data_3U9S # _model_server_result.job_id 00DbzWlnYyQP8DlWtt6L9g _model_server_result.datetime_utc '2024-12-01 21:21:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":591}' # _entry.id 3U9S # _exptl.entry_id 3U9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.74 _cell.angle_gamma 90 _cell.entry_id 3U9S _cell.length_a 131.51 _cell.length_b 255.34 _cell.length_c 152.67 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 617 A LYS 681 1_555 M C11 BTI . A BTI 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 I NZ LYS 617 I LYS 681 1_555 R C11 BTI . I BTI 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U9S _atom_sites.fract_transf_matrix[1][1] 0.007604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 BTI A 1 801 801 BTI BTI . N 4 COA B 1 591 591 COA COA . O 4 COA D 1 591 591 COA COA . P 4 COA F 1 591 591 COA COA . Q 4 COA H 1 591 591 COA COA . R 3 BTI I 1 801 801 BTI BTI . S 4 COA J 1 591 591 COA COA . T 4 COA L 1 591 591 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . S 4 -4.986 -1.305 12.585 1 123.77 ? N1A COA 591 J 1 HETATM 2 C C2A COA . . . S 4 -6.036 -2 12.991 1 122.8 ? C2A COA 591 J 1 HETATM 3 N N3A COA . . . S 4 -6.366 -3.146 12.427 1 124.02 ? N3A COA 591 J 1 HETATM 4 C C4A COA . . . S 4 -5.639 -3.639 11.413 1 127.59 ? C4A COA 591 J 1 HETATM 5 C C5A COA . . . S 4 -4.533 -2.938 10.958 1 126.73 ? C5A COA 591 J 1 HETATM 6 C C6A COA . . . S 4 -4.212 -1.737 11.581 1 125.07 ? C6A COA 591 J 1 HETATM 7 N N6A COA . . . S 4 -3.14 -1.047 11.199 1 123.64 ? N6A COA 591 J 1 HETATM 8 N N7A COA . . . S 4 -4.002 -3.628 9.953 1 128.36 ? N7A COA 591 J 1 HETATM 9 C C8A COA . . . S 4 -4.742 -4.721 9.781 1 129.45 ? C8A COA 591 J 1 HETATM 10 N N9A COA . . . S 4 -5.735 -4.737 10.668 1 130.39 ? N9A COA 591 J 1 HETATM 11 C C1B COA . . . S 4 -6.729 -5.822 10.841 1 133.03 ? C1B COA 591 J 1 HETATM 12 C C2B COA . . . S 4 -8.117 -5.438 10.326 1 135.34 ? C2B COA 591 J 1 HETATM 13 O O2B COA . . . S 4 -8.862 -4.797 11.366 1 137.58 ? O2B COA 591 J 1 HETATM 14 C C3B COA . . . S 4 -8.741 -6.788 9.965 1 134.85 ? C3B COA 591 J 1 HETATM 15 O O3B COA . . . S 4 -9.685 -7.14 10.982 1 136.3 ? O3B COA 591 J 1 HETATM 16 P P3B COA . . . S 4 -10.996 -8.02 10.663 1 136.82 ? P3B COA 591 J 1 HETATM 17 O O7A COA . . . S 4 -11.878 -7.398 9.651 1 133.66 ? O7A COA 591 J 1 HETATM 18 O O8A COA . . . S 4 -11.729 -8.196 12.086 1 136.32 ? O8A COA 591 J 1 HETATM 19 O O9A COA . . . S 4 -10.48 -9.48 10.222 1 137.15 ? O9A COA 591 J 1 HETATM 20 C C4B COA . . . S 4 -7.557 -7.759 9.948 1 132.77 ? C4B COA 591 J 1 HETATM 21 O O4B COA . . . S 4 -6.367 -6.959 10.044 1 132.12 ? O4B COA 591 J 1 HETATM 22 C C5B COA . . . S 4 -7.474 -8.486 8.605 1 132.46 ? C5B COA 591 J 1 HETATM 23 O O5B COA . . . S 4 -6.428 -7.917 7.814 1 133.53 ? O5B COA 591 J 1 HETATM 24 P P1A COA . . . S 4 -6.155 -8.441 6.316 1 135.82 ? P1A COA 591 J 1 HETATM 25 O O1A COA . . . S 4 -5.894 -7.274 5.445 1 134.85 ? O1A COA 591 J 1 HETATM 26 O O2A COA . . . S 4 -7.267 -9.344 5.944 1 137.53 ? O2A COA 591 J 1 HETATM 27 O O3A COA . . . S 4 -4.801 -9.292 6.505 1 133.75 ? O3A COA 591 J 1 HETATM 28 P P2A COA . . . S 4 -3.785 -9.505 5.275 1 130.8 ? P2A COA 591 J 1 HETATM 29 O O4A COA . . . S 4 -4.572 -9.561 4.023 1 130.81 ? O4A COA 591 J 1 HETATM 30 O O5A COA . . . S 4 -2.925 -10.666 5.597 1 127.76 ? O5A COA 591 J 1 HETATM 31 O O6A COA . . . S 4 -2.908 -8.151 5.306 1 133.17 ? O6A COA 591 J 1 HETATM 32 C CBP COA . . . S 4 -2.23 -5.898 6.087 1 124.51 ? CBP COA 591 J 1 HETATM 33 C CCP COA . . . S 4 -3.136 -7.121 6.276 1 128.14 ? CCP COA 591 J 1 HETATM 34 C CDP COA . . . S 4 -1.472 -5.641 7.391 1 124.6 ? CDP COA 591 J 1 HETATM 35 C CEP COA . . . S 4 -1.223 -6.146 4.961 1 121.18 ? CEP COA 591 J 1 HETATM 36 C CAP COA . . . S 4 -3.084 -4.674 5.742 1 123.78 ? CAP COA 591 J 1 HETATM 37 O OAP COA . . . S 4 -4.074 -4.472 6.754 1 121.1 ? OAP COA 591 J 1 HETATM 38 C C9P COA . . . S 4 -2.223 -3.414 5.625 1 122.58 ? C9P COA 591 J 1 HETATM 39 O O9P COA . . . S 4 -1.733 -3.075 4.549 1 124.01 ? O9P COA 591 J 1 HETATM 40 N N8P COA . . . S 4 -2.075 -2.726 6.753 1 118.94 ? N8P COA 591 J 1 HETATM 41 C C7P COA . . . S 4 -1.029 -1.706 6.913 1 116.01 ? C7P COA 591 J 1 HETATM 42 C C6P COA . . . S 4 -0.882 -1.365 8.398 1 115.72 ? C6P COA 591 J 1 HETATM 43 C C5P COA . . . S 4 -0.363 0.065 8.56 1 116.13 ? C5P COA 591 J 1 HETATM 44 O O5P COA . . . S 4 -0.136 0.752 7.565 1 116.44 ? O5P COA 591 J 1 HETATM 45 N N4P COA . . . S 4 -0.191 0.473 9.816 1 113.09 ? N4P COA 591 J 1 HETATM 46 C C3P COA . . . S 4 0.594 1.67 10.153 1 106.96 ? C3P COA 591 J 1 HETATM 47 C C2P COA . . . S 4 0.584 1.902 11.665 1 101.29 ? C2P COA 591 J 1 HETATM 48 S S1P COA . . . S 4 2.22 1.633 12.44 1 101.97 ? S1P COA 591 J 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 131 _model_server_stats.query_time_ms 554 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #