data_3U91 # _model_server_result.job_id Y1o-DWWMrbZfFGbBgyfNWA _model_server_result.datetime_utc '2025-01-10 12:20:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":34}' # _entry.id 3U91 # _exptl.entry_id 3U91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 597.822 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U91 _cell.length_a 45.308 _cell.length_b 45.308 _cell.length_c 42.16 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -22.654 39.237879 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -45.308 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H63 N O10' _chem_comp.formula_weight 597.822 _chem_comp.id JEF _chem_comp.mon_nstd_flag . _chem_comp.name "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JEFFAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C38 O12 JEF sing 144 n n C38 H381 JEF sing 145 n n C38 H382 JEF sing 146 n n C38 H383 JEF sing 147 n n O12 C37 JEF sing 148 n n C37 C36 JEF sing 149 n n C37 H371 JEF sing 150 n n C37 H372 JEF sing 151 n n C36 O11 JEF sing 152 n n C36 H361 JEF sing 153 n n C36 H362 JEF sing 154 n n C33 C34 JEF sing 155 n n C33 C32 JEF sing 156 n n C33 H33 JEF sing 157 n n C34 H341 JEF sing 158 n n C34 H342 JEF sing 159 n n C34 H343 JEF sing 160 n n C32 O10 JEF sing 161 n n C32 H321 JEF sing 162 n n C32 H322 JEF sing 163 n n O10 C19 JEF sing 164 n n C19 C40 JEF sing 165 n n C19 C20 JEF sing 166 n n C19 H19 JEF sing 167 n n C40 H401 JEF sing 168 n n C40 H402 JEF sing 169 n n C40 H403 JEF sing 170 n n C20 O JEF sing 171 n n C20 H201 JEF sing 172 n n C20 H202 JEF sing 173 n n O C JEF sing 174 n n C C18 JEF sing 175 n n C C17 JEF sing 176 n n C H JEF sing 177 n n C18 H181 JEF sing 178 n n C18 H182 JEF sing 179 n n C18 H183 JEF sing 180 n n C17 OH JEF sing 181 n n C17 H171 JEF sing 182 n n C17 H172 JEF sing 183 n n OH C2 JEF sing 184 n n C2 C1 JEF sing 185 n n C2 C3 JEF sing 186 n n C2 H2 JEF sing 187 n n C1 H11A JEF sing 188 n n C1 H12 JEF sing 189 n n C1 H13A JEF sing 190 n n C3 O2 JEF sing 191 n n C3 H31 JEF sing 192 n n C3 H32 JEF sing 193 n n O2 C5 JEF sing 194 n n C5 C6 JEF sing 195 n n C5 C4 JEF sing 196 n n C5 H5 JEF sing 197 n n C6 H61 JEF sing 198 n n C6 H62 JEF sing 199 n n C6 H63 JEF sing 200 n n C4 O3 JEF sing 201 n n C4 H41 JEF sing 202 n n C4 H42 JEF sing 203 n n O3 C7 JEF sing 204 n n C7 C9 JEF sing 205 n n C7 C8 JEF sing 206 n n C7 H7 JEF sing 207 n n C9 H91 JEF sing 208 n n C9 H92 JEF sing 209 n n C9 H93 JEF sing 210 n n C8 O4 JEF sing 211 n n C8 H81 JEF sing 212 n n C8 H82 JEF sing 213 n n O4 C11 JEF sing 214 n n C11 C12 JEF sing 215 n n C11 C10 JEF sing 216 n n C11 H11 JEF sing 217 n n C12 H121 JEF sing 218 n n C12 H122 JEF sing 219 n n C12 H123 JEF sing 220 n n C10 O5 JEF sing 221 n n C10 H101 JEF sing 222 n n C10 H102 JEF sing 223 n n O5 C13 JEF sing 224 n n C13 C15 JEF sing 225 n n C13 C14 JEF sing 226 n n C13 H13 JEF sing 227 n n C15 H151 JEF sing 228 n n C15 H152 JEF sing 229 n n C15 H153 JEF sing 230 n n C14 O6 JEF sing 231 n n C14 H141 JEF sing 232 n n C14 H142 JEF sing 233 n n O6 C16 JEF sing 234 n n C16 C30 JEF sing 235 n n C16 H161 JEF sing 236 n n C16 H162 JEF sing 237 n n C30 C31 JEF sing 238 n n C30 N1 JEF sing 239 n n C30 H30 JEF sing 240 n n C31 H311 JEF sing 241 n n C31 H312 JEF sing 242 n n C31 H313 JEF sing 243 n n N1 HN11 JEF sing 244 n n N1 HN12 JEF sing 245 n n C33 O11 JEF sing 246 n n # _atom_sites.entry_id 3U91 _atom_sites.fract_transf_matrix[1][1] 0.022071 _atom_sites.fract_transf_matrix[1][2] 0.012743 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JEF A 1 34 1 JEF JEF . C 3 HOH A 1 35 35 HOH WAT . C 3 HOH A 2 36 36 HOH WAT . C 3 HOH A 3 37 37 HOH WAT . C 3 HOH A 4 38 38 HOH WAT . C 3 HOH A 5 39 39 HOH WAT . C 3 HOH A 6 40 40 HOH WAT . C 3 HOH A 7 41 41 HOH WAT . C 3 HOH A 8 42 42 HOH WAT . C 3 HOH A 9 43 43 HOH WAT . C 3 HOH A 10 44 44 HOH WAT . C 3 HOH A 11 45 45 HOH WAT . C 3 HOH A 12 46 46 HOH WAT . C 3 HOH A 13 47 47 HOH WAT . C 3 HOH A 14 48 48 HOH WAT . C 3 HOH A 15 49 49 HOH WAT . C 3 HOH A 16 50 2 HOH WAT . C 3 HOH A 17 51 3 HOH WAT . C 3 HOH A 18 52 4 HOH WAT . C 3 HOH A 19 53 5 HOH WAT . C 3 HOH A 20 54 6 HOH WAT . C 3 HOH A 21 55 7 HOH WAT . C 3 HOH A 22 56 8 HOH WAT . C 3 HOH A 23 57 9 HOH WAT . C 3 HOH A 24 58 10 HOH WAT . C 3 HOH A 25 59 11 HOH WAT . C 3 HOH A 26 60 12 HOH WAT . C 3 HOH A 27 61 13 HOH WAT . C 3 HOH A 28 62 14 HOH WAT . C 3 HOH A 29 63 15 HOH WAT . C 3 HOH A 30 64 16 HOH WAT . C 3 HOH A 31 65 17 HOH WAT . C 3 HOH A 32 66 18 HOH WAT . C 3 HOH A 33 67 19 HOH WAT . C 3 HOH A 34 68 20 HOH WAT . C 3 HOH A 35 69 21 HOH WAT . C 3 HOH A 36 70 22 HOH WAT . C 3 HOH A 37 71 23 HOH WAT . C 3 HOH A 38 72 24 HOH WAT . C 3 HOH A 39 73 25 HOH WAT . C 3 HOH A 40 74 26 HOH WAT . C 3 HOH A 41 75 27 HOH WAT . C 3 HOH A 42 76 28 HOH WAT . C 3 HOH A 43 77 29 HOH WAT . C 3 HOH A 44 78 30 HOH WAT . C 3 HOH A 45 79 31 HOH WAT . C 3 HOH A 46 80 32 HOH WAT . C 3 HOH A 47 81 33 HOH WAT . C 3 HOH A 48 82 34 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 JEF . . . B 2 -12.683 8.775 4.756 1 46.5 ? C20 JEF 34 A 1 HETATM 2 O O JEF . . . B 2 -13.899 8.215 5.246 1 46.22 ? O JEF 34 A 1 HETATM 3 C C JEF . . . B 2 -15.056 8.938 4.83 1 44.96 ? C JEF 34 A 1 HETATM 4 C C18 JEF . . . B 2 -15.745 9.486 6.066 1 44.48 ? C18 JEF 34 A 1 HETATM 5 C C17 JEF . . . B 2 -15.987 8.013 4.064 1 44.32 ? C17 JEF 34 A 1 HETATM 6 O OH JEF . . . B 2 -16.865 8.74 3.203 1 44.19 ? OH JEF 34 A 1 HETATM 7 C C2 JEF . . . B 2 -16.993 8.23 1.86 1 43.52 ? C2 JEF 34 A 1 HETATM 8 C C1 JEF . . . B 2 -18.399 7.691 1.602 1 42.47 ? C1 JEF 34 A 1 HETATM 9 C C3 JEF . . . B 2 -15.956 7.166 1.529 1 43.85 ? C3 JEF 34 A 1 HETATM 10 O O2 JEF . . . B 2 -15.714 7.16 0.125 1 44.39 ? O2 JEF 34 A 1 HETATM 11 C C5 JEF . . . B 2 -14.32 7.216 -0.18 1 44.02 ? C5 JEF 34 A 1 HETATM 12 C C6 JEF . . . B 2 -13.862 5.859 -0.706 1 44.28 ? C6 JEF 34 A 1 HETATM 13 C C4 JEF . . . B 2 -14.079 8.3 -1.218 1 44.11 ? C4 JEF 34 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #