data_3UA5 # _model_server_result.job_id Np4Zp1DtPDj6R6WzAJN0MA _model_server_result.datetime_utc '2024-11-22 04:58:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ua5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 3UA5 # _exptl.entry_id 3UA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UA5 _cell.length_a 58 _cell.length_b 78.3 _cell.length_c 247.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,C,D,E,I 3 1 B,F,G,H,J 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 29 39.15 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D NAD 06X . A 06X 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 B SG CYS 417 B CYS 436 1_555 F FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc4 F FE HEM . B HEM 500 1_555 G NAD 06X . B 06X 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 183 n n CHA C4D HEM doub 184 n n CHA HHA HEM sing 185 n n CHB C4A HEM sing 186 n n CHB C1B HEM doub 187 n n CHB HHB HEM sing 188 n n CHC C4B HEM sing 189 n n CHC C1C HEM doub 190 n n CHC HHC HEM sing 191 n n CHD C4C HEM doub 192 n n CHD C1D HEM sing 193 n n CHD HHD HEM sing 194 n n C1A C2A HEM doub 195 n y C1A NA HEM sing 196 n y C2A C3A HEM sing 197 n y C2A CAA HEM sing 198 n n C3A C4A HEM doub 199 n y C3A CMA HEM sing 200 n n C4A NA HEM sing 201 n y CMA HMA HEM sing 202 n n CMA HMAA HEM sing 203 n n CMA HMAB HEM sing 204 n n CAA CBA HEM sing 205 n n CAA HAA HEM sing 206 n n CAA HAAA HEM sing 207 n n CBA CGA HEM sing 208 n n CBA HBA HEM sing 209 n n CBA HBAA HEM sing 210 n n CGA O1A HEM doub 211 n n CGA O2A HEM sing 212 n n C1B C2B HEM sing 213 n n C1B NB HEM sing 214 n n C2B C3B HEM doub 215 n n C2B CMB HEM sing 216 n n C3B C4B HEM sing 217 n n C3B CAB HEM sing 218 n n C4B NB HEM doub 219 n n CMB HMB HEM sing 220 n n CMB HMBA HEM sing 221 n n CMB HMBB HEM sing 222 n n CAB CBB HEM doub 223 n n CAB HAB HEM sing 224 n n CBB HBB HEM sing 225 n n CBB HBBA HEM sing 226 n n C1C C2C HEM sing 227 n y C1C NC HEM sing 228 n y C2C C3C HEM doub 229 n y C2C CMC HEM sing 230 n n C3C C4C HEM sing 231 n y C3C CAC HEM sing 232 n n C4C NC HEM sing 233 n y CMC HMC HEM sing 234 n n CMC HMCA HEM sing 235 n n CMC HMCB HEM sing 236 n n CAC CBC HEM doub 237 n n CAC HAC HEM sing 238 n n CBC HBC HEM sing 239 n n CBC HBCA HEM sing 240 n n C1D C2D HEM sing 241 n n C1D ND HEM doub 242 n n C2D C3D HEM doub 243 n n C2D CMD HEM sing 244 n n C3D C4D HEM sing 245 n n C3D CAD HEM sing 246 n n C4D ND HEM sing 247 n n CMD HMD HEM sing 248 n n CMD HMDA HEM sing 249 n n CMD HMDB HEM sing 250 n n CAD CBD HEM sing 251 n n CAD HAD HEM sing 252 n n CAD HADA HEM sing 253 n n CBD CGD HEM sing 254 n n CBD HBD HEM sing 255 n n CBD HBDA HEM sing 256 n n CGD O1D HEM doub 257 n n CGD O2D HEM sing 258 n n O2A H2A HEM sing 259 n n O2D H2D HEM sing 260 n n FE NA HEM sing 261 n n FE NB HEM sing 262 n n FE NC HEM sing 263 n n FE ND HEM sing 264 n n # _atom_sites.entry_id 3UA5 _atom_sites.fract_transf_matrix[1][1] 0.017241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 06X A 1 501 501 06X 06X . E 3 06X A 1 502 502 06X 06X . F 2 HEM B 1 500 500 HEM HEM . G 3 06X B 1 501 501 06X 06X . H 3 06X B 1 502 502 06X 06X . I 4 HOH A 1 601 3 HOH HOH . I 4 HOH A 2 602 4 HOH HOH . I 4 HOH A 3 603 6 HOH HOH . I 4 HOH A 4 604 7 HOH HOH . I 4 HOH A 5 605 10 HOH HOH . I 4 HOH A 6 606 11 HOH HOH . I 4 HOH A 7 607 13 HOH HOH . I 4 HOH A 8 608 15 HOH HOH . I 4 HOH A 9 609 496 HOH HOH . I 4 HOH A 10 610 497 HOH HOH . I 4 HOH A 11 611 498 HOH HOH . I 4 HOH A 12 612 499 HOH HOH . I 4 HOH A 13 613 503 HOH HOH . I 4 HOH A 14 614 504 HOH HOH . I 4 HOH A 15 615 505 HOH HOH . I 4 HOH A 16 616 506 HOH HOH . I 4 HOH A 17 617 507 HOH HOH . I 4 HOH A 18 618 508 HOH HOH . I 4 HOH A 19 619 509 HOH HOH . I 4 HOH A 20 620 510 HOH HOH . I 4 HOH A 21 621 511 HOH HOH . I 4 HOH A 22 622 512 HOH HOH . I 4 HOH A 23 623 513 HOH HOH . I 4 HOH A 24 624 514 HOH HOH . I 4 HOH A 25 625 515 HOH HOH . I 4 HOH A 26 626 516 HOH HOH . I 4 HOH A 27 627 517 HOH HOH . I 4 HOH A 28 628 518 HOH HOH . I 4 HOH A 29 629 519 HOH HOH . I 4 HOH A 30 630 520 HOH HOH . I 4 HOH A 31 631 521 HOH HOH . I 4 HOH A 32 632 522 HOH HOH . I 4 HOH A 33 633 523 HOH HOH . I 4 HOH A 34 634 524 HOH HOH . I 4 HOH A 35 635 525 HOH HOH . I 4 HOH A 36 636 526 HOH HOH . I 4 HOH A 37 637 527 HOH HOH . I 4 HOH A 38 638 528 HOH HOH . I 4 HOH A 39 639 529 HOH HOH . I 4 HOH A 40 640 530 HOH HOH . J 4 HOH B 1 601 16 HOH HOH . J 4 HOH B 2 602 17 HOH HOH . J 4 HOH B 3 603 18 HOH HOH . J 4 HOH B 4 604 19 HOH HOH . J 4 HOH B 5 605 496 HOH HOH . J 4 HOH B 6 606 497 HOH HOH . J 4 HOH B 7 607 498 HOH HOH . J 4 HOH B 8 608 499 HOH HOH . J 4 HOH B 9 609 503 HOH HOH . J 4 HOH B 10 610 504 HOH HOH . J 4 HOH B 11 611 505 HOH HOH . J 4 HOH B 12 612 506 HOH HOH . J 4 HOH B 13 613 507 HOH HOH . J 4 HOH B 14 614 508 HOH HOH . J 4 HOH B 15 615 509 HOH HOH . J 4 HOH B 16 616 510 HOH HOH . J 4 HOH B 17 617 511 HOH HOH . J 4 HOH B 18 618 512 HOH HOH . J 4 HOH B 19 619 513 HOH HOH . J 4 HOH B 20 620 514 HOH HOH . J 4 HOH B 21 621 515 HOH HOH . J 4 HOH B 22 622 516 HOH HOH . J 4 HOH B 23 623 517 HOH HOH . J 4 HOH B 24 624 518 HOH HOH . J 4 HOH B 25 625 519 HOH HOH . J 4 HOH B 26 626 520 HOH HOH . J 4 HOH B 27 627 521 HOH HOH . J 4 HOH B 28 628 522 HOH HOH . J 4 HOH B 29 629 523 HOH HOH . J 4 HOH B 30 630 524 HOH HOH . J 4 HOH B 31 631 525 HOH HOH . J 4 HOH B 32 632 526 HOH HOH . J 4 HOH B 33 633 527 HOH HOH . J 4 HOH B 34 634 528 HOH HOH . J 4 HOH B 35 635 529 HOH HOH . J 4 HOH B 36 636 530 HOH HOH . J 4 HOH B 37 637 531 HOH HOH . J 4 HOH B 38 638 532 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . F 2 2.082 -1.862 -5.619 1 37.77 ? CHA HEM 500 B 1 HETATM 2 C CHB HEM . . . F 2 -1.951 -3.782 -4.333 1 36.91 ? CHB HEM 500 B 1 HETATM 3 C CHC HEM . . . F 2 -1.48 -1.545 -0.243 1 38.7 ? CHC HEM 500 B 1 HETATM 4 C CHD HEM . . . F 2 2.665 0.162 -1.422 1 37.6 ? CHD HEM 500 B 1 HETATM 5 C C1A HEM . . . F 2 0.95 -2.551 -5.582 1 38 ? C1A HEM 500 B 1 HETATM 6 C C2A HEM . . . F 2 0.502 -3.318 -6.688 1 38.1 ? C2A HEM 500 B 1 HETATM 7 C C3A HEM . . . F 2 -0.631 -3.85 -6.346 1 37.49 ? C3A HEM 500 B 1 HETATM 8 C C4A HEM . . . F 2 -0.878 -3.444 -5.013 1 36.99 ? C4A HEM 500 B 1 HETATM 9 C CMA HEM . . . F 2 -1.516 -4.759 -7.197 1 36.03 ? CMA HEM 500 B 1 HETATM 10 C CAA HEM . . . F 2 1.216 -3.438 -8.029 1 36.97 ? CAA HEM 500 B 1 HETATM 11 C CBA HEM . . . F 2 2.092 -4.654 -8.078 1 39.08 ? CBA HEM 500 B 1 HETATM 12 C CGA HEM . . . F 2 2.423 -4.873 -9.505 1 40.74 ? CGA HEM 500 B 1 HETATM 13 O O1A HEM . . . F 2 3.18 -4.102 -10.086 1 39.77 ? O1A HEM 500 B 1 HETATM 14 O O2A HEM . . . F 2 1.912 -5.843 -10.071 1 42.16 ? O2A HEM 500 B 1 HETATM 15 C C1B HEM . . . F 2 -2.087 -3.259 -3.117 1 37.36 ? C1B HEM 500 B 1 HETATM 16 C C2B HEM . . . F 2 -3.222 -3.588 -2.335 1 38.17 ? C2B HEM 500 B 1 HETATM 17 C C3B HEM . . . F 2 -3.082 -2.975 -1.225 1 39.58 ? C3B HEM 500 B 1 HETATM 18 C C4B HEM . . . F 2 -1.867 -2.252 -1.286 1 38.53 ? C4B HEM 500 B 1 HETATM 19 C CMB HEM . . . F 2 -4.409 -4.475 -2.688 1 35.65 ? CMB HEM 500 B 1 HETATM 20 C CAB HEM . . . F 2 -4.087 -3.028 -0.082 1 40.08 ? CAB HEM 500 B 1 HETATM 21 C CBB HEM . . . F 2 -5.296 -3.493 -0.35 1 40.49 ? CBB HEM 500 B 1 HETATM 22 C C1C HEM . . . F 2 -0.308 -0.951 -0.296 1 38.09 ? C1C HEM 500 B 1 HETATM 23 C C2C HEM . . . F 2 0.153 -0.173 0.794 1 37.89 ? C2C HEM 500 B 1 HETATM 24 C C3C HEM . . . F 2 1.287 0.294 0.447 1 37.28 ? C3C HEM 500 B 1 HETATM 25 C C4C HEM . . . F 2 1.533 -0.184 -0.848 1 36.88 ? C4C HEM 500 B 1 HETATM 26 C CMC HEM . . . F 2 -0.565 0.05 2.109 1 37.24 ? CMC HEM 500 B 1 HETATM 27 C CAC HEM . . . F 2 2.245 1.185 1.221 1 38.08 ? CAC HEM 500 B 1 HETATM 28 C CBC HEM . . . F 2 2.108 1.433 2.516 1 36.9 ? CBC HEM 500 B 1 HETATM 29 C C1D HEM . . . F 2 2.828 -0.244 -2.656 1 38.09 ? C1D HEM 500 B 1 HETATM 30 C C2D HEM . . . F 2 4.011 0.065 -3.339 1 38.32 ? C2D HEM 500 B 1 HETATM 31 C C3D HEM . . . F 2 3.818 -0.582 -4.656 1 38.04 ? C3D HEM 500 B 1 HETATM 32 C C4D HEM . . . F 2 2.545 -1.18 -4.577 1 37.59 ? C4D HEM 500 B 1 HETATM 33 C CMD HEM . . . F 2 5.202 0.879 -2.826 1 37.32 ? CMD HEM 500 B 1 HETATM 34 C CAD HEM . . . F 2 4.762 -0.588 -5.851 1 39.13 ? CAD HEM 500 B 1 HETATM 35 C CBD HEM . . . F 2 6.092 -1.175 -5.482 1 40.46 ? CBD HEM 500 B 1 HETATM 36 C CGD HEM . . . F 2 6.712 -1.488 -6.772 1 40.89 ? CGD HEM 500 B 1 HETATM 37 O O1D HEM . . . F 2 7.814 -2.022 -6.787 1 38.98 ? O1D HEM 500 B 1 HETATM 38 O O2D HEM . . . F 2 6.068 -1.172 -7.771 1 41.27 ? O2D HEM 500 B 1 HETATM 39 N NA HEM . . . F 2 0.089 -2.607 -4.517 1 37.34 ? NA HEM 500 B 1 HETATM 40 N NB HEM . . . F 2 -1.214 -2.406 -2.461 1 36.39 ? NB HEM 500 B 1 HETATM 41 N NC HEM . . . F 2 0.535 -0.981 -1.361 1 36.7 ? NC HEM 500 B 1 HETATM 42 N ND HEM . . . F 2 1.922 -1.001 -3.368 1 37.4 ? ND HEM 500 B 1 HETATM 43 FE FE HEM . . . F 2 0.394 -1.812 -2.824 1 38.11 ? FE HEM 500 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #