data_3UB5
#
_model_server_result.job_id            niB5xfQFKpjAy8KHk1Be_g 
_model_server_result.datetime_utc      '2024-11-09 02:41:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ub5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":377}' 
#
_entry.id    3UB5 
#
_exptl.entry_id    3UB5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UB5 
_cell.length_a            38 
_cell.length_b            72 
_cell.length_c            186.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UB5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 P ACE 0 1_555 B N ALA 2 P ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
metalc ? metalc1 A O SER 198 A SER 199 1_555 E CA CA . A CA 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc2 A OG1 THR 200 A THR 201 1_555 E CA CA . A CA 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc3 A OE2 GLU 204 A GLU 205 1_555 E CA CA . A CA 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc4 C O2B ATP . A ATP 376 1_555 D CA CA . A CA 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc5 C O1B ATP . A ATP 376 1_555 D CA CA . A CA 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3UB5 
_atom_sites.fract_transf_matrix[1][1]    0.026316 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013889 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005353 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ATP A 1 376 376 ATP ATP . 
D 4 CA A 1 377 377 CA CA . 
E 4 CA A 1 378 378 CA CA . 
F 5 GOL P 1 140 140 GOL GOL . 
G 6 CL P 1 141 141 CL CL . 
H 7 HOH A 1 379 4 HOH HOH . 
H 7 HOH A 2 380 5 HOH HOH . 
H 7 HOH A 3 381 11 HOH HOH . 
H 7 HOH A 4 382 12 HOH HOH . 
H 7 HOH A 5 383 14 HOH HOH . 
H 7 HOH A 6 384 20 HOH HOH . 
H 7 HOH A 7 385 21 HOH HOH . 
H 7 HOH A 8 386 24 HOH HOH . 
H 7 HOH A 9 387 25 HOH HOH . 
H 7 HOH A 10 388 27 HOH HOH . 
H 7 HOH A 11 389 35 HOH HOH . 
H 7 HOH A 12 390 36 HOH HOH . 
H 7 HOH A 13 391 37 HOH HOH . 
H 7 HOH A 14 392 38 HOH HOH . 
H 7 HOH A 15 393 39 HOH HOH . 
H 7 HOH A 16 394 41 HOH HOH . 
H 7 HOH A 17 395 42 HOH HOH . 
H 7 HOH A 18 396 46 HOH HOH . 
H 7 HOH A 19 397 47 HOH HOH . 
H 7 HOH A 20 398 48 HOH HOH . 
H 7 HOH A 21 399 49 HOH HOH . 
H 7 HOH A 22 400 50 HOH HOH . 
H 7 HOH A 23 401 54 HOH HOH . 
H 7 HOH A 24 402 55 HOH HOH . 
H 7 HOH A 25 403 57 HOH HOH . 
H 7 HOH A 26 404 58 HOH HOH . 
H 7 HOH A 27 405 60 HOH HOH . 
H 7 HOH A 28 406 62 HOH HOH . 
H 7 HOH A 29 407 64 HOH HOH . 
H 7 HOH A 30 408 66 HOH HOH . 
H 7 HOH A 31 409 70 HOH HOH . 
H 7 HOH A 32 410 74 HOH HOH . 
H 7 HOH A 33 411 76 HOH HOH . 
H 7 HOH A 34 412 78 HOH HOH . 
H 7 HOH A 35 413 89 HOH HOH . 
H 7 HOH A 36 414 90 HOH HOH . 
H 7 HOH A 37 415 94 HOH HOH . 
H 7 HOH A 38 416 98 HOH HOH . 
H 7 HOH A 39 417 99 HOH HOH . 
H 7 HOH A 40 418 100 HOH HOH . 
H 7 HOH A 41 419 103 HOH HOH . 
H 7 HOH A 42 420 106 HOH HOH . 
H 7 HOH A 43 421 108 HOH HOH . 
H 7 HOH A 44 422 113 HOH HOH . 
H 7 HOH A 45 423 114 HOH HOH . 
H 7 HOH A 46 424 116 HOH HOH . 
H 7 HOH A 47 425 125 HOH HOH . 
H 7 HOH A 48 426 130 HOH HOH . 
H 7 HOH A 49 427 142 HOH HOH . 
H 7 HOH A 50 428 146 HOH HOH . 
H 7 HOH A 51 429 150 HOH HOH . 
H 7 HOH A 52 430 151 HOH HOH . 
H 7 HOH A 53 431 154 HOH HOH . 
H 7 HOH A 54 432 155 HOH HOH . 
H 7 HOH A 55 433 156 HOH HOH . 
I 7 HOH P 1 142 3 HOH HOH . 
I 7 HOH P 2 143 6 HOH HOH . 
I 7 HOH P 3 144 7 HOH HOH . 
I 7 HOH P 4 145 145 HOH HOH . 
I 7 HOH P 5 146 8 HOH HOH . 
I 7 HOH P 6 147 147 HOH HOH . 
I 7 HOH P 7 148 148 HOH HOH . 
I 7 HOH P 8 149 15 HOH HOH . 
I 7 HOH P 9 150 16 HOH HOH . 
I 7 HOH P 10 151 19 HOH HOH . 
I 7 HOH P 11 152 152 HOH HOH . 
I 7 HOH P 12 153 23 HOH HOH . 
I 7 HOH P 13 154 28 HOH HOH . 
I 7 HOH P 14 155 32 HOH HOH . 
I 7 HOH P 15 156 33 HOH HOH . 
I 7 HOH P 16 157 157 HOH HOH . 
I 7 HOH P 17 158 40 HOH HOH . 
I 7 HOH P 18 159 43 HOH HOH . 
I 7 HOH P 19 160 45 HOH HOH . 
I 7 HOH P 20 161 51 HOH HOH . 
I 7 HOH P 21 162 69 HOH HOH . 
I 7 HOH P 22 163 73 HOH HOH . 
I 7 HOH P 23 164 96 HOH HOH . 
I 7 HOH P 24 165 97 HOH HOH . 
I 7 HOH P 25 166 111 HOH HOH . 
I 7 HOH P 26 167 112 HOH HOH . 
I 7 HOH P 27 168 119 HOH HOH . 
I 7 HOH P 28 169 138 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -3.939 
_atom_site.Cartn_y               -14.752 
_atom_site.Cartn_z               31.269 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        66.6 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           377 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#