data_3U9E
#
_model_server_result.job_id            YhkazeyLf8h9qfotoRdMQw 
_model_server_result.datetime_utc      '2024-12-22 05:59:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u9e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":297}' 
#
_entry.id    3U9E 
#
_exptl.entry_id    3U9E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.08 
_cell.angle_gamma         90 
_cell.entry_id            3U9E 
_cell.length_a            43.739 
_cell.length_b            76.727 
_cell.length_c            80.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U9E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 100 A LEU 97 1_555 A N MSE 101 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C MSE 101 A MSE 98 1_555 A N HIS 102 A HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C ALA 138 A ALA 135 1_555 A N MSE 139 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C MSE 139 A MSE 136 1_555 A N ASN 140 A ASN 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 A C LYS 181 A LYS 178 1_555 A N MSE 182 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 A C MSE 182 A MSE 179 1_555 A N PRO 183 A PRO 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale7 B C MSE 4 B MSE 1 1_555 B N THR 5 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 B C LEU 100 B LEU 97 1_555 B N MSE 101 B MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 B C MSE 101 B MSE 98 1_555 B N HIS 102 B HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale10 B C ALA 138 B ALA 135 1_555 B N MSE 139 B MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale11 B C MSE 139 B MSE 136 1_555 B N ASN 140 B ASN 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale12 B C LYS 181 B LYS 178 1_555 B N MSE 182 B MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale13 B C MSE 182 B MSE 179 1_555 B N PRO 183 B PRO 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 215 n n 
C1 C2 GOL sing 216 n n 
C1 H11 GOL sing 217 n n 
C1 H12 GOL sing 218 n n 
O1 HO1 GOL sing 219 n n 
C2 O2 GOL sing 220 n n 
C2 C3 GOL sing 221 n n 
C2 H2 GOL sing 222 n n 
O2 HO2 GOL sing 223 n n 
C3 O3 GOL sing 224 n n 
C3 H31 GOL sing 225 n n 
C3 H32 GOL sing 226 n n 
O3 HO3 GOL sing 227 n n 
#
_atom_sites.entry_id                     3U9E 
_atom_sites.fract_transf_matrix[1][1]    0.022863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005733 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013033 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 COA A 1 289 1 COA COA . 
D 2 COA A 1 290 2 COA COA . 
E 3 CL A 1 291 1 CL CL . 
F 4 GOL A 1 292 5 GOL GOL . 
G 4 GOL A 1 293 8 GOL GOL . 
H 4 GOL A 1 294 9 GOL GOL . 
I 4 GOL A 1 295 10 GOL GOL . 
J 4 GOL A 1 296 12 GOL GOL . 
K 4 GOL A 1 297 13 GOL GOL . 
L 4 GOL A 1 298 14 GOL GOL . 
M 2 COA B 1 289 3 COA COA . 
N 2 COA B 1 290 4 COA COA . 
O 5 ARG B 1 291 1 ARG ARG . 
P 4 GOL B 1 292 1 GOL GOL . 
Q 4 GOL B 1 293 2 GOL GOL . 
R 4 GOL B 1 294 3 GOL GOL . 
S 4 GOL B 1 295 4 GOL GOL . 
T 4 GOL B 1 296 6 GOL GOL . 
U 4 GOL B 1 297 7 GOL GOL . 
V 4 GOL B 1 298 11 GOL GOL . 
W 6 HOH A 1 299 5 HOH HOH . 
W 6 HOH A 2 300 6 HOH HOH . 
W 6 HOH A 3 301 8 HOH HOH . 
W 6 HOH A 4 302 9 HOH HOH . 
W 6 HOH A 5 303 10 HOH HOH . 
W 6 HOH A 6 304 14 HOH HOH . 
W 6 HOH A 7 305 15 HOH HOH . 
W 6 HOH A 8 306 16 HOH HOH . 
W 6 HOH A 9 307 17 HOH HOH . 
W 6 HOH A 10 308 18 HOH HOH . 
W 6 HOH A 11 309 21 HOH HOH . 
W 6 HOH A 12 310 22 HOH HOH . 
W 6 HOH A 13 311 23 HOH HOH . 
W 6 HOH A 14 312 24 HOH HOH . 
W 6 HOH A 15 313 25 HOH HOH . 
W 6 HOH A 16 314 26 HOH HOH . 
W 6 HOH A 17 315 31 HOH HOH . 
W 6 HOH A 18 316 33 HOH HOH . 
W 6 HOH A 19 317 34 HOH HOH . 
W 6 HOH A 20 318 37 HOH HOH . 
W 6 HOH A 21 319 38 HOH HOH . 
W 6 HOH A 22 320 43 HOH HOH . 
W 6 HOH A 23 321 47 HOH HOH . 
W 6 HOH A 24 322 49 HOH HOH . 
W 6 HOH A 25 323 50 HOH HOH . 
W 6 HOH A 26 324 51 HOH HOH . 
W 6 HOH A 27 325 52 HOH HOH . 
W 6 HOH A 28 326 55 HOH HOH . 
W 6 HOH A 29 327 56 HOH HOH . 
W 6 HOH A 30 328 57 HOH HOH . 
W 6 HOH A 31 329 58 HOH HOH . 
W 6 HOH A 32 330 60 HOH HOH . 
W 6 HOH A 33 331 66 HOH HOH . 
W 6 HOH A 34 332 68 HOH HOH . 
W 6 HOH A 35 333 69 HOH HOH . 
W 6 HOH A 36 334 70 HOH HOH . 
W 6 HOH A 37 335 75 HOH HOH . 
W 6 HOH A 38 336 77 HOH HOH . 
W 6 HOH A 39 337 79 HOH HOH . 
W 6 HOH A 40 338 80 HOH HOH . 
W 6 HOH A 41 339 83 HOH HOH . 
W 6 HOH A 42 340 84 HOH HOH . 
W 6 HOH A 43 341 85 HOH HOH . 
W 6 HOH A 44 342 87 HOH HOH . 
W 6 HOH A 45 343 88 HOH HOH . 
W 6 HOH A 46 344 92 HOH HOH . 
W 6 HOH A 47 345 94 HOH HOH . 
W 6 HOH A 48 346 95 HOH HOH . 
W 6 HOH A 49 347 99 HOH HOH . 
W 6 HOH A 50 348 102 HOH HOH . 
W 6 HOH A 51 349 104 HOH HOH . 
W 6 HOH A 52 350 107 HOH HOH . 
W 6 HOH A 53 351 109 HOH HOH . 
W 6 HOH A 54 352 110 HOH HOH . 
W 6 HOH A 55 353 113 HOH HOH . 
W 6 HOH A 56 354 114 HOH HOH . 
W 6 HOH A 57 355 115 HOH HOH . 
W 6 HOH A 58 356 116 HOH HOH . 
W 6 HOH A 59 357 117 HOH HOH . 
W 6 HOH A 60 358 118 HOH HOH . 
W 6 HOH A 61 359 119 HOH HOH . 
W 6 HOH A 62 360 120 HOH HOH . 
W 6 HOH A 63 361 121 HOH HOH . 
W 6 HOH A 64 362 123 HOH HOH . 
W 6 HOH A 65 363 124 HOH HOH . 
W 6 HOH A 66 364 126 HOH HOH . 
W 6 HOH A 67 365 128 HOH HOH . 
W 6 HOH A 68 366 129 HOH HOH . 
W 6 HOH A 69 367 131 HOH HOH . 
W 6 HOH A 70 368 136 HOH HOH . 
W 6 HOH A 71 369 137 HOH HOH . 
W 6 HOH A 72 370 140 HOH HOH . 
W 6 HOH A 73 371 143 HOH HOH . 
W 6 HOH A 74 372 144 HOH HOH . 
W 6 HOH A 75 373 148 HOH HOH . 
W 6 HOH A 76 374 149 HOH HOH . 
W 6 HOH A 77 375 152 HOH HOH . 
W 6 HOH A 78 376 153 HOH HOH . 
W 6 HOH A 79 377 154 HOH HOH . 
W 6 HOH A 80 378 155 HOH HOH . 
W 6 HOH A 81 379 157 HOH HOH . 
X 6 HOH B 1 299 1 HOH HOH . 
X 6 HOH B 2 300 2 HOH HOH . 
X 6 HOH B 3 301 3 HOH HOH . 
X 6 HOH B 4 302 4 HOH HOH . 
X 6 HOH B 5 303 7 HOH HOH . 
X 6 HOH B 6 304 11 HOH HOH . 
X 6 HOH B 7 305 12 HOH HOH . 
X 6 HOH B 8 306 13 HOH HOH . 
X 6 HOH B 9 307 19 HOH HOH . 
X 6 HOH B 10 308 20 HOH HOH . 
X 6 HOH B 11 309 27 HOH HOH . 
X 6 HOH B 12 310 28 HOH HOH . 
X 6 HOH B 13 311 29 HOH HOH . 
X 6 HOH B 14 312 30 HOH HOH . 
X 6 HOH B 15 313 32 HOH HOH . 
X 6 HOH B 16 314 35 HOH HOH . 
X 6 HOH B 17 315 36 HOH HOH . 
X 6 HOH B 18 316 39 HOH HOH . 
X 6 HOH B 19 317 40 HOH HOH . 
X 6 HOH B 20 318 41 HOH HOH . 
X 6 HOH B 21 319 42 HOH HOH . 
X 6 HOH B 22 320 44 HOH HOH . 
X 6 HOH B 23 321 45 HOH HOH . 
X 6 HOH B 24 322 46 HOH HOH . 
X 6 HOH B 25 323 48 HOH HOH . 
X 6 HOH B 26 324 53 HOH HOH . 
X 6 HOH B 27 325 54 HOH HOH . 
X 6 HOH B 28 326 59 HOH HOH . 
X 6 HOH B 29 327 61 HOH HOH . 
X 6 HOH B 30 328 62 HOH HOH . 
X 6 HOH B 31 329 63 HOH HOH . 
X 6 HOH B 32 330 64 HOH HOH . 
X 6 HOH B 33 331 65 HOH HOH . 
X 6 HOH B 34 332 67 HOH HOH . 
X 6 HOH B 35 333 71 HOH HOH . 
X 6 HOH B 36 334 72 HOH HOH . 
X 6 HOH B 37 335 73 HOH HOH . 
X 6 HOH B 38 336 74 HOH HOH . 
X 6 HOH B 39 337 76 HOH HOH . 
X 6 HOH B 40 338 78 HOH HOH . 
X 6 HOH B 41 339 81 HOH HOH . 
X 6 HOH B 42 340 82 HOH HOH . 
X 6 HOH B 43 341 86 HOH HOH . 
X 6 HOH B 44 342 89 HOH HOH . 
X 6 HOH B 45 343 90 HOH HOH . 
X 6 HOH B 46 344 91 HOH HOH . 
X 6 HOH B 47 345 93 HOH HOH . 
X 6 HOH B 48 346 96 HOH HOH . 
X 6 HOH B 49 347 97 HOH HOH . 
X 6 HOH B 50 348 98 HOH HOH . 
X 6 HOH B 51 349 100 HOH HOH . 
X 6 HOH B 52 350 101 HOH HOH . 
X 6 HOH B 53 351 103 HOH HOH . 
X 6 HOH B 54 352 105 HOH HOH . 
X 6 HOH B 55 353 106 HOH HOH . 
X 6 HOH B 56 354 108 HOH HOH . 
X 6 HOH B 57 355 111 HOH HOH . 
X 6 HOH B 58 356 112 HOH HOH . 
X 6 HOH B 59 357 122 HOH HOH . 
X 6 HOH B 60 358 125 HOH HOH . 
X 6 HOH B 61 359 127 HOH HOH . 
X 6 HOH B 62 360 130 HOH HOH . 
X 6 HOH B 63 361 132 HOH HOH . 
X 6 HOH B 64 362 133 HOH HOH . 
X 6 HOH B 65 363 134 HOH HOH . 
X 6 HOH B 66 364 135 HOH HOH . 
X 6 HOH B 67 365 138 HOH HOH . 
X 6 HOH B 68 366 139 HOH HOH . 
X 6 HOH B 69 367 141 HOH HOH . 
X 6 HOH B 70 368 142 HOH HOH . 
X 6 HOH B 71 369 145 HOH HOH . 
X 6 HOH B 72 370 146 HOH HOH . 
X 6 HOH B 73 371 147 HOH HOH . 
X 6 HOH B 74 372 150 HOH HOH . 
X 6 HOH B 75 373 151 HOH HOH . 
X 6 HOH B 76 374 156 HOH HOH . 
X 6 HOH B 77 375 158 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . U 4 6.768 -13.605 7.043 1 59.01 ? C1 GOL 297 B 1 
HETATM 2 O O1 GOL . . . U 4 6.567 -14.955 7.404 1 55.03 ? O1 GOL 297 B 1 
HETATM 3 C C2 GOL . . . U 4 8.2 -13.359 6.564 1 66.33 ? C2 GOL 297 B 1 
HETATM 4 O O2 GOL . . . U 4 8.184 -12.572 5.389 1 66.28 ? O2 GOL 297 B 1 
HETATM 5 C C3 GOL . . . U 4 8.997 -12.643 7.655 1 71.08 ? C3 GOL 297 B 1 
HETATM 6 O O3 GOL . . . U 4 10.035 -11.873 7.079 1 75.1 ? O3 GOL 297 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#