data_3UA5 # _model_server_result.job_id 9MzRi4mAaDf2M2dkRZ4aXQ _model_server_result.datetime_utc '2024-11-04 22:45:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ua5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3UA5 # _exptl.entry_id 3UA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.876 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Amlodipine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UA5 _cell.length_a 58 _cell.length_b 78.3 _cell.length_c 247.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,C,D,E,I 3 1 B,F,G,H,J 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 29 39.15 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D NAD 06X . A 06X 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 B SG CYS 417 B CYS 436 1_555 F FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc4 F FE HEM . B HEM 500 1_555 G NAD 06X . B 06X 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'C20 H25 Cl N2 O5' _chem_comp.formula_weight 408.876 _chem_comp.id 06X _chem_comp.mon_nstd_flag . _chem_comp.name Amlodipine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'O3-ethyl O5-methyl 2-(2-azanylethoxymethyl)-4-(2-chlorophenyl)-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB OAQ 06X sing 1 n n OAQ CAU 06X sing 2 n n OAE CAU 06X doub 3 n n CAU CAX 06X sing 4 n n CAC CAT 06X sing 5 n n CAI CAH 06X doub 6 n y CAI CAK 06X sing 7 n y CAH CAJ 06X sing 8 n y CAK CBA 06X doub 9 n y CAX CAT 06X doub 10 n n CAX CBB 06X sing 11 n n CAT NAP 06X sing 12 n n CAJ CAZ 06X doub 13 n y CBA CAZ 06X sing 14 n y CBA CBB 06X sing 15 n n CAZ CLAG 06X sing 16 n n CBB CAY 06X sing 17 n n NAP CAW 06X sing 18 n n CAW CAY 06X doub 19 n n CAW CAO 06X sing 20 n n CAY CAV 06X sing 21 n n CAN CAM 06X sing 22 n n CAN OAR 06X sing 23 n n CAM NAD 06X sing 24 n n OAR CAO 06X sing 25 n n OAS CAV 06X sing 26 n n OAS CAL 06X sing 27 n n CAV OAF 06X doub 28 n n CAA CAL 06X sing 29 n n CAJ H1 06X sing 30 n n CAH H2 06X sing 31 n n CAI H3 06X sing 32 n n CAK H4 06X sing 33 n n CAL H5 06X sing 34 n n CAL H6 06X sing 35 n n CAA H7 06X sing 36 n n CAA H8 06X sing 37 n n CAA H9 06X sing 38 n n CAB H10 06X sing 39 n n CAB H11 06X sing 40 n n CAB H12 06X sing 41 n n CAC H13 06X sing 42 n n CAC H14 06X sing 43 n n CAC H15 06X sing 44 n n CAO H16 06X sing 45 n n CAO H17 06X sing 46 n n CAN H18 06X sing 47 n n CAN H19 06X sing 48 n n CAM H20 06X sing 49 n n CAM H21 06X sing 50 n n NAD H22 06X sing 51 n n NAD H23 06X sing 52 n n CBB H25 06X sing 53 n n NAP H26 06X sing 54 n n # _atom_sites.entry_id 3UA5 _atom_sites.fract_transf_matrix[1][1] 0.017241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 06X A 1 501 501 06X 06X . E 3 06X A 1 502 502 06X 06X . F 2 HEM B 1 500 500 HEM HEM . G 3 06X B 1 501 501 06X 06X . H 3 06X B 1 502 502 06X 06X . I 4 HOH A 1 601 3 HOH HOH . I 4 HOH A 2 602 4 HOH HOH . I 4 HOH A 3 603 6 HOH HOH . I 4 HOH A 4 604 7 HOH HOH . I 4 HOH A 5 605 10 HOH HOH . I 4 HOH A 6 606 11 HOH HOH . I 4 HOH A 7 607 13 HOH HOH . I 4 HOH A 8 608 15 HOH HOH . I 4 HOH A 9 609 496 HOH HOH . I 4 HOH A 10 610 497 HOH HOH . I 4 HOH A 11 611 498 HOH HOH . I 4 HOH A 12 612 499 HOH HOH . I 4 HOH A 13 613 503 HOH HOH . I 4 HOH A 14 614 504 HOH HOH . I 4 HOH A 15 615 505 HOH HOH . I 4 HOH A 16 616 506 HOH HOH . I 4 HOH A 17 617 507 HOH HOH . I 4 HOH A 18 618 508 HOH HOH . I 4 HOH A 19 619 509 HOH HOH . I 4 HOH A 20 620 510 HOH HOH . I 4 HOH A 21 621 511 HOH HOH . I 4 HOH A 22 622 512 HOH HOH . I 4 HOH A 23 623 513 HOH HOH . I 4 HOH A 24 624 514 HOH HOH . I 4 HOH A 25 625 515 HOH HOH . I 4 HOH A 26 626 516 HOH HOH . I 4 HOH A 27 627 517 HOH HOH . I 4 HOH A 28 628 518 HOH HOH . I 4 HOH A 29 629 519 HOH HOH . I 4 HOH A 30 630 520 HOH HOH . I 4 HOH A 31 631 521 HOH HOH . I 4 HOH A 32 632 522 HOH HOH . I 4 HOH A 33 633 523 HOH HOH . I 4 HOH A 34 634 524 HOH HOH . I 4 HOH A 35 635 525 HOH HOH . I 4 HOH A 36 636 526 HOH HOH . I 4 HOH A 37 637 527 HOH HOH . I 4 HOH A 38 638 528 HOH HOH . I 4 HOH A 39 639 529 HOH HOH . I 4 HOH A 40 640 530 HOH HOH . J 4 HOH B 1 601 16 HOH HOH . J 4 HOH B 2 602 17 HOH HOH . J 4 HOH B 3 603 18 HOH HOH . J 4 HOH B 4 604 19 HOH HOH . J 4 HOH B 5 605 496 HOH HOH . J 4 HOH B 6 606 497 HOH HOH . J 4 HOH B 7 607 498 HOH HOH . J 4 HOH B 8 608 499 HOH HOH . J 4 HOH B 9 609 503 HOH HOH . J 4 HOH B 10 610 504 HOH HOH . J 4 HOH B 11 611 505 HOH HOH . J 4 HOH B 12 612 506 HOH HOH . J 4 HOH B 13 613 507 HOH HOH . J 4 HOH B 14 614 508 HOH HOH . J 4 HOH B 15 615 509 HOH HOH . J 4 HOH B 16 616 510 HOH HOH . J 4 HOH B 17 617 511 HOH HOH . J 4 HOH B 18 618 512 HOH HOH . J 4 HOH B 19 619 513 HOH HOH . J 4 HOH B 20 620 514 HOH HOH . J 4 HOH B 21 621 515 HOH HOH . J 4 HOH B 22 622 516 HOH HOH . J 4 HOH B 23 623 517 HOH HOH . J 4 HOH B 24 624 518 HOH HOH . J 4 HOH B 25 625 519 HOH HOH . J 4 HOH B 26 626 520 HOH HOH . J 4 HOH B 27 627 521 HOH HOH . J 4 HOH B 28 628 522 HOH HOH . J 4 HOH B 29 629 523 HOH HOH . J 4 HOH B 30 630 524 HOH HOH . J 4 HOH B 31 631 525 HOH HOH . J 4 HOH B 32 632 526 HOH HOH . J 4 HOH B 33 633 527 HOH HOH . J 4 HOH B 34 634 528 HOH HOH . J 4 HOH B 35 635 529 HOH HOH . J 4 HOH B 36 636 530 HOH HOH . J 4 HOH B 37 637 531 HOH HOH . J 4 HOH B 38 638 532 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CLAG 06X . . . D 3 16.514 6.106 40.969 1 56.33 ? CLAG 06X 501 A 1 HETATM 2 C CAZ 06X . . . D 3 16.535 5.709 39.291 1 51.56 ? CAZ 06X 501 A 1 HETATM 3 C CAJ 06X . . . D 3 15.94 6.562 38.368 1 53.39 ? CAJ 06X 501 A 1 HETATM 4 C CAH 06X . . . D 3 15.956 6.242 37.016 1 55.32 ? CAH 06X 501 A 1 HETATM 5 C CAI 06X . . . D 3 16.566 5.07 36.585 1 52.46 ? CAI 06X 501 A 1 HETATM 6 C CAK 06X . . . D 3 17.161 4.217 37.508 1 51.54 ? CAK 06X 501 A 1 HETATM 7 C CBA 06X . . . D 3 17.145 4.537 38.861 1 49.79 ? CBA 06X 501 A 1 HETATM 8 C CBB 06X . . . D 3 17.74 3.685 39.783 1 47.79 ? CBB 06X 501 A 1 HETATM 9 C CAY 06X . . . D 3 17.147 2.423 39.741 1 46.64 ? CAY 06X 501 A 1 HETATM 10 C CAV 06X . . . D 3 15.839 2.237 39.296 1 48.11 ? CAV 06X 501 A 1 HETATM 11 O OAF 06X . . . D 3 15.345 1.111 39.267 1 51.9 ? OAF 06X 501 A 1 HETATM 12 O OAS 06X . . . D 3 15.172 3.359 38.914 1 47.62 ? OAS 06X 501 A 1 HETATM 13 C CAL 06X . . . D 3 13.97 2.991 38.234 1 45.88 ? CAL 06X 501 A 1 HETATM 14 C CAA 06X . . . D 3 12.854 3.971 38.603 1 46.65 ? CAA 06X 501 A 1 HETATM 15 C CAX 06X . . . D 3 19.085 3.549 39.468 1 48.25 ? CAX 06X 501 A 1 HETATM 16 C CAU 06X . . . D 3 19.739 4.531 38.732 1 49.81 ? CAU 06X 501 A 1 HETATM 17 O OAE 06X . . . D 3 19.15 5.543 38.356 1 49.01 ? OAE 06X 501 A 1 HETATM 18 O OAQ 06X . . . D 3 21.051 4.28 38.481 1 53.6 ? OAQ 06X 501 A 1 HETATM 19 C CAB 06X . . . D 3 21.559 5.259 37.569 1 52.76 ? CAB 06X 501 A 1 HETATM 20 C CAT 06X . . . D 3 19.778 2.412 39.867 1 47.29 ? CAT 06X 501 A 1 HETATM 21 C CAC 06X . . . D 3 21.123 2.191 39.598 1 48.78 ? CAC 06X 501 A 1 HETATM 22 N NAP 06X . . . D 3 19.128 1.492 40.576 1 46.27 ? NAP 06X 501 A 1 HETATM 23 C CAW 06X . . . D 3 17.881 1.312 40.14 1 44.03 ? CAW 06X 501 A 1 HETATM 24 C CAO 06X . . . D 3 17.381 0.016 40.138 1 39.29 ? CAO 06X 501 A 1 HETATM 25 O OAR 06X . . . D 3 17.185 -0.423 41.486 1 33 ? OAR 06X 501 A 1 HETATM 26 C CAN 06X . . . D 3 16.091 0.293 42.066 1 33.93 ? CAN 06X 501 A 1 HETATM 27 C CAM 06X . . . D 3 14.887 -0.64 42.206 1 35.15 ? CAM 06X 501 A 1 HETATM 28 N NAD 06X . . . D 3 14.888 -1.308 43.515 1 32.67 ? NAD 06X 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #