data_3U9Y # _model_server_result.job_id XpnxdlIfiLXKTRGtfZXoUg _model_server_result.datetime_utc '2024-10-11 00:30:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1165}' # _entry.id 3U9Y # _exptl.entry_id 3U9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.463 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(3-{[4-(cyclopropylcarbonyl)piperazin-1-yl]carbonyl}-4-fluorobenzyl)phthalazin-1(2H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U9Y _cell.length_a 66.56 _cell.length_b 66.56 _cell.length_c 115.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B ZN ZN . A ZN 1 1_555 A SG CYS 159 A CYS 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 B ZN ZN . A ZN 1 1_555 A ND1 HIS 162 A HIS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 B ZN ZN . A ZN 1 1_555 A SG CYS 167 A CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc4 B ZN ZN . A ZN 1 1_555 A SG CYS 170 A CYS 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'C24 H23 F N4 O3' _chem_comp.formula_weight 434.463 _chem_comp.id 09L _chem_comp.mon_nstd_flag . _chem_comp.name 4-(3-{[4-(cyclopropylcarbonyl)piperazin-1-yl]carbonyl}-4-fluorobenzyl)phthalazin-1(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Olaparib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBF CBD 09L doub 1 n y CBF CBE 09L sing 2 n y CBD CBA 09L sing 3 n y OAD CBC 09L doub 4 n n CBE CBB 09L doub 5 n y CBA CBC 09L sing 6 n n CBA CAZ 09L doub 7 n y CBC NAH 09L sing 8 n n CBB CAZ 09L sing 9 n y CAZ CAY 09L sing 10 n n NAH NAG 09L sing 11 n n CAY NAG 09L doub 12 n n CAY CAV 09L sing 13 n n CAV CAT 09L sing 14 n n OAC CAQ 09L doub 15 n n CAS CAT 09L doub 16 n y CAS CAR 09L sing 17 n y CAT CAW 09L sing 18 n y CAQ CAR 09L sing 19 n n CAQ NAF 09L sing 20 n n CAO NAF 09L sing 21 n n CAO CAM 09L sing 22 n n CAR CAU 09L doub 23 n y NAF CAP 09L sing 24 n n CAW CAX 09L doub 25 n y CAM NAE 09L sing 26 n n CAP CAN 09L sing 27 n n CAU CAX 09L sing 28 n y CAU FAA 09L sing 29 n n NAE CAN 09L sing 30 n n NAE CAL 09L sing 31 n n OAB CAL 09L doub 32 n n CAL CAI 09L sing 33 n n CAI CAJ 09L sing 34 n n CAI CAK 09L sing 35 n n CAJ CAK 09L sing 36 n n CAJ H1 09L sing 37 n n CAJ H2 09L sing 38 n n CAK H3 09L sing 39 n n CAK H4 09L sing 40 n n CAI H5 09L sing 41 n n CAM H6 09L sing 42 n n CAM H7 09L sing 43 n n CAO H8 09L sing 44 n n CAO H9 09L sing 45 n n CAN H10 09L sing 46 n n CAN H11 09L sing 47 n n CAP H12 09L sing 48 n n CAP H13 09L sing 49 n n CAS H14 09L sing 50 n n CAX H15 09L sing 51 n n CAW H16 09L sing 52 n n CAV H17 09L sing 53 n n CAV H18 09L sing 54 n n CBB H19 09L sing 55 n n CBE H20 09L sing 56 n n CBF H21 09L sing 57 n n CBD H22 09L sing 58 n n NAH H23 09L sing 59 n n # _atom_sites.entry_id 3U9Y _atom_sites.fract_transf_matrix[1][1] 0.015024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1 1 ZN ZN . C 3 SO4 A 1 1163 1 SO4 SO4 . D 3 SO4 A 1 2 2 SO4 SO4 . E 4 GOL A 1 1164 1 GOL GOL . F 5 09L A 1 1165 1 09L 09L . G 6 HOH A 1 3 3 HOH HOH . G 6 HOH A 2 4 4 HOH HOH . G 6 HOH A 3 5 5 HOH HOH . G 6 HOH A 4 6 6 HOH HOH . G 6 HOH A 5 7 7 HOH HOH . G 6 HOH A 6 8 8 HOH HOH . G 6 HOH A 7 9 9 HOH HOH . G 6 HOH A 8 10 10 HOH HOH . G 6 HOH A 9 11 11 HOH HOH . G 6 HOH A 10 12 12 HOH HOH . G 6 HOH A 11 13 13 HOH HOH . G 6 HOH A 12 14 14 HOH HOH . G 6 HOH A 13 15 15 HOH HOH . G 6 HOH A 14 16 16 HOH HOH . G 6 HOH A 15 17 17 HOH HOH . G 6 HOH A 16 18 18 HOH HOH . G 6 HOH A 17 19 19 HOH HOH . G 6 HOH A 18 20 20 HOH HOH . G 6 HOH A 19 21 21 HOH HOH . G 6 HOH A 20 22 22 HOH HOH . G 6 HOH A 21 23 23 HOH HOH . G 6 HOH A 22 24 24 HOH HOH . G 6 HOH A 23 25 25 HOH HOH . G 6 HOH A 24 26 26 HOH HOH . G 6 HOH A 25 27 27 HOH HOH . G 6 HOH A 26 28 28 HOH HOH . G 6 HOH A 27 29 29 HOH HOH . G 6 HOH A 28 30 30 HOH HOH . G 6 HOH A 29 31 31 HOH HOH . G 6 HOH A 30 32 32 HOH HOH . G 6 HOH A 31 33 33 HOH HOH . G 6 HOH A 32 34 34 HOH HOH . G 6 HOH A 33 35 35 HOH HOH . G 6 HOH A 34 36 36 HOH HOH . G 6 HOH A 35 37 37 HOH HOH . G 6 HOH A 36 38 38 HOH HOH . G 6 HOH A 37 39 39 HOH HOH . G 6 HOH A 38 40 40 HOH HOH . G 6 HOH A 39 41 41 HOH HOH . G 6 HOH A 40 42 42 HOH HOH . G 6 HOH A 41 43 43 HOH HOH . G 6 HOH A 42 44 44 HOH HOH . G 6 HOH A 43 45 45 HOH HOH . G 6 HOH A 44 46 46 HOH HOH . G 6 HOH A 45 47 47 HOH HOH . G 6 HOH A 46 48 48 HOH HOH . G 6 HOH A 47 49 49 HOH HOH . G 6 HOH A 48 50 50 HOH HOH . G 6 HOH A 49 51 51 HOH HOH . G 6 HOH A 50 52 52 HOH HOH . G 6 HOH A 51 53 53 HOH HOH . G 6 HOH A 52 54 54 HOH HOH . G 6 HOH A 53 55 55 HOH HOH . G 6 HOH A 54 56 56 HOH HOH . G 6 HOH A 55 57 57 HOH HOH . G 6 HOH A 56 58 58 HOH HOH . G 6 HOH A 57 59 59 HOH HOH . G 6 HOH A 58 60 60 HOH HOH . G 6 HOH A 59 61 61 HOH HOH . G 6 HOH A 60 62 62 HOH HOH . G 6 HOH A 61 63 63 HOH HOH . G 6 HOH A 62 64 64 HOH HOH . G 6 HOH A 63 65 65 HOH HOH . G 6 HOH A 64 66 66 HOH HOH . G 6 HOH A 65 67 67 HOH HOH . G 6 HOH A 66 68 68 HOH HOH . G 6 HOH A 67 69 69 HOH HOH . G 6 HOH A 68 70 70 HOH HOH . G 6 HOH A 69 71 71 HOH HOH . G 6 HOH A 70 72 72 HOH HOH . G 6 HOH A 71 73 73 HOH HOH . G 6 HOH A 72 74 74 HOH HOH . G 6 HOH A 73 75 75 HOH HOH . G 6 HOH A 74 76 76 HOH HOH . G 6 HOH A 75 77 77 HOH HOH . G 6 HOH A 76 78 78 HOH HOH . G 6 HOH A 77 79 79 HOH HOH . G 6 HOH A 78 80 80 HOH HOH . G 6 HOH A 79 81 81 HOH HOH . G 6 HOH A 80 82 82 HOH HOH . G 6 HOH A 81 83 83 HOH HOH . G 6 HOH A 82 84 84 HOH HOH . G 6 HOH A 83 85 85 HOH HOH . G 6 HOH A 84 86 86 HOH HOH . G 6 HOH A 85 87 87 HOH HOH . G 6 HOH A 86 88 88 HOH HOH . G 6 HOH A 87 89 89 HOH HOH . G 6 HOH A 88 90 90 HOH HOH . G 6 HOH A 89 91 91 HOH HOH . G 6 HOH A 90 92 92 HOH HOH . G 6 HOH A 91 93 93 HOH HOH . G 6 HOH A 92 94 94 HOH HOH . G 6 HOH A 93 95 95 HOH HOH . G 6 HOH A 94 96 96 HOH HOH . G 6 HOH A 95 97 97 HOH HOH . G 6 HOH A 96 98 98 HOH HOH . G 6 HOH A 97 99 99 HOH HOH . G 6 HOH A 98 100 100 HOH HOH . G 6 HOH A 99 101 101 HOH HOH . G 6 HOH A 100 102 102 HOH HOH . G 6 HOH A 101 103 103 HOH HOH . G 6 HOH A 102 104 104 HOH HOH . G 6 HOH A 103 105 105 HOH HOH . G 6 HOH A 104 106 106 HOH HOH . G 6 HOH A 105 107 107 HOH HOH . G 6 HOH A 106 108 108 HOH HOH . G 6 HOH A 107 109 109 HOH HOH . G 6 HOH A 108 110 110 HOH HOH . G 6 HOH A 109 111 111 HOH HOH . G 6 HOH A 110 112 112 HOH HOH . G 6 HOH A 111 113 113 HOH HOH . G 6 HOH A 112 114 114 HOH HOH . G 6 HOH A 113 115 115 HOH HOH . G 6 HOH A 114 116 116 HOH HOH . G 6 HOH A 115 117 117 HOH HOH . G 6 HOH A 116 118 118 HOH HOH . G 6 HOH A 117 119 119 HOH HOH . G 6 HOH A 118 120 120 HOH HOH . G 6 HOH A 119 121 121 HOH HOH . G 6 HOH A 120 122 122 HOH HOH . G 6 HOH A 121 123 123 HOH HOH . G 6 HOH A 122 124 124 HOH HOH . G 6 HOH A 123 125 125 HOH HOH . G 6 HOH A 124 126 126 HOH HOH . G 6 HOH A 125 127 127 HOH HOH . G 6 HOH A 126 128 128 HOH HOH . G 6 HOH A 127 129 129 HOH HOH . G 6 HOH A 128 130 130 HOH HOH . G 6 HOH A 129 131 131 HOH HOH . G 6 HOH A 130 132 132 HOH HOH . G 6 HOH A 131 133 133 HOH HOH . G 6 HOH A 132 134 134 HOH HOH . G 6 HOH A 133 135 135 HOH HOH . G 6 HOH A 134 136 136 HOH HOH . G 6 HOH A 135 137 137 HOH HOH . G 6 HOH A 136 138 138 HOH HOH . G 6 HOH A 137 1166 1 HOH HOH . G 6 HOH A 138 1167 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ 09L . . . F 5 5.975 -4.357 24.294 1 35.18 ? CAJ 09L 1165 A 1 HETATM 2 C CAK 09L . . . F 5 6.879 -3.16 24.601 1 34.96 ? CAK 09L 1165 A 1 HETATM 3 C CAI 09L . . . F 5 6.678 -3.621 23.159 1 33.78 ? CAI 09L 1165 A 1 HETATM 4 C CAL 09L . . . F 5 5.754 -2.737 22.376 1 32.47 ? CAL 09L 1165 A 1 HETATM 5 O OAB 09L . . . F 5 4.572 -3.052 22.317 1 30.12 ? OAB 09L 1165 A 1 HETATM 6 N NAE 09L . . . F 5 6.232 -1.631 21.803 1 34.16 ? NAE 09L 1165 A 1 HETATM 7 C CAM 09L . . . F 5 5.337 -0.731 21.042 1 34.98 ? CAM 09L 1165 A 1 HETATM 8 C CAO 09L . . . F 5 6.082 0.053 19.959 1 34.38 ? CAO 09L 1165 A 1 HETATM 9 C CAN 09L . . . F 5 7.686 -1.349 21.882 1 36.1 ? CAN 09L 1165 A 1 HETATM 10 C CAP 09L . . . F 5 8.088 0.102 21.561 1 34.95 ? CAP 09L 1165 A 1 HETATM 11 N NAF 09L . . . F 5 7.285 0.736 20.486 1 33.9 ? NAF 09L 1165 A 1 HETATM 12 C CAQ 09L . . . F 5 7.657 1.907 19.928 1 33.91 ? CAQ 09L 1165 A 1 HETATM 13 O OAC 09L . . . F 5 7.015 2.359 18.99 1 32.29 ? OAC 09L 1165 A 1 HETATM 14 C CAR 09L . . . F 5 8.944 2.64 20.289 1 34.12 ? CAR 09L 1165 A 1 HETATM 15 C CAS 09L . . . F 5 9.65 3.137 19.187 1 33.24 ? CAS 09L 1165 A 1 HETATM 16 C CAU 09L . . . F 5 9.435 2.805 21.608 1 34.85 ? CAU 09L 1165 A 1 HETATM 17 F FAA 09L . . . F 5 8.762 2.336 22.701 1 35.38 ? FAA 09L 1165 A 1 HETATM 18 C CAX 09L . . . F 5 10.64 3.48 21.787 1 33.21 ? CAX 09L 1165 A 1 HETATM 19 C CAW 09L . . . F 5 11.338 3.986 20.681 1 32.37 ? CAW 09L 1165 A 1 HETATM 20 C CAT 09L . . . F 5 10.849 3.802 19.386 1 31.29 ? CAT 09L 1165 A 1 HETATM 21 C CAV 09L . . . F 5 11.617 4.381 18.221 1 30.57 ? CAV 09L 1165 A 1 HETATM 22 C CAY 09L . . . F 5 11.814 3.461 17.03 1 27.75 ? CAY 09L 1165 A 1 HETATM 23 C CAZ 09L . . . F 5 11.943 3.958 15.732 1 26.74 ? CAZ 09L 1165 A 1 HETATM 24 C CBB 09L . . . F 5 11.859 5.331 15.501 1 27.53 ? CBB 09L 1165 A 1 HETATM 25 C CBE 09L . . . F 5 11.96 5.835 14.203 1 27.46 ? CBE 09L 1165 A 1 HETATM 26 C CBF 09L . . . F 5 12.142 4.938 13.156 1 27.84 ? CBF 09L 1165 A 1 HETATM 27 C CBD 09L . . . F 5 12.235 3.566 13.386 1 26.14 ? CBD 09L 1165 A 1 HETATM 28 C CBA 09L . . . F 5 12.14 3.075 14.676 1 24.82 ? CBA 09L 1165 A 1 HETATM 29 C CBC 09L . . . F 5 12.213 1.714 14.97 1 23.52 ? CBC 09L 1165 A 1 HETATM 30 O OAD 09L . . . F 5 12.39 0.853 14.104 1 18.76 ? OAD 09L 1165 A 1 HETATM 31 N NAH 09L . . . F 5 12.071 1.332 16.317 1 24.54 ? NAH 09L 1165 A 1 HETATM 32 N NAG 09L . . . F 5 11.896 2.142 17.239 1 25.83 ? NAG 09L 1165 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #