data_3UAW # _model_server_result.job_id -nATpdVLzsEin6dh48aihw _model_server_result.datetime_utc '2024-11-13 08:19:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uaw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":236}' # _entry.id 3UAW # _exptl.entry_id 3UAW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UAW _cell.length_a 121 _cell.length_b 121 _cell.length_c 67.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 121 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 60.5 104.789074 0 4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+3/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 60.5 104.789074 100.65 5 'crystal symmetry operation' 11_656 -x+y+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 121 0 100.65 6 'crystal symmetry operation' 12_556 x,x-y,-z+3/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 100.65 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 3UAW _atom_sites.fract_transf_matrix[1][1] 0.008264 _atom_sites.fract_transf_matrix[1][2] 0.004771 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN A 1 236 1 ADN ADN . C 3 SO4 A 1 237 1 SO4 SO4 . D 3 SO4 A 1 238 2 SO4 SO4 . E 4 GOL A 1 239 1 GOL GOL . F 4 GOL A 1 240 2 GOL GOL . G 5 HOH A 1 241 1 HOH HOH . G 5 HOH A 2 242 2 HOH HOH . G 5 HOH A 3 243 3 HOH HOH . G 5 HOH A 4 244 4 HOH HOH . G 5 HOH A 5 245 5 HOH HOH . G 5 HOH A 6 246 6 HOH HOH . G 5 HOH A 7 247 7 HOH HOH . G 5 HOH A 8 248 8 HOH HOH . G 5 HOH A 9 249 9 HOH HOH . G 5 HOH A 10 250 10 HOH HOH . G 5 HOH A 11 251 11 HOH HOH . G 5 HOH A 12 252 12 HOH HOH . G 5 HOH A 13 253 13 HOH HOH . G 5 HOH A 14 254 14 HOH HOH . G 5 HOH A 15 255 15 HOH HOH . G 5 HOH A 16 256 16 HOH HOH . G 5 HOH A 17 257 17 HOH HOH . G 5 HOH A 18 258 18 HOH HOH . G 5 HOH A 19 259 19 HOH HOH . G 5 HOH A 20 260 20 HOH HOH . G 5 HOH A 21 261 21 HOH HOH . G 5 HOH A 22 262 22 HOH HOH . G 5 HOH A 23 263 23 HOH HOH . G 5 HOH A 24 264 24 HOH HOH . G 5 HOH A 25 265 25 HOH HOH . G 5 HOH A 26 266 26 HOH HOH . G 5 HOH A 27 267 27 HOH HOH . G 5 HOH A 28 268 28 HOH HOH . G 5 HOH A 29 269 29 HOH HOH . G 5 HOH A 30 270 30 HOH HOH . G 5 HOH A 31 271 31 HOH HOH . G 5 HOH A 32 272 32 HOH HOH . G 5 HOH A 33 273 33 HOH HOH . G 5 HOH A 34 274 34 HOH HOH . G 5 HOH A 35 275 35 HOH HOH . G 5 HOH A 36 276 36 HOH HOH . G 5 HOH A 37 277 37 HOH HOH . G 5 HOH A 38 278 38 HOH HOH . G 5 HOH A 39 279 39 HOH HOH . G 5 HOH A 40 280 40 HOH HOH . G 5 HOH A 41 281 41 HOH HOH . G 5 HOH A 42 282 42 HOH HOH . G 5 HOH A 43 283 43 HOH HOH . G 5 HOH A 44 284 44 HOH HOH . G 5 HOH A 45 285 45 HOH HOH . G 5 HOH A 46 286 46 HOH HOH . G 5 HOH A 47 287 47 HOH HOH . G 5 HOH A 48 288 48 HOH HOH . G 5 HOH A 49 289 49 HOH HOH . G 5 HOH A 50 290 50 HOH HOH . G 5 HOH A 51 291 51 HOH HOH . G 5 HOH A 52 292 52 HOH HOH . G 5 HOH A 53 293 53 HOH HOH . G 5 HOH A 54 294 54 HOH HOH . G 5 HOH A 55 295 55 HOH HOH . G 5 HOH A 56 296 56 HOH HOH . G 5 HOH A 57 297 57 HOH HOH . G 5 HOH A 58 298 58 HOH HOH . G 5 HOH A 59 299 59 HOH HOH . G 5 HOH A 60 300 60 HOH HOH . G 5 HOH A 61 301 61 HOH HOH . G 5 HOH A 62 302 62 HOH HOH . G 5 HOH A 63 303 63 HOH HOH . G 5 HOH A 64 304 64 HOH HOH . G 5 HOH A 65 305 65 HOH HOH . G 5 HOH A 66 306 66 HOH HOH . G 5 HOH A 67 307 67 HOH HOH . G 5 HOH A 68 308 68 HOH HOH . G 5 HOH A 69 309 69 HOH HOH . G 5 HOH A 70 310 70 HOH HOH . G 5 HOH A 71 311 71 HOH HOH . G 5 HOH A 72 312 72 HOH HOH . G 5 HOH A 73 313 73 HOH HOH . G 5 HOH A 74 314 74 HOH HOH . G 5 HOH A 75 315 75 HOH HOH . G 5 HOH A 76 316 76 HOH HOH . G 5 HOH A 77 317 77 HOH HOH . G 5 HOH A 78 318 78 HOH HOH . G 5 HOH A 79 319 79 HOH HOH . G 5 HOH A 80 320 80 HOH HOH . G 5 HOH A 81 321 81 HOH HOH . G 5 HOH A 82 322 82 HOH HOH . G 5 HOH A 83 323 83 HOH HOH . G 5 HOH A 84 324 84 HOH HOH . G 5 HOH A 85 325 85 HOH HOH . G 5 HOH A 86 326 86 HOH HOH . G 5 HOH A 87 327 87 HOH HOH . G 5 HOH A 88 328 88 HOH HOH . G 5 HOH A 89 329 89 HOH HOH . G 5 HOH A 90 330 90 HOH HOH . G 5 HOH A 91 331 91 HOH HOH . G 5 HOH A 92 332 92 HOH HOH . G 5 HOH A 93 333 93 HOH HOH . G 5 HOH A 94 334 94 HOH HOH . G 5 HOH A 95 335 95 HOH HOH . G 5 HOH A 96 336 96 HOH HOH . G 5 HOH A 97 337 97 HOH HOH . G 5 HOH A 98 338 98 HOH HOH . G 5 HOH A 99 339 99 HOH HOH . G 5 HOH A 100 340 100 HOH HOH . G 5 HOH A 101 341 101 HOH HOH . G 5 HOH A 102 342 102 HOH HOH . G 5 HOH A 103 343 103 HOH HOH . G 5 HOH A 104 344 104 HOH HOH . G 5 HOH A 105 345 105 HOH HOH . G 5 HOH A 106 346 106 HOH HOH . G 5 HOH A 107 347 107 HOH HOH . G 5 HOH A 108 348 108 HOH HOH . G 5 HOH A 109 349 109 HOH HOH . G 5 HOH A 110 350 110 HOH HOH . G 5 HOH A 111 351 111 HOH HOH . G 5 HOH A 112 352 112 HOH HOH . G 5 HOH A 113 353 113 HOH HOH . G 5 HOH A 114 354 114 HOH HOH . G 5 HOH A 115 355 115 HOH HOH . G 5 HOH A 116 356 116 HOH HOH . G 5 HOH A 117 357 117 HOH HOH . G 5 HOH A 118 358 118 HOH HOH . G 5 HOH A 119 359 119 HOH HOH . G 5 HOH A 120 360 120 HOH HOH . G 5 HOH A 121 361 121 HOH HOH . G 5 HOH A 122 362 122 HOH HOH . G 5 HOH A 123 363 123 HOH HOH . G 5 HOH A 124 364 124 HOH HOH . G 5 HOH A 125 365 125 HOH HOH . G 5 HOH A 126 366 126 HOH HOH . G 5 HOH A 127 367 127 HOH HOH . G 5 HOH A 128 368 128 HOH HOH . G 5 HOH A 129 369 129 HOH HOH . G 5 HOH A 130 370 130 HOH HOH . G 5 HOH A 131 371 131 HOH HOH . G 5 HOH A 132 372 132 HOH HOH . G 5 HOH A 133 373 133 HOH HOH . G 5 HOH A 134 374 134 HOH HOH . G 5 HOH A 135 375 135 HOH HOH . G 5 HOH A 136 376 136 HOH HOH . G 5 HOH A 137 377 137 HOH HOH . G 5 HOH A 138 378 138 HOH HOH . G 5 HOH A 139 379 139 HOH HOH . G 5 HOH A 140 380 140 HOH HOH . G 5 HOH A 141 381 141 HOH HOH . G 5 HOH A 142 382 142 HOH HOH . G 5 HOH A 143 383 143 HOH HOH . G 5 HOH A 144 384 144 HOH HOH . G 5 HOH A 145 385 145 HOH HOH . G 5 HOH A 146 386 146 HOH HOH . G 5 HOH A 147 387 147 HOH HOH . G 5 HOH A 148 388 148 HOH HOH . G 5 HOH A 149 389 149 HOH HOH . G 5 HOH A 150 390 150 HOH HOH . G 5 HOH A 151 391 151 HOH HOH . G 5 HOH A 152 392 152 HOH HOH . G 5 HOH A 153 393 153 HOH HOH . G 5 HOH A 154 394 154 HOH HOH . G 5 HOH A 155 395 155 HOH HOH . G 5 HOH A 156 396 156 HOH HOH . G 5 HOH A 157 397 157 HOH HOH . G 5 HOH A 158 398 158 HOH HOH . G 5 HOH A 159 399 159 HOH HOH . G 5 HOH A 160 400 160 HOH HOH . G 5 HOH A 161 401 161 HOH HOH . G 5 HOH A 162 402 162 HOH HOH . G 5 HOH A 163 403 163 HOH HOH . G 5 HOH A 164 404 164 HOH HOH . G 5 HOH A 165 405 165 HOH HOH . G 5 HOH A 166 406 166 HOH HOH . G 5 HOH A 167 407 167 HOH HOH . G 5 HOH A 168 408 168 HOH HOH . G 5 HOH A 169 409 169 HOH HOH . G 5 HOH A 170 410 170 HOH HOH . G 5 HOH A 171 411 171 HOH HOH . G 5 HOH A 172 412 172 HOH HOH . G 5 HOH A 173 413 173 HOH HOH . G 5 HOH A 174 414 174 HOH HOH . G 5 HOH A 175 415 175 HOH HOH . G 5 HOH A 176 416 176 HOH HOH . G 5 HOH A 177 417 177 HOH HOH . G 5 HOH A 178 418 178 HOH HOH . G 5 HOH A 179 419 179 HOH HOH . G 5 HOH A 180 420 180 HOH HOH . G 5 HOH A 181 421 181 HOH HOH . G 5 HOH A 182 422 182 HOH HOH . G 5 HOH A 183 423 183 HOH HOH . G 5 HOH A 184 424 184 HOH HOH . G 5 HOH A 185 425 185 HOH HOH . G 5 HOH A 186 426 186 HOH HOH . G 5 HOH A 187 427 187 HOH HOH . G 5 HOH A 188 428 188 HOH HOH . G 5 HOH A 189 429 189 HOH HOH . G 5 HOH A 190 430 190 HOH HOH . G 5 HOH A 191 431 191 HOH HOH . G 5 HOH A 192 432 192 HOH HOH . G 5 HOH A 193 433 193 HOH HOH . G 5 HOH A 194 434 194 HOH HOH . G 5 HOH A 195 435 195 HOH HOH . G 5 HOH A 196 436 196 HOH HOH . G 5 HOH A 197 437 197 HOH HOH . G 5 HOH A 198 438 198 HOH HOH . G 5 HOH A 199 439 1 HOH HOH . G 5 HOH A 200 440 2 HOH HOH . G 5 HOH A 201 441 3 HOH HOH . G 5 HOH A 202 442 4 HOH HOH . G 5 HOH A 203 443 5 HOH HOH . G 5 HOH A 204 444 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . B 2 40.28 17.662 41.105 1 11.85 ? O5' ADN 236 A 1 HETATM 2 C C5' ADN . . . B 2 41.144 17.991 42.151 1 10.25 ? C5' ADN 236 A 1 HETATM 3 C C4' ADN . . . B 2 41.202 16.893 43.168 1 9.76 ? C4' ADN 236 A 1 HETATM 4 O O4' ADN . . . B 2 41.604 15.665 42.527 1 9.76 ? O4' ADN 236 A 1 HETATM 5 C C3' ADN . . . B 2 42.209 17.141 44.248 1 9.56 ? C3' ADN 236 A 1 HETATM 6 O O3' ADN . . . B 2 41.792 16.535 45.46 1 9.75 ? O3' ADN 236 A 1 HETATM 7 C C2' ADN . . . B 2 43.491 16.488 43.712 1 9.11 ? C2' ADN 236 A 1 HETATM 8 O O2' ADN . . . B 2 44.234 15.827 44.69 1 8.91 ? O2' ADN 236 A 1 HETATM 9 C C1' ADN . . . B 2 43.005 15.501 42.633 1 9.4 ? C1' ADN 236 A 1 HETATM 10 N N9 ADN . . . B 2 43.567 15.736 41.298 1 9.81 ? N9 ADN 236 A 1 HETATM 11 C C8 ADN . . . B 2 43.375 14.863 40.266 1 10.31 ? C8 ADN 236 A 1 HETATM 12 N N7 ADN . . . B 2 43.919 15.346 39.129 1 11.6 ? N7 ADN 236 A 1 HETATM 13 C C5 ADN . . . B 2 44.428 16.542 39.435 1 10.41 ? C5 ADN 236 A 1 HETATM 14 C C6 ADN . . . B 2 45.103 17.548 38.675 1 11.6 ? C6 ADN 236 A 1 HETATM 15 N N6 ADN . . . B 2 45.342 17.367 37.373 1 12.8 ? N6 ADN 236 A 1 HETATM 16 N N1 ADN . . . B 2 45.505 18.643 39.289 1 11.36 ? N1 ADN 236 A 1 HETATM 17 C C2 ADN . . . B 2 45.282 18.809 40.588 1 10.33 ? C2 ADN 236 A 1 HETATM 18 N N3 ADN . . . B 2 44.649 17.934 41.381 1 9.79 ? N3 ADN 236 A 1 HETATM 19 C C4 ADN . . . B 2 44.199 16.8 40.837 1 9.56 ? C4 ADN 236 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #