data_3UA1 # _model_server_result.job_id Qf5QnoE0GHrNtxOcNrVhlA _model_server_result.datetime_utc '2024-11-08 10:03:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ua1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":508}' # _entry.id 3UA1 # _exptl.entry_id 3UA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UA1 _cell.length_a 77.67 _cell.length_b 99.39 _cell.length_c 131.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 422 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 442 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 508 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.297 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 218 n n CHA C4D HEM doub 219 n n CHA HHA HEM sing 220 n n CHB C4A HEM sing 221 n n CHB C1B HEM doub 222 n n CHB HHB HEM sing 223 n n CHC C4B HEM sing 224 n n CHC C1C HEM doub 225 n n CHC HHC HEM sing 226 n n CHD C4C HEM doub 227 n n CHD C1D HEM sing 228 n n CHD HHD HEM sing 229 n n C1A C2A HEM doub 230 n y C1A NA HEM sing 231 n y C2A C3A HEM sing 232 n y C2A CAA HEM sing 233 n n C3A C4A HEM doub 234 n y C3A CMA HEM sing 235 n n C4A NA HEM sing 236 n y CMA HMA HEM sing 237 n n CMA HMAA HEM sing 238 n n CMA HMAB HEM sing 239 n n CAA CBA HEM sing 240 n n CAA HAA HEM sing 241 n n CAA HAAA HEM sing 242 n n CBA CGA HEM sing 243 n n CBA HBA HEM sing 244 n n CBA HBAA HEM sing 245 n n CGA O1A HEM doub 246 n n CGA O2A HEM sing 247 n n C1B C2B HEM sing 248 n n C1B NB HEM sing 249 n n C2B C3B HEM doub 250 n n C2B CMB HEM sing 251 n n C3B C4B HEM sing 252 n n C3B CAB HEM sing 253 n n C4B NB HEM doub 254 n n CMB HMB HEM sing 255 n n CMB HMBA HEM sing 256 n n CMB HMBB HEM sing 257 n n CAB CBB HEM doub 258 n n CAB HAB HEM sing 259 n n CBB HBB HEM sing 260 n n CBB HBBA HEM sing 261 n n C1C C2C HEM sing 262 n y C1C NC HEM sing 263 n y C2C C3C HEM doub 264 n y C2C CMC HEM sing 265 n n C3C C4C HEM sing 266 n y C3C CAC HEM sing 267 n n C4C NC HEM sing 268 n y CMC HMC HEM sing 269 n n CMC HMCA HEM sing 270 n n CMC HMCB HEM sing 271 n n CAC CBC HEM doub 272 n n CAC HAC HEM sing 273 n n CBC HBC HEM sing 274 n n CBC HBCA HEM sing 275 n n C1D C2D HEM sing 276 n n C1D ND HEM doub 277 n n C2D C3D HEM doub 278 n n C2D CMD HEM sing 279 n n C3D C4D HEM sing 280 n n C3D CAD HEM sing 281 n n C4D ND HEM sing 282 n n CMD HMD HEM sing 283 n n CMD HMDA HEM sing 284 n n CMD HMDB HEM sing 285 n n CAD CBD HEM sing 286 n n CAD HAD HEM sing 287 n n CAD HADA HEM sing 288 n n CBD CGD HEM sing 289 n n CBD HBD HEM sing 290 n n CBD HBDA HEM sing 291 n n CGD O1D HEM doub 292 n n CGD O2D HEM sing 293 n n O2A H2A HEM sing 294 n n O2D H2D HEM sing 295 n n FE NA HEM sing 296 n n FE NB HEM sing 297 n n FE NC HEM sing 298 n n FE ND HEM sing 299 n n # _atom_sites.entry_id 3UA1 _atom_sites.fract_transf_matrix[1][1] 0.012875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 508 500 HEM HEM . C 3 08Y A 1 600 600 08Y BEC . D 4 HOH A 1 509 1 HOH HOH . D 4 HOH A 2 510 2 HOH HOH . D 4 HOH A 3 511 3 HOH HOH . D 4 HOH A 4 512 4 HOH HOH . D 4 HOH A 5 513 5 HOH HOH . D 4 HOH A 6 514 6 HOH HOH . D 4 HOH A 7 515 7 HOH HOH . D 4 HOH A 8 516 8 HOH HOH . D 4 HOH A 9 517 9 HOH HOH . D 4 HOH A 10 518 10 HOH HOH . D 4 HOH A 11 519 11 HOH HOH . D 4 HOH A 12 520 12 HOH HOH . D 4 HOH A 13 521 13 HOH HOH . D 4 HOH A 14 522 14 HOH HOH . D 4 HOH A 15 523 15 HOH HOH . D 4 HOH A 16 524 16 HOH HOH . D 4 HOH A 17 525 17 HOH HOH . D 4 HOH A 18 526 18 HOH HOH . D 4 HOH A 19 527 19 HOH HOH . D 4 HOH A 20 528 20 HOH HOH . D 4 HOH A 21 529 21 HOH HOH . D 4 HOH A 22 530 22 HOH HOH . D 4 HOH A 23 531 23 HOH HOH . D 4 HOH A 24 532 24 HOH HOH . D 4 HOH A 25 533 25 HOH HOH . D 4 HOH A 26 534 26 HOH HOH . D 4 HOH A 27 535 27 HOH HOH . D 4 HOH A 28 536 28 HOH HOH . D 4 HOH A 29 537 29 HOH HOH . D 4 HOH A 30 538 30 HOH HOH . D 4 HOH A 31 539 31 HOH HOH . D 4 HOH A 32 540 32 HOH HOH . D 4 HOH A 33 541 33 HOH HOH . D 4 HOH A 34 542 34 HOH HOH . D 4 HOH A 35 543 35 HOH HOH . D 4 HOH A 36 544 36 HOH HOH . D 4 HOH A 37 545 37 HOH HOH . D 4 HOH A 38 546 38 HOH HOH . D 4 HOH A 39 547 39 HOH HOH . D 4 HOH A 40 548 40 HOH HOH . D 4 HOH A 41 549 41 HOH HOH . D 4 HOH A 42 550 42 HOH HOH . D 4 HOH A 43 551 43 HOH HOH . D 4 HOH A 44 552 44 HOH HOH . D 4 HOH A 45 553 45 HOH HOH . D 4 HOH A 46 554 46 HOH HOH . D 4 HOH A 47 555 47 HOH HOH . D 4 HOH A 48 556 48 HOH HOH . D 4 HOH A 49 557 49 HOH HOH . D 4 HOH A 50 558 50 HOH HOH . D 4 HOH A 51 559 51 HOH HOH . D 4 HOH A 52 560 52 HOH HOH . D 4 HOH A 53 561 53 HOH HOH . D 4 HOH A 54 562 54 HOH HOH . D 4 HOH A 55 563 55 HOH HOH . D 4 HOH A 56 564 56 HOH HOH . D 4 HOH A 57 565 57 HOH HOH . D 4 HOH A 58 566 58 HOH HOH . D 4 HOH A 59 567 59 HOH HOH . D 4 HOH A 60 568 60 HOH HOH . D 4 HOH A 61 569 61 HOH HOH . D 4 HOH A 62 570 62 HOH HOH . D 4 HOH A 63 571 63 HOH HOH . D 4 HOH A 64 572 64 HOH HOH . D 4 HOH A 65 573 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 15.232 19.513 -10.416 1 25.11 ? CHA HEM 508 A 1 HETATM 2 C CHB HEM . . . B 2 16.177 22.084 -14.401 1 24.07 ? CHB HEM 508 A 1 HETATM 3 C CHC HEM . . . B 2 16.563 26.041 -11.626 1 26.08 ? CHC HEM 508 A 1 HETATM 4 C CHD HEM . . . B 2 15.529 23.509 -7.593 1 23.08 ? CHD HEM 508 A 1 HETATM 5 C C1A HEM . . . B 2 15.496 19.844 -11.726 1 26.39 ? C1A HEM 508 A 1 HETATM 6 C C2A HEM . . . B 2 15.474 18.928 -12.864 1 26.29 ? C2A HEM 508 A 1 HETATM 7 C C3A HEM . . . B 2 15.738 19.65 -13.949 1 26.04 ? C3A HEM 508 A 1 HETATM 8 C C4A HEM . . . B 2 15.884 21.029 -13.549 1 25.36 ? C4A HEM 508 A 1 HETATM 9 C CMA HEM . . . B 2 15.849 19.121 -15.407 1 26.55 ? CMA HEM 508 A 1 HETATM 10 C CAA HEM . . . B 2 15.248 17.384 -12.804 1 27.81 ? CAA HEM 508 A 1 HETATM 11 C CBA HEM . . . B 2 13.732 17.135 -12.754 1 28.44 ? CBA HEM 508 A 1 HETATM 12 C CGA HEM . . . B 2 13.352 15.731 -13.167 1 27.62 ? CGA HEM 508 A 1 HETATM 13 O O1A HEM . . . B 2 12.299 15.579 -13.839 1 27.84 ? O1A HEM 508 A 1 HETATM 14 O O2A HEM . . . B 2 14.051 14.752 -12.831 1 24.58 ? O2A HEM 508 A 1 HETATM 15 C C1B HEM . . . B 2 16.394 23.369 -14.003 1 25.08 ? C1B HEM 508 A 1 HETATM 16 C C2B HEM . . . B 2 16.664 24.486 -14.9 1 25.44 ? C2B HEM 508 A 1 HETATM 17 C C3B HEM . . . B 2 16.774 25.577 -14.148 1 27.03 ? C3B HEM 508 A 1 HETATM 18 C C4B HEM . . . B 2 16.566 25.212 -12.734 1 26.37 ? C4B HEM 508 A 1 HETATM 19 C CMB HEM . . . B 2 16.797 24.415 -16.448 1 24.71 ? CMB HEM 508 A 1 HETATM 20 C CAB HEM . . . B 2 17.065 26.966 -14.747 1 30.49 ? CAB HEM 508 A 1 HETATM 21 C CBB HEM . . . B 2 17.647 27.844 -13.958 1 33.47 ? CBB HEM 508 A 1 HETATM 22 C C1C HEM . . . B 2 16.288 25.719 -10.302 1 22.13 ? C1C HEM 508 A 1 HETATM 23 C C2C HEM . . . B 2 16.219 26.641 -9.192 1 21.45 ? C2C HEM 508 A 1 HETATM 24 C C3C HEM . . . B 2 15.94 25.967 -8.084 1 23.69 ? C3C HEM 508 A 1 HETATM 25 C C4C HEM . . . B 2 15.803 24.561 -8.44 1 25.65 ? C4C HEM 508 A 1 HETATM 26 C CMC HEM . . . B 2 16.433 28.169 -9.206 1 19.92 ? CMC HEM 508 A 1 HETATM 27 C CAC HEM . . . B 2 15.8 26.652 -6.7 1 23.54 ? CAC HEM 508 A 1 HETATM 28 C CBC HEM . . . B 2 15.224 26.036 -5.682 1 25.72 ? CBC HEM 508 A 1 HETATM 29 C C1D HEM . . . B 2 15.434 22.19 -7.973 1 27.4 ? C1D HEM 508 A 1 HETATM 30 C C2D HEM . . . B 2 15.332 21.063 -7.055 1 27.59 ? C2D HEM 508 A 1 HETATM 31 C C3D HEM . . . B 2 15.235 19.841 -7.942 1 27.44 ? C3D HEM 508 A 1 HETATM 32 C C4D HEM . . . B 2 15.28 20.343 -9.301 1 27.28 ? C4D HEM 508 A 1 HETATM 33 C CMD HEM . . . B 2 15.339 21.106 -5.519 1 27.59 ? CMD HEM 508 A 1 HETATM 34 C CAD HEM . . . B 2 15.096 18.376 -7.495 1 26.91 ? CAD HEM 508 A 1 HETATM 35 C CBD HEM . . . B 2 13.638 18.197 -7.067 1 24.41 ? CBD HEM 508 A 1 HETATM 36 C CGD HEM . . . B 2 13.359 16.814 -6.496 1 24.82 ? CGD HEM 508 A 1 HETATM 37 O O1D HEM . . . B 2 12.244 16.594 -5.946 1 21.41 ? O1D HEM 508 A 1 HETATM 38 O O2D HEM . . . B 2 14.232 15.911 -6.597 1 25.06 ? O2D HEM 508 A 1 HETATM 39 N NA HEM . . . B 2 15.691 21.118 -12.192 1 23.73 ? NA HEM 508 A 1 HETATM 40 N NB HEM . . . B 2 16.296 23.85 -12.685 1 25.18 ? NB HEM 508 A 1 HETATM 41 N NC HEM . . . B 2 15.972 24.462 -9.816 1 23.93 ? NC HEM 508 A 1 HETATM 42 N ND HEM . . . B 2 15.358 21.734 -9.281 1 24.73 ? ND HEM 508 A 1 HETATM 43 FE FE HEM . . . B 2 15.743 22.826 -10.997 1 24.98 ? FE HEM 508 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #