data_3UAZ # _model_server_result.job_id nm3ITt6rwMv54SMsol5lJQ _model_server_result.datetime_utc '2024-11-13 08:04:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uaz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":239}' # _entry.id 3UAZ # _exptl.entry_id 3UAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UAZ _cell.length_a 122.7 _cell.length_b 122.7 _cell.length_c 68 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 122.7 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 61.35 106.261317 0 4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+3/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.35 106.261317 102 5 'crystal symmetry operation' 11_656 -x+y+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 122.7 0 102 6 'crystal symmetry operation' 12_556 x,x-y,-z+3/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 102 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3UAZ _atom_sites.fract_transf_matrix[1][1] 0.00815 _atom_sites.fract_transf_matrix[1][2] 0.004705 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NOS A 1 236 1 NOS NOS . C 3 SO4 A 1 237 1 SO4 SO4 . D 4 GOL A 1 238 1 GOL GOL . E 4 GOL A 1 239 2 GOL GOL . F 5 HOH A 1 240 1 HOH HOH . F 5 HOH A 2 241 2 HOH HOH . F 5 HOH A 3 242 3 HOH HOH . F 5 HOH A 4 243 4 HOH HOH . F 5 HOH A 5 244 5 HOH HOH . F 5 HOH A 6 245 6 HOH HOH . F 5 HOH A 7 246 7 HOH HOH . F 5 HOH A 8 247 8 HOH HOH . F 5 HOH A 9 248 9 HOH HOH . F 5 HOH A 10 249 10 HOH HOH . F 5 HOH A 11 250 11 HOH HOH . F 5 HOH A 12 251 12 HOH HOH . F 5 HOH A 13 252 13 HOH HOH . F 5 HOH A 14 253 14 HOH HOH . F 5 HOH A 15 254 15 HOH HOH . F 5 HOH A 16 255 16 HOH HOH . F 5 HOH A 17 256 17 HOH HOH . F 5 HOH A 18 257 18 HOH HOH . F 5 HOH A 19 258 19 HOH HOH . F 5 HOH A 20 259 20 HOH HOH . F 5 HOH A 21 260 21 HOH HOH . F 5 HOH A 22 261 22 HOH HOH . F 5 HOH A 23 262 23 HOH HOH . F 5 HOH A 24 263 24 HOH HOH . F 5 HOH A 25 264 25 HOH HOH . F 5 HOH A 26 265 26 HOH HOH . F 5 HOH A 27 266 27 HOH HOH . F 5 HOH A 28 267 28 HOH HOH . F 5 HOH A 29 268 29 HOH HOH . F 5 HOH A 30 269 30 HOH HOH . F 5 HOH A 31 270 31 HOH HOH . F 5 HOH A 32 271 32 HOH HOH . F 5 HOH A 33 272 33 HOH HOH . F 5 HOH A 34 273 34 HOH HOH . F 5 HOH A 35 274 35 HOH HOH . F 5 HOH A 36 275 36 HOH HOH . F 5 HOH A 37 276 37 HOH HOH . F 5 HOH A 38 277 38 HOH HOH . F 5 HOH A 39 278 39 HOH HOH . F 5 HOH A 40 279 40 HOH HOH . F 5 HOH A 41 280 41 HOH HOH . F 5 HOH A 42 281 42 HOH HOH . F 5 HOH A 43 282 43 HOH HOH . F 5 HOH A 44 283 44 HOH HOH . F 5 HOH A 45 284 45 HOH HOH . F 5 HOH A 46 285 46 HOH HOH . F 5 HOH A 47 286 47 HOH HOH . F 5 HOH A 48 287 48 HOH HOH . F 5 HOH A 49 288 49 HOH HOH . F 5 HOH A 50 289 50 HOH HOH . F 5 HOH A 51 290 51 HOH HOH . F 5 HOH A 52 291 52 HOH HOH . F 5 HOH A 53 292 53 HOH HOH . F 5 HOH A 54 293 54 HOH HOH . F 5 HOH A 55 294 55 HOH HOH . F 5 HOH A 56 295 56 HOH HOH . F 5 HOH A 57 296 57 HOH HOH . F 5 HOH A 58 297 58 HOH HOH . F 5 HOH A 59 298 59 HOH HOH . F 5 HOH A 60 299 60 HOH HOH . F 5 HOH A 61 300 61 HOH HOH . F 5 HOH A 62 301 62 HOH HOH . F 5 HOH A 63 302 63 HOH HOH . F 5 HOH A 64 303 64 HOH HOH . F 5 HOH A 65 304 65 HOH HOH . F 5 HOH A 66 305 66 HOH HOH . F 5 HOH A 67 306 67 HOH HOH . F 5 HOH A 68 307 68 HOH HOH . F 5 HOH A 69 308 69 HOH HOH . F 5 HOH A 70 309 70 HOH HOH . F 5 HOH A 71 310 71 HOH HOH . F 5 HOH A 72 311 72 HOH HOH . F 5 HOH A 73 312 73 HOH HOH . F 5 HOH A 74 313 74 HOH HOH . F 5 HOH A 75 314 75 HOH HOH . F 5 HOH A 76 315 76 HOH HOH . F 5 HOH A 77 316 77 HOH HOH . F 5 HOH A 78 317 78 HOH HOH . F 5 HOH A 79 318 79 HOH HOH . F 5 HOH A 80 319 80 HOH HOH . F 5 HOH A 81 320 81 HOH HOH . F 5 HOH A 82 321 82 HOH HOH . F 5 HOH A 83 322 83 HOH HOH . F 5 HOH A 84 323 84 HOH HOH . F 5 HOH A 85 324 85 HOH HOH . F 5 HOH A 86 325 86 HOH HOH . F 5 HOH A 87 326 87 HOH HOH . F 5 HOH A 88 327 88 HOH HOH . F 5 HOH A 89 328 89 HOH HOH . F 5 HOH A 90 329 90 HOH HOH . F 5 HOH A 91 330 91 HOH HOH . F 5 HOH A 92 331 92 HOH HOH . F 5 HOH A 93 332 93 HOH HOH . F 5 HOH A 94 333 94 HOH HOH . F 5 HOH A 95 334 95 HOH HOH . F 5 HOH A 96 335 96 HOH HOH . F 5 HOH A 97 336 97 HOH HOH . F 5 HOH A 98 337 98 HOH HOH . F 5 HOH A 99 338 99 HOH HOH . F 5 HOH A 100 339 100 HOH HOH . F 5 HOH A 101 340 101 HOH HOH . F 5 HOH A 102 341 102 HOH HOH . F 5 HOH A 103 342 103 HOH HOH . F 5 HOH A 104 343 104 HOH HOH . F 5 HOH A 105 344 105 HOH HOH . F 5 HOH A 106 345 106 HOH HOH . F 5 HOH A 107 346 107 HOH HOH . F 5 HOH A 108 347 108 HOH HOH . F 5 HOH A 109 348 109 HOH HOH . F 5 HOH A 110 349 110 HOH HOH . F 5 HOH A 111 350 111 HOH HOH . F 5 HOH A 112 351 112 HOH HOH . F 5 HOH A 113 352 113 HOH HOH . F 5 HOH A 114 353 114 HOH HOH . F 5 HOH A 115 354 115 HOH HOH . F 5 HOH A 116 355 116 HOH HOH . F 5 HOH A 117 356 117 HOH HOH . F 5 HOH A 118 357 118 HOH HOH . F 5 HOH A 119 358 119 HOH HOH . F 5 HOH A 120 359 120 HOH HOH . F 5 HOH A 121 360 121 HOH HOH . F 5 HOH A 122 361 122 HOH HOH . F 5 HOH A 123 362 123 HOH HOH . F 5 HOH A 124 363 124 HOH HOH . F 5 HOH A 125 364 125 HOH HOH . F 5 HOH A 126 365 126 HOH HOH . F 5 HOH A 127 366 127 HOH HOH . F 5 HOH A 128 367 128 HOH HOH . F 5 HOH A 129 368 129 HOH HOH . F 5 HOH A 130 369 130 HOH HOH . F 5 HOH A 131 370 131 HOH HOH . F 5 HOH A 132 371 132 HOH HOH . F 5 HOH A 133 372 133 HOH HOH . F 5 HOH A 134 373 134 HOH HOH . F 5 HOH A 135 374 135 HOH HOH . F 5 HOH A 136 375 136 HOH HOH . F 5 HOH A 137 376 137 HOH HOH . F 5 HOH A 138 377 138 HOH HOH . F 5 HOH A 139 378 139 HOH HOH . F 5 HOH A 140 379 140 HOH HOH . F 5 HOH A 141 380 141 HOH HOH . F 5 HOH A 142 381 142 HOH HOH . F 5 HOH A 143 382 143 HOH HOH . F 5 HOH A 144 383 144 HOH HOH . F 5 HOH A 145 384 145 HOH HOH . F 5 HOH A 146 385 146 HOH HOH . F 5 HOH A 147 386 147 HOH HOH . F 5 HOH A 148 387 148 HOH HOH . F 5 HOH A 149 388 149 HOH HOH . F 5 HOH A 150 389 150 HOH HOH . F 5 HOH A 151 390 151 HOH HOH . F 5 HOH A 152 391 152 HOH HOH . F 5 HOH A 153 392 153 HOH HOH . F 5 HOH A 154 393 154 HOH HOH . F 5 HOH A 155 394 155 HOH HOH . F 5 HOH A 156 395 156 HOH HOH . F 5 HOH A 157 396 157 HOH HOH . F 5 HOH A 158 397 158 HOH HOH . F 5 HOH A 159 398 159 HOH HOH . F 5 HOH A 160 399 160 HOH HOH . F 5 HOH A 161 400 161 HOH HOH . F 5 HOH A 162 401 162 HOH HOH . F 5 HOH A 163 402 163 HOH HOH . F 5 HOH A 164 403 164 HOH HOH . F 5 HOH A 165 404 165 HOH HOH . F 5 HOH A 166 405 166 HOH HOH . F 5 HOH A 167 406 167 HOH HOH . F 5 HOH A 168 407 168 HOH HOH . F 5 HOH A 169 408 169 HOH HOH . F 5 HOH A 170 409 170 HOH HOH . F 5 HOH A 171 410 171 HOH HOH . F 5 HOH A 172 411 172 HOH HOH . F 5 HOH A 173 412 173 HOH HOH . F 5 HOH A 174 413 174 HOH HOH . F 5 HOH A 175 414 175 HOH HOH . F 5 HOH A 176 415 176 HOH HOH . F 5 HOH A 177 416 177 HOH HOH . F 5 HOH A 178 417 178 HOH HOH . F 5 HOH A 179 418 179 HOH HOH . F 5 HOH A 180 419 180 HOH HOH . F 5 HOH A 181 420 181 HOH HOH . F 5 HOH A 182 421 182 HOH HOH . F 5 HOH A 183 422 183 HOH HOH . F 5 HOH A 184 423 184 HOH HOH . F 5 HOH A 185 424 185 HOH HOH . F 5 HOH A 186 425 186 HOH HOH . F 5 HOH A 187 426 187 HOH HOH . F 5 HOH A 188 427 188 HOH HOH . F 5 HOH A 189 428 189 HOH HOH . F 5 HOH A 190 429 1 HOH HOH . F 5 HOH A 191 430 2 HOH HOH . F 5 HOH A 192 431 3 HOH HOH . F 5 HOH A 193 432 4 HOH HOH . F 5 HOH A 194 433 5 HOH HOH . F 5 HOH A 195 434 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 42.014 19.503 67.693 1 35.28 ? C1 GOL 239 A 1 HETATM 2 O O1 GOL . . . E 4 40.664 19.051 67.724 1 18.19 ? O1 GOL 239 A 1 HETATM 3 C C2 GOL . . . E 4 42.177 20.614 68.72 1 42.37 ? C2 GOL 239 A 1 HETATM 4 O O2 GOL . . . E 4 42.049 20.067 70.04 1 47.54 ? O2 GOL 239 A 1 HETATM 5 C C3 GOL . . . E 4 43.544 21.266 68.556 1 45.9 ? C3 GOL 239 A 1 HETATM 6 O O3 GOL . . . E 4 43.566 22.482 69.313 1 47.02 ? O3 GOL 239 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #