data_3U9S # _model_server_result.job_id x8B650WxlKJ35-JQGUotaQ _model_server_result.datetime_utc '2024-11-29 13:54:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":591}' # _entry.id 3U9S # _exptl.entry_id 3U9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.74 _cell.angle_gamma 90 _cell.entry_id 3U9S _cell.length_a 131.51 _cell.length_b 255.34 _cell.length_c 152.67 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 617 A LYS 681 1_555 M C11 BTI . A BTI 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 I NZ LYS 617 I LYS 681 1_555 R C11 BTI . I BTI 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U9S _atom_sites.fract_transf_matrix[1][1] 0.007604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 BTI A 1 801 801 BTI BTI . N 4 COA B 1 591 591 COA COA . O 4 COA D 1 591 591 COA COA . P 4 COA F 1 591 591 COA COA . Q 4 COA H 1 591 591 COA COA . R 3 BTI I 1 801 801 BTI BTI . S 4 COA J 1 591 591 COA COA . T 4 COA L 1 591 591 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . O 4 -9.099 3.441 48.401 1 126.63 ? N1A COA 591 D 1 HETATM 2 C C2A COA . . . O 4 -10.048 4.163 47.834 1 125.48 ? C2A COA 591 D 1 HETATM 3 N N3A COA . . . O 4 -10.453 5.301 48.363 1 127.51 ? N3A COA 591 D 1 HETATM 4 C C4A COA . . . O 4 -9.913 5.762 49.5 1 130.67 ? C4A COA 591 D 1 HETATM 5 C C5A COA . . . O 4 -8.918 5.024 50.124 1 130.24 ? C5A COA 591 D 1 HETATM 6 C C6A COA . . . O 4 -8.51 3.837 49.539 1 128.15 ? C6A COA 591 D 1 HETATM 7 N N6A COA . . . O 4 -7.512 3.136 50.067 1 125.47 ? N6A COA 591 D 1 HETATM 8 N N7A COA . . . O 4 -8.569 5.684 51.224 1 129.54 ? N7A COA 591 D 1 HETATM 9 C C8A COA . . . O 4 -9.302 6.792 51.288 1 129.49 ? C8A COA 591 D 1 HETATM 10 N N9A COA . . . O 4 -10.118 6.845 50.238 1 131.87 ? N9A COA 591 D 1 HETATM 11 C C1B COA . . . O 4 -11.007 7.972 49.89 1 133.64 ? C1B COA 591 D 1 HETATM 12 C C2B COA . . . O 4 -12.476 7.673 50.18 1 134.3 ? C2B COA 591 D 1 HETATM 13 O O2B COA . . . O 4 -13.061 7.012 49.054 1 135.99 ? O2B COA 591 D 1 HETATM 14 C C3B COA . . . O 4 -13.069 9.071 50.347 1 134.94 ? C3B COA 591 D 1 HETATM 15 O O3B COA . . . O 4 -13.709 9.449 49.125 1 136.3 ? O3B COA 591 D 1 HETATM 16 P P3B COA . . . O 4 -14.908 10.525 49.122 1 139 ? P3B COA 591 D 1 HETATM 17 O O7A COA . . . O 4 -16.071 10.078 49.922 1 135.69 ? O7A COA 591 D 1 HETATM 18 O O8A COA . . . O 4 -15.28 10.76 47.573 1 136.37 ? O8A COA 591 D 1 HETATM 19 O O9A COA . . . O 4 -14.286 11.909 49.659 1 138.19 ? O9A COA 591 D 1 HETATM 20 C C4B COA . . . O 4 -11.856 9.968 50.613 1 135.29 ? C4B COA 591 D 1 HETATM 21 O O4B COA . . . O 4 -10.72 9.096 50.731 1 134.87 ? O4B COA 591 D 1 HETATM 22 C C5B COA . . . O 4 -12.003 10.701 51.947 1 135.99 ? C5B COA 591 D 1 HETATM 23 O O5B COA . . . O 4 -11.194 10.077 52.948 1 138.79 ? O5B COA 591 D 1 HETATM 24 P P1A COA . . . O 4 -11.215 10.596 54.472 1 145.55 ? P1A COA 591 D 1 HETATM 25 O O1A COA . . . O 4 -11.312 9.415 55.361 1 141.6 ? O1A COA 591 D 1 HETATM 26 O O2A COA . . . O 4 -12.257 11.643 54.578 1 142.29 ? O2A COA 591 D 1 HETATM 27 O O3A COA . . . O 4 -9.763 11.278 54.624 1 143.45 ? O3A COA 591 D 1 HETATM 28 P P2A COA . . . O 4 -9.01 11.405 56.044 1 143.68 ? P2A COA 591 D 1 HETATM 29 O O4A COA . . . O 4 -10.018 11.468 57.126 1 139.19 ? O4A COA 591 D 1 HETATM 30 O O5A COA . . . O 4 -8.056 12.531 55.924 1 138.62 ? O5A COA 591 D 1 HETATM 31 O O6A COA . . . O 4 -8.193 10.018 56.144 1 137.29 ? O6A COA 591 D 1 HETATM 32 C CBP COA . . . O 4 -7.445 7.777 55.422 1 126.39 ? CBP COA 591 D 1 HETATM 33 C CCP COA . . . O 4 -8.275 9.026 55.114 1 129.76 ? CCP COA 591 D 1 HETATM 34 C CDP COA . . . O 4 -6.43 7.572 54.295 1 126.74 ? CDP COA 591 D 1 HETATM 35 C CEP COA . . . O 4 -6.698 7.965 56.744 1 124.1 ? CEP COA 591 D 1 HETATM 36 C CAP COA . . . O 4 -8.371 6.56 55.52 1 126.11 ? CAP COA 591 D 1 HETATM 37 O OAP COA . . . O 4 -9.151 6.474 54.323 1 124.62 ? OAP COA 591 D 1 HETATM 38 C C9P COA . . . O 4 -7.607 5.248 55.739 1 125.28 ? C9P COA 591 D 1 HETATM 39 O O9P COA . . . O 4 -7.304 4.859 56.867 1 124.64 ? O9P COA 591 D 1 HETATM 40 N N8P COA . . . O 4 -7.343 4.555 54.635 1 122.36 ? N8P COA 591 D 1 HETATM 41 C C7P COA . . . O 4 -6.303 3.517 54.593 1 118.08 ? C7P COA 591 D 1 HETATM 42 C C6P COA . . . O 4 -5.857 3.283 53.147 1 116.16 ? C6P COA 591 D 1 HETATM 43 C C5P COA . . . O 4 -5.268 1.877 53.015 1 115.74 ? C5P COA 591 D 1 HETATM 44 O O5P COA . . . O 4 -5.369 1.09 53.956 1 116.17 ? O5P COA 591 D 1 HETATM 45 N N4P COA . . . O 4 -4.666 1.589 51.863 1 111.82 ? N4P COA 591 D 1 HETATM 46 C C3P COA . . . O 4 -3.778 0.423 51.72 1 106.06 ? C3P COA 591 D 1 HETATM 47 C C2P COA . . . O 4 -3.572 0.069 50.246 1 102.53 ? C2P COA 591 D 1 HETATM 48 S S1P COA . . . O 4 -1.811 -0.072 49.767 1 102.05 ? S1P COA 591 D 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 48 #