data_3U9S # _model_server_result.job_id 71LyIyzGOi5VUZrL9xeIJg _model_server_result.datetime_utc '2025-07-05 10:38:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":591}' # _entry.id 3U9S # _exptl.entry_id 3U9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.74 _cell.angle_gamma 90 _cell.entry_id 3U9S _cell.length_a 131.51 _cell.length_b 255.34 _cell.length_c 152.67 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 617 A LYS 681 1_555 M C11 BTI . A BTI 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 I NZ LYS 617 I LYS 681 1_555 R C11 BTI . I BTI 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 102 n y N1A C6A COA doub 103 n y C2A N3A COA doub 104 n y C2A H2A COA sing 105 n n N3A C4A COA sing 106 n y C4A C5A COA doub 107 n y C4A N9A COA sing 108 n y C5A C6A COA sing 109 n y C5A N7A COA sing 110 n y C6A N6A COA sing 111 n n N6A H61A COA sing 112 n n N6A H62A COA sing 113 n n N7A C8A COA doub 114 n y C8A N9A COA sing 115 n y C8A H8A COA sing 116 n n N9A C1B COA sing 117 n n C1B C2B COA sing 118 n n C1B O4B COA sing 119 n n C1B H1B COA sing 120 n n C2B O2B COA sing 121 n n C2B C3B COA sing 122 n n C2B H2B COA sing 123 n n O2B HO2A COA sing 124 n n C3B O3B COA sing 125 n n C3B C4B COA sing 126 n n C3B H3B COA sing 127 n n O3B P3B COA sing 128 n n P3B O7A COA doub 129 n n P3B O8A COA sing 130 n n P3B O9A COA sing 131 n n O8A HOA8 COA sing 132 n n O9A HOA9 COA sing 133 n n C4B O4B COA sing 134 n n C4B C5B COA sing 135 n n C4B H4B COA sing 136 n n C5B O5B COA sing 137 n n C5B H51A COA sing 138 n n C5B H52A COA sing 139 n n O5B P1A COA sing 140 n n P1A O1A COA doub 141 n n P1A O2A COA sing 142 n n P1A O3A COA sing 143 n n O2A HOA2 COA sing 144 n n O3A P2A COA sing 145 n n P2A O4A COA doub 146 n n P2A O5A COA sing 147 n n P2A O6A COA sing 148 n n O5A HOA5 COA sing 149 n n O6A CCP COA sing 150 n n CBP CCP COA sing 151 n n CBP CDP COA sing 152 n n CBP CEP COA sing 153 n n CBP CAP COA sing 154 n n CCP H121 COA sing 155 n n CCP H122 COA sing 156 n n CDP H131 COA sing 157 n n CDP H132 COA sing 158 n n CDP H133 COA sing 159 n n CEP H141 COA sing 160 n n CEP H142 COA sing 161 n n CEP H143 COA sing 162 n n CAP OAP COA sing 163 n n CAP C9P COA sing 164 n n CAP H10 COA sing 165 n n OAP HO1 COA sing 166 n n C9P O9P COA doub 167 n n C9P N8P COA sing 168 n n N8P C7P COA sing 169 n n N8P HN8 COA sing 170 n n C7P C6P COA sing 171 n n C7P H71 COA sing 172 n n C7P H72 COA sing 173 n n C6P C5P COA sing 174 n n C6P H61 COA sing 175 n n C6P H62 COA sing 176 n n C5P O5P COA doub 177 n n C5P N4P COA sing 178 n n N4P C3P COA sing 179 n n N4P HN4 COA sing 180 n n C3P C2P COA sing 181 n n C3P H31 COA sing 182 n n C3P H32 COA sing 183 n n C2P S1P COA sing 184 n n C2P H21 COA sing 185 n n C2P H22 COA sing 186 n n S1P HS1 COA sing 187 n n # _atom_sites.entry_id 3U9S _atom_sites.fract_transf_matrix[1][1] 0.007604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 BTI A 1 801 801 BTI BTI . N 4 COA B 1 591 591 COA COA . O 4 COA D 1 591 591 COA COA . P 4 COA F 1 591 591 COA COA . Q 4 COA H 1 591 591 COA COA . R 3 BTI I 1 801 801 BTI BTI . S 4 COA J 1 591 591 COA COA . T 4 COA L 1 591 591 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . N 4 73.799 -0.195 71.369 1 126.03 ? N1A COA 591 B 1 HETATM 2 C C2A COA . . . N 4 73.65 0.266 72.599 1 125.89 ? C2A COA 591 B 1 HETATM 3 N N3A COA . . . N 4 74.145 1.434 72.967 1 126.35 ? N3A COA 591 B 1 HETATM 4 C C4A COA . . . N 4 74.824 2.19 72.094 1 129.06 ? C4A COA 591 B 1 HETATM 5 C C5A COA . . . N 4 75.007 1.736 70.796 1 128.88 ? C5A COA 591 B 1 HETATM 6 C C6A COA . . . N 4 74.463 0.509 70.441 1 127.54 ? C6A COA 591 B 1 HETATM 7 N N6A COA . . . N 4 74.542 0.074 69.187 1 126.71 ? N6A COA 591 B 1 HETATM 8 N N7A COA . . . N 4 75.718 2.654 70.149 1 129.93 ? N7A COA 591 B 1 HETATM 9 C C8A COA . . . N 4 75.968 3.648 70.998 1 130.55 ? C8A COA 591 B 1 HETATM 10 N N9A COA . . . N 4 75.419 3.375 72.18 1 131.07 ? N9A COA 591 B 1 HETATM 11 C C1B COA . . . N 4 75.364 4.288 73.341 1 132.09 ? C1B COA 591 B 1 HETATM 12 C C2B COA . . . N 4 76.276 3.836 74.479 1 133.42 ? C2B COA 591 B 1 HETATM 13 O O2B COA . . . N 4 75.575 2.891 75.29 1 137.04 ? O2B COA 591 B 1 HETATM 14 C C3B COA . . . N 4 76.516 5.141 75.238 1 133.69 ? C3B COA 591 B 1 HETATM 15 O O3B COA . . . N 4 75.656 5.202 76.38 1 134.52 ? O3B COA 591 B 1 HETATM 16 P P3B COA . . . N 4 76.028 6.155 77.623 1 134.21 ? P3B COA 591 B 1 HETATM 17 O O7A COA . . . N 4 77.32 5.782 78.24 1 133.46 ? O7A COA 591 B 1 HETATM 18 O O8A COA . . . N 4 74.793 6.04 78.651 1 132.11 ? O8A COA 591 B 1 HETATM 19 O O9A COA . . . N 4 76.035 7.66 77.057 1 133.11 ? O9A COA 591 B 1 HETATM 20 C C4B COA . . . N 4 76.138 6.236 74.239 1 133.18 ? C4B COA 591 B 1 HETATM 21 O O4B COA . . . N 4 75.886 5.576 72.988 1 132.12 ? O4B COA 591 B 1 HETATM 22 C C5B COA . . . N 4 77.331 7.165 74.021 1 135.71 ? C5B COA 591 B 1 HETATM 23 O O5B COA . . . N 4 78.004 6.79 72.818 1 138.85 ? O5B COA 591 B 1 HETATM 24 P P1A COA . . . N 4 79.258 7.642 72.277 1 142.73 ? P1A COA 591 B 1 HETATM 25 O O1A COA . . . N 4 80.25 6.674 71.76 1 139.3 ? O1A COA 591 B 1 HETATM 26 O O2A COA . . . N 4 79.671 8.562 73.36 1 138.72 ? O2A COA 591 B 1 HETATM 27 O O3A COA . . . N 4 78.607 8.478 71.062 1 141.91 ? O3A COA 591 B 1 HETATM 28 P P2A COA . . . N 4 79.454 9.058 69.82 1 142.04 ? P2A COA 591 B 1 HETATM 29 O O4A COA . . . N 4 80.864 9.213 70.237 1 139.86 ? O4A COA 591 B 1 HETATM 30 O O5A COA . . . N 4 78.754 10.265 69.326 1 138.08 ? O5A COA 591 B 1 HETATM 31 O O6A COA . . . N 4 79.349 7.896 68.706 1 137.68 ? O6A COA 591 B 1 HETATM 32 C CBP COA . . . N 4 78.656 5.709 67.777 1 127.43 ? CBP COA 591 B 1 HETATM 33 C CCP COA . . . N 4 78.544 6.73 68.914 1 130.64 ? CCP COA 591 B 1 HETATM 34 C CDP COA . . . N 4 77.248 5.351 67.297 1 126.72 ? CDP COA 591 B 1 HETATM 35 C CEP COA . . . N 4 79.455 6.297 66.61 1 123.34 ? CEP COA 591 B 1 HETATM 36 C CAP COA . . . N 4 79.34 4.442 68.301 1 126.5 ? CAP COA 591 B 1 HETATM 37 O OAP COA . . . N 4 78.661 3.986 69.475 1 123.79 ? OAP COA 591 B 1 HETATM 38 C C9P COA . . . N 4 79.34 3.331 67.244 1 124.58 ? C9P COA 591 B 1 HETATM 39 O O9P COA . . . N 4 80.221 3.249 66.395 1 124.82 ? O9P COA 591 B 1 HETATM 40 N N8P COA . . . N 4 78.328 2.468 67.334 1 120.93 ? N8P COA 591 B 1 HETATM 41 C C7P COA . . . N 4 78.077 1.477 66.282 1 117.43 ? C7P COA 591 B 1 HETATM 42 C C6P COA . . . N 4 76.637 0.972 66.4 1 115.38 ? C6P COA 591 B 1 HETATM 43 C C5P COA . . . N 4 76.466 -0.308 65.581 1 114.17 ? C5P COA 591 B 1 HETATM 44 O O5P COA . . . N 4 77.438 -0.839 65.046 1 114.05 ? O5P COA 591 B 1 HETATM 45 N N4P COA . . . N 4 75.221 -0.771 65.504 1 111.92 ? N4P COA 591 B 1 HETATM 46 C C3P COA . . . N 4 74.854 -1.9 64.635 1 107.93 ? C3P COA 591 B 1 HETATM 47 C C2P COA . . . N 4 73.441 -2.388 64.969 1 103.91 ? C2P COA 591 B 1 HETATM 48 S S1P COA . . . N 4 72.177 -1.833 63.766 1 103.01 ? S1P COA 591 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 75 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #