data_3U9C
#
_model_server_result.job_id            8_X8qiQ7IPWIwxQKzjcirQ 
_model_server_result.datetime_utc      '2024-11-23 23:57:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u9c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":407}' 
#
_entry.id    3U9C 
#
_exptl.entry_id    3U9C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U9C 
_cell.length_a            127.777 
_cell.length_b            127.777 
_cell.length_c            125.766 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U9C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,R 1 1 
B,K,L,M,N,O,P,Q,S 2 1 
A,C,D,E,F,G,H,I,J,R 3 1 
B,K,L,M,N,O,P,Q,S 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 125.766 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 P N N 
? 4 Q N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 154 n n 
C1 C2 GOL sing 155 n n 
C1 H11 GOL sing 156 n n 
C1 H12 GOL sing 157 n n 
O1 HO1 GOL sing 158 n n 
C2 O2 GOL sing 159 n n 
C2 C3 GOL sing 160 n n 
C2 H2 GOL sing 161 n n 
O2 HO2 GOL sing 162 n n 
C3 O3 GOL sing 163 n n 
C3 H31 GOL sing 164 n n 
C3 H32 GOL sing 165 n n 
O3 HO3 GOL sing 166 n n 
#
_atom_sites.entry_id                     3U9C 
_atom_sites.fract_transf_matrix[1][1]    0.007826 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007826 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007952 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 401 336 SO4 SO4 . 
D 2 SO4 A 1 402 337 SO4 SO4 . 
E 2 SO4 A 1 403 338 SO4 SO4 . 
F 3 04G A 1 404 339 04G 04G . 
G 4 GOL A 1 405 340 GOL GOL . 
H 4 GOL A 1 406 341 GOL GOL . 
I 4 GOL A 1 407 342 GOL GOL . 
J 5 CL A 1 408 343 CL CL . 
K 2 SO4 B 1 401 336 SO4 SO4 . 
L 2 SO4 B 1 402 337 SO4 SO4 . 
M 2 SO4 B 1 403 338 SO4 SO4 . 
N 2 SO4 B 1 404 339 SO4 SO4 . 
O 3 04G B 1 405 340 04G 04G . 
P 4 GOL B 1 406 341 GOL GOL . 
Q 4 GOL B 1 407 342 GOL GOL . 
R 6 HOH A 1 501 26 HOH HOH . 
R 6 HOH A 2 502 27 HOH HOH . 
R 6 HOH A 3 503 28 HOH HOH . 
R 6 HOH A 4 504 29 HOH HOH . 
R 6 HOH A 5 505 30 HOH HOH . 
R 6 HOH A 6 506 31 HOH HOH . 
R 6 HOH A 7 507 32 HOH HOH . 
R 6 HOH A 8 508 33 HOH HOH . 
R 6 HOH A 9 509 34 HOH HOH . 
R 6 HOH A 10 510 35 HOH HOH . 
R 6 HOH A 11 511 36 HOH HOH . 
R 6 HOH A 12 512 37 HOH HOH . 
R 6 HOH A 13 513 38 HOH HOH . 
R 6 HOH A 14 514 39 HOH HOH . 
R 6 HOH A 15 515 40 HOH HOH . 
R 6 HOH A 16 516 41 HOH HOH . 
R 6 HOH A 17 517 43 HOH HOH . 
R 6 HOH A 18 518 44 HOH HOH . 
R 6 HOH A 19 519 45 HOH HOH . 
R 6 HOH A 20 520 46 HOH HOH . 
R 6 HOH A 21 521 47 HOH HOH . 
R 6 HOH A 22 522 48 HOH HOH . 
R 6 HOH A 23 523 49 HOH HOH . 
R 6 HOH A 24 524 50 HOH HOH . 
R 6 HOH A 25 525 51 HOH HOH . 
R 6 HOH A 26 526 52 HOH HOH . 
R 6 HOH A 27 527 54 HOH HOH . 
R 6 HOH A 28 528 55 HOH HOH . 
R 6 HOH A 29 529 56 HOH HOH . 
R 6 HOH A 30 530 58 HOH HOH . 
S 6 HOH B 1 501 1 HOH HOH . 
S 6 HOH B 2 502 2 HOH HOH . 
S 6 HOH B 3 503 3 HOH HOH . 
S 6 HOH B 4 504 4 HOH HOH . 
S 6 HOH B 5 505 5 HOH HOH . 
S 6 HOH B 6 506 6 HOH HOH . 
S 6 HOH B 7 507 7 HOH HOH . 
S 6 HOH B 8 508 8 HOH HOH . 
S 6 HOH B 9 509 9 HOH HOH . 
S 6 HOH B 10 510 10 HOH HOH . 
S 6 HOH B 11 511 11 HOH HOH . 
S 6 HOH B 12 512 12 HOH HOH . 
S 6 HOH B 13 513 13 HOH HOH . 
S 6 HOH B 14 514 14 HOH HOH . 
S 6 HOH B 15 515 15 HOH HOH . 
S 6 HOH B 16 516 16 HOH HOH . 
S 6 HOH B 17 517 17 HOH HOH . 
S 6 HOH B 18 518 18 HOH HOH . 
S 6 HOH B 19 519 19 HOH HOH . 
S 6 HOH B 20 520 20 HOH HOH . 
S 6 HOH B 21 521 21 HOH HOH . 
S 6 HOH B 22 522 22 HOH HOH . 
S 6 HOH B 23 523 23 HOH HOH . 
S 6 HOH B 24 524 24 HOH HOH . 
S 6 HOH B 25 525 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 28.919 23.16 46.416 0.85 51.3 ? C1 GOL 407 A 1 
HETATM 2 O O1 GOL . . . I 4 28.44 21.964 46.992 0.85 52.71 ? O1 GOL 407 A 1 
HETATM 3 C C2 GOL . . . I 4 30.149 23.635 47.181 0.85 56.94 ? C2 GOL 407 A 1 
HETATM 4 O O2 GOL . . . I 4 31.124 24.082 46.266 0.85 53.09 ? O2 GOL 407 A 1 
HETATM 5 C C3 GOL . . . I 4 29.763 24.776 48.117 0.85 64.32 ? C3 GOL 407 A 1 
HETATM 6 O O3 GOL . . . I 4 30.896 25.199 48.844 0.85 62.52 ? O3 GOL 407 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#