4 HOH A 90 275 90 HOH HOH . M 4 HOH A 91 276 91 HOH HOH . M 4 HOH A 92 277 92 HOH HOH . M 4 HOH A 93 278 93 HOH HOH . M 4 HOH A 94 279 94 HOH HOH . M 4 HOH A 95 280 95 HOH HOH . M 4 HOH A 96 281 96 HOH HOH . M 4 HOH A 97 282 97 HOH HOH . M 4 HOH A 98 283 98 HOH HOH . M 4 HOH A 99 284 99 HOH HOH . M 4 HOH A 100 285 100 HOH HOH . M 4 HOH A 101 286 101 HOH HOH . M 4 HOH A 102 287 102 HOH HOH . M 4 HOH A 103 288 103 HOH HOH . M 4 HOH A 104 289 104 HOH HOH . M 4 HOH A 105 290 105 HOH HOH . M 4 HOH A 106 291 106 HOH HOH . M 4 HOH A 107 292 107 HOH HOH . M 4 HOH A 108 293 108 HOH HOH . M 4 HOH A 109 294 109 HOH HOH . M 4 HOH A 110 295 110 HOH HOH . M 4 HOH A 111 296 111 HOH HOH . M 4 HOH A 112 297 112 HOH HOH . M 4 HOH A 113 298 113 HOH HOH . M 4 HOH A 114 299 114 HOH HOH . M 4 HOH A 115 300 115 HOH HOH . M 4 HOH A 116 301 116 HOH HOH . M 4 HOH A 117 302 117 HOH HOH . M 4 HOH A 118 303 118 HOH HOH . M 4 HOH A 119 304 119 HOH HOH . M 4 HOH A 120 305 120 HOH HOH . M 4 HOH A 121 306 121 HOH HOH . M 4 HOH A 122 307 122 HOH HOH . M 4 HOH A 123 308 123 HOH HOH . M 4 HOH A 124 309 124 HOH HOH . M 4 HOH A 125 310 125 HOH HOH . M 4 HOH A 126 311 126 HOH HOH . M 4 HOH A 127 312 127 HOH HOH . M 4 HOH A 128 313 128 HOH HOH . M 4 HOH A 129 314 129 HOH HOH . M 4 HOH A 130 315 130 HOH HOH . M 4 HOH A 131 316 131 HOH HOH . M 4 HOH A 132 317 132 HOH HOH . M 4 HOH A 133 318 133 HOH HOH . M 4 HOH A 134 319 134 HOH HOH . M 4 HOH A 135 320 135 HOH HOH . M 4 HOH A 136 321 136 HOH HOH . M 4 HOH A 137 322 137 HOH HOH . M 4 HOH A 138 323 138 HOH HOH . M 4 HOH A 139 324 139 HOH HOH . M 4 HOH A 140 325 140 HOH HOH . M 4 HOH A 141 326 141 HOH HOH . M 4 HOH A 142 327 142 HOH HOH . M 4 HOH A 143 328 143 HOH HOH . M 4 HOH A 144 329 144 HOH HOH . M 4 HOH A 145 330 145 HOH HOH . M 4 HOH A 146 331 146 HOH HOH . M 4 HOH A 147 332 147 HOH HOH . M 4 HOH A 148 333 148 HOH HOH . M 4 HOH A 149 334 149 HOH HOH . M 4 HOH A 150 335 150 HOH HOH . M 4 HOH A 151 336 151 HOH HOH . M 4 HOH A 152 337 152 HOH HOH . M 4 HOH A 153 338 153 HOH HOH . M 4 HOH A 154 339 154 HOH HOH . M 4 HOH A 155 340 155 HOH HOH . M 4 HOH A 156 341 156 HOH HOH . M 4 HOH A 157 342 157 HOH HOH . M 4 HOH A 158 343 158 HOH HOH . M 4 HOH A 159 344 159 HOH HOH . M 4 HOH A 160 345 160 HOH HOH . M 4 HOH A 161 346 161 HOH HOH . M 4 HOH A 162 347 162 HOH HOH . M 4 HOH A 163 348 163 HOH HOH . M 4 HOH A 164 349 164 HOH HOH . M 4 HOH A 165 350 165 HOH HOH . M 4 HOH A 166 351 166 HOH HOH . M 4 HOH A 167 352 167 HOH HOH . M 4 HOH A 168 353 168 HOH HOH . M 4 HOH A 169 354 169 HOH HOH . M 4 HOH A 170 355 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.067 _atom_site.Cartn_y -9.01 _atom_site.Cartn_z 55.92 _atom_site.occupancy 0.42 _atom_site.B_iso_or_equiv 36.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 181 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #