data_3UA5 # _model_server_result.job_id wDnKIDcS7ZkuDvRBmqdjUA _model_server_result.datetime_utc '2024-11-22 05:16:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ua5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3UA5 # _exptl.entry_id 3UA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UA5 _cell.length_a 58 _cell.length_b 78.3 _cell.length_c 247.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,C,D,E,I 3 1 B,F,G,H,J 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 29 39.15 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D NAD 06X . A 06X 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 B SG CYS 417 B CYS 436 1_555 F FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc4 F FE HEM . B HEM 500 1_555 G NAD 06X . B 06X 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 183 n n CHA C4D HEM doub 184 n n CHA HHA HEM sing 185 n n CHB C4A HEM sing 186 n n CHB C1B HEM doub 187 n n CHB HHB HEM sing 188 n n CHC C4B HEM sing 189 n n CHC C1C HEM doub 190 n n CHC HHC HEM sing 191 n n CHD C4C HEM doub 192 n n CHD C1D HEM sing 193 n n CHD HHD HEM sing 194 n n C1A C2A HEM doub 195 n y C1A NA HEM sing 196 n y C2A C3A HEM sing 197 n y C2A CAA HEM sing 198 n n C3A C4A HEM doub 199 n y C3A CMA HEM sing 200 n n C4A NA HEM sing 201 n y CMA HMA HEM sing 202 n n CMA HMAA HEM sing 203 n n CMA HMAB HEM sing 204 n n CAA CBA HEM sing 205 n n CAA HAA HEM sing 206 n n CAA HAAA HEM sing 207 n n CBA CGA HEM sing 208 n n CBA HBA HEM sing 209 n n CBA HBAA HEM sing 210 n n CGA O1A HEM doub 211 n n CGA O2A HEM sing 212 n n C1B C2B HEM sing 213 n n C1B NB HEM sing 214 n n C2B C3B HEM doub 215 n n C2B CMB HEM sing 216 n n C3B C4B HEM sing 217 n n C3B CAB HEM sing 218 n n C4B NB HEM doub 219 n n CMB HMB HEM sing 220 n n CMB HMBA HEM sing 221 n n CMB HMBB HEM sing 222 n n CAB CBB HEM doub 223 n n CAB HAB HEM sing 224 n n CBB HBB HEM sing 225 n n CBB HBBA HEM sing 226 n n C1C C2C HEM sing 227 n y C1C NC HEM sing 228 n y C2C C3C HEM doub 229 n y C2C CMC HEM sing 230 n n C3C C4C HEM sing 231 n y C3C CAC HEM sing 232 n n C4C NC HEM sing 233 n y CMC HMC HEM sing 234 n n CMC HMCA HEM sing 235 n n CMC HMCB HEM sing 236 n n CAC CBC HEM doub 237 n n CAC HAC HEM sing 238 n n CBC HBC HEM sing 239 n n CBC HBCA HEM sing 240 n n C1D C2D HEM sing 241 n n C1D ND HEM doub 242 n n C2D C3D HEM doub 243 n n C2D CMD HEM sing 244 n n C3D C4D HEM sing 245 n n C3D CAD HEM sing 246 n n C4D ND HEM sing 247 n n CMD HMD HEM sing 248 n n CMD HMDA HEM sing 249 n n CMD HMDB HEM sing 250 n n CAD CBD HEM sing 251 n n CAD HAD HEM sing 252 n n CAD HADA HEM sing 253 n n CBD CGD HEM sing 254 n n CBD HBD HEM sing 255 n n CBD HBDA HEM sing 256 n n CGD O1D HEM doub 257 n n CGD O2D HEM sing 258 n n O2A H2A HEM sing 259 n n O2D H2D HEM sing 260 n n FE NA HEM sing 261 n n FE NB HEM sing 262 n n FE NC HEM sing 263 n n FE ND HEM sing 264 n n # _atom_sites.entry_id 3UA5 _atom_sites.fract_transf_matrix[1][1] 0.017241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 06X A 1 501 501 06X 06X . E 3 06X A 1 502 502 06X 06X . F 2 HEM B 1 500 500 HEM HEM . G 3 06X B 1 501 501 06X 06X . H 3 06X B 1 502 502 06X 06X . I 4 HOH A 1 601 3 HOH HOH . I 4 HOH A 2 602 4 HOH HOH . I 4 HOH A 3 603 6 HOH HOH . I 4 HOH A 4 604 7 HOH HOH . I 4 HOH A 5 605 10 HOH HOH . I 4 HOH A 6 606 11 HOH HOH . I 4 HOH A 7 607 13 HOH HOH . I 4 HOH A 8 608 15 HOH HOH . I 4 HOH A 9 609 496 HOH HOH . I 4 HOH A 10 610 497 HOH HOH . I 4 HOH A 11 611 498 HOH HOH . I 4 HOH A 12 612 499 HOH HOH . I 4 HOH A 13 613 503 HOH HOH . I 4 HOH A 14 614 504 HOH HOH . I 4 HOH A 15 615 505 HOH HOH . I 4 HOH A 16 616 506 HOH HOH . I 4 HOH A 17 617 507 HOH HOH . I 4 HOH A 18 618 508 HOH HOH . I 4 HOH A 19 619 509 HOH HOH . I 4 HOH A 20 620 510 HOH HOH . I 4 HOH A 21 621 511 HOH HOH . I 4 HOH A 22 622 512 HOH HOH . I 4 HOH A 23 623 513 HOH HOH . I 4 HOH A 24 624 514 HOH HOH . I 4 HOH A 25 625 515 HOH HOH . I 4 HOH A 26 626 516 HOH HOH . I 4 HOH A 27 627 517 HOH HOH . I 4 HOH A 28 628 518 HOH HOH . I 4 HOH A 29 629 519 HOH HOH . I 4 HOH A 30 630 520 HOH HOH . I 4 HOH A 31 631 521 HOH HOH . I 4 HOH A 32 632 522 HOH HOH . I 4 HOH A 33 633 523 HOH HOH . I 4 HOH A 34 634 524 HOH HOH . I 4 HOH A 35 635 525 HOH HOH . I 4 HOH A 36 636 526 HOH HOH . I 4 HOH A 37 637 527 HOH HOH . I 4 HOH A 38 638 528 HOH HOH . I 4 HOH A 39 639 529 HOH HOH . I 4 HOH A 40 640 530 HOH HOH . J 4 HOH B 1 601 16 HOH HOH . J 4 HOH B 2 602 17 HOH HOH . J 4 HOH B 3 603 18 HOH HOH . J 4 HOH B 4 604 19 HOH HOH . J 4 HOH B 5 605 496 HOH HOH . J 4 HOH B 6 606 497 HOH HOH . J 4 HOH B 7 607 498 HOH HOH . J 4 HOH B 8 608 499 HOH HOH . J 4 HOH B 9 609 503 HOH HOH . J 4 HOH B 10 610 504 HOH HOH . J 4 HOH B 11 611 505 HOH HOH . J 4 HOH B 12 612 506 HOH HOH . J 4 HOH B 13 613 507 HOH HOH . J 4 HOH B 14 614 508 HOH HOH . J 4 HOH B 15 615 509 HOH HOH . J 4 HOH B 16 616 510 HOH HOH . J 4 HOH B 17 617 511 HOH HOH . J 4 HOH B 18 618 512 HOH HOH . J 4 HOH B 19 619 513 HOH HOH . J 4 HOH B 20 620 514 HOH HOH . J 4 HOH B 21 621 515 HOH HOH . J 4 HOH B 22 622 516 HOH HOH . J 4 HOH B 23 623 517 HOH HOH . J 4 HOH B 24 624 518 HOH HOH . J 4 HOH B 25 625 519 HOH HOH . J 4 HOH B 26 626 520 HOH HOH . J 4 HOH B 27 627 521 HOH HOH . J 4 HOH B 28 628 522 HOH HOH . J 4 HOH B 29 629 523 HOH HOH . J 4 HOH B 30 630 524 HOH HOH . J 4 HOH B 31 631 525 HOH HOH . J 4 HOH B 32 632 526 HOH HOH . J 4 HOH B 33 633 527 HOH HOH . J 4 HOH B 34 634 528 HOH HOH . J 4 HOH B 35 635 529 HOH HOH . J 4 HOH B 36 636 530 HOH HOH . J 4 HOH B 37 637 531 HOH HOH . J 4 HOH B 38 638 532 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 11.533 -0.517 45.062 1 39.68 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . C 2 15.653 -1.04 47.319 1 38.65 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . C 2 16.595 -4.892 44.817 1 41.21 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . C 2 12.38 -4.562 42.807 1 42.75 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . C 2 12.637 -0.36 45.796 1 39.37 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . C 2 12.866 0.84 46.507 1 38.45 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . C 2 13.992 0.706 47.135 1 39.13 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . C 2 14.495 -0.588 46.842 1 39.01 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . C 2 14.642 1.758 48.018 1 39.46 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . C 2 11.944 2.055 46.508 1 36.51 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . C 2 10.922 1.973 47.614 1 34.06 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . C 2 10.509 3.337 47.97 1 33.11 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . C 2 9.818 3.912 47.164 1 34.84 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . C 2 10.857 3.836 49.039 1 31.73 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . C 2 16.22 -2.121 46.765 1 38.62 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . C 2 17.52 -2.564 47.102 1 38.26 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . C 2 17.767 -3.617 46.405 1 39.4 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . C 2 16.633 -3.856 45.629 1 39.04 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . C 2 18.458 -1.904 48.096 1 36.66 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . C 2 19.018 -4.498 46.352 1 39.86 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . C 2 19.907 -4.564 47.333 1 39.46 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . C 2 15.497 -5.075 44.112 1 42.03 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . C 2 15.355 -6.199 43.268 1 43.18 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . C 2 14.205 -6.099 42.73 1 44.29 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . C 2 13.601 -4.908 43.218 1 43.62 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . C 2 16.344 -7.326 43.007 1 43.87 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . C 2 13.632 -7.077 41.712 1 44.87 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . C 2 12.577 -7.807 42.006 1 45.84 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . C 2 11.81 -3.456 43.243 1 41.47 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . C 2 10.527 -3.088 42.832 1 41.96 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . C 2 10.236 -1.824 43.546 1 41.39 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . C 2 11.398 -1.588 44.293 1 40.72 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . C 2 9.617 -3.832 41.862 1 45.11 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . C 2 8.975 -0.978 43.445 1 41 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . C 2 7.813 -1.796 43.93 1 41.57 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . C 2 6.868 -0.754 44.329 1 42.41 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . C 2 5.765 -1.024 44.748 1 42.93 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . C 2 7.252 0.38 44.179 1 43.22 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . C 2 13.656 -1.276 45.986 1 39.3 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . C 2 15.644 -2.937 45.819 1 39.54 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . C 2 14.411 -4.235 44.111 1 41.17 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . C 2 12.35 -2.567 44.128 1 40.56 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . C 2 14.037 -2.617 45.085 1 40.35 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #