data_3UBB # _model_server_result.job_id u_PW9pdrwEqm_GyhqeEWpw _model_server_result.datetime_utc '2024-11-04 22:50:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ubb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3UBB # _exptl.entry_id 3UBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.275 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'propan-2-yl hydrogen (S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}ethyl]phosphonate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UBB _cell.length_a 111.722 _cell.length_b 111.722 _cell.length_c 121.81 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.861 96.75409 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -55.861 96.75409 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 111 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id P _struct_conn.ptnr2_label_comp_id 3UB _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 3UB _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.622 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H20 N O5 P' _chem_comp.formula_weight 301.275 _chem_comp.id 3UB _chem_comp.mon_nstd_flag . _chem_comp.name 'propan-2-yl hydrogen (S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}ethyl]phosphonate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O2P 3UB doub 1 n n P O3P 3UB sing 2 n n C1 C3 3UB sing 3 n n C2 C1 3UB sing 4 n n C4 P 3UB sing 5 n n C4 NC 3UB sing 6 n n C5 C4 3UB sing 7 n n C6 O2C 3UB sing 8 n n NC C6 3UB sing 9 n n O1C C6 3UB doub 10 n n O1P P 3UB sing 11 n n O1P C1 3UB sing 12 n n O2C C7 3UB sing 13 n n C71 C7 3UB sing 14 n n C71 C72 3UB sing 15 n y C73 C72 3UB doub 16 n y C74 C73 3UB sing 17 n y C75 C74 3UB doub 18 n y C75 C76 3UB sing 19 n y C76 C71 3UB doub 20 n y C1 H1 3UB sing 21 n n C2 H2 3UB sing 22 n n C2 H2A 3UB sing 23 n n C2 H2B 3UB sing 24 n n C3 H3 3UB sing 25 n n C3 H3A 3UB sing 26 n n C3 H3B 3UB sing 27 n n C4 H4 3UB sing 28 n n C5 H5 3UB sing 29 n n C5 H5A 3UB sing 30 n n C5 H5B 3UB sing 31 n n C7 H7 3UB sing 32 n n C7 H7A 3UB sing 33 n n NC HNC 3UB sing 34 n n O3P HO3P 3UB sing 35 n n C72 H72 3UB sing 36 n n C73 H73 3UB sing 37 n n C74 H74 3UB sing 38 n n C75 H75 3UB sing 39 n n C76 H76 3UB sing 40 n n # _atom_sites.entry_id 3UBB _atom_sites.fract_transf_matrix[1][1] 0.008951 _atom_sites.fract_transf_matrix[1][2] 0.005168 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3UB A 1 301 1 3UB 3UB . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 10 HOH HOH . C 3 HOH A 10 410 11 HOH HOH . C 3 HOH A 11 411 12 HOH HOH . C 3 HOH A 12 412 13 HOH HOH . C 3 HOH A 13 413 15 HOH HOH . C 3 HOH A 14 414 16 HOH HOH . C 3 HOH A 15 415 17 HOH HOH . C 3 HOH A 16 416 18 HOH HOH . C 3 HOH A 17 417 19 HOH HOH . C 3 HOH A 18 418 20 HOH HOH . C 3 HOH A 19 419 22 HOH HOH . C 3 HOH A 20 420 25 HOH HOH . C 3 HOH A 21 421 27 HOH HOH . C 3 HOH A 22 422 28 HOH HOH . C 3 HOH A 23 423 29 HOH HOH . C 3 HOH A 24 424 30 HOH HOH . C 3 HOH A 25 425 31 HOH HOH . C 3 HOH A 26 426 33 HOH HOH . C 3 HOH A 27 427 35 HOH HOH . C 3 HOH A 28 428 36 HOH HOH . C 3 HOH A 29 429 38 HOH HOH . C 3 HOH A 30 430 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2P 3UB . . . B 2 1.691 48.692 33.517 1 43.46 ? O2P 3UB 301 A 1 HETATM 2 P P 3UB . . . B 2 0.259 48.12 33.29 1 40.74 ? P 3UB 301 A 1 HETATM 3 C C1 3UB . . . B 2 0.526 45.599 32.656 1 44.69 ? C1 3UB 301 A 1 HETATM 4 C C2 3UB . . . B 2 -0.652 44.832 33.121 1 47.93 ? C2 3UB 301 A 1 HETATM 5 C C3 3UB . . . B 2 1.348 44.909 31.591 1 41.5 ? C3 3UB 301 A 1 HETATM 6 C C4 3UB . . . B 2 -0.929 49.446 32.8 1 51.2 ? C4 3UB 301 A 1 HETATM 7 C C5 3UB . . . B 2 -1.87 48.962 31.66 1 51.53 ? C5 3UB 301 A 1 HETATM 8 C C6 3UB . . . B 2 -0.454 51.807 33.332 1 62.27 ? C6 3UB 301 A 1 HETATM 9 C C7 3UB . . . B 2 0.019 54.148 33.746 1 61.22 ? C7 3UB 301 A 1 HETATM 10 N NC 3UB . . . B 2 -0.341 50.682 32.345 1 56.37 ? NC 3UB 301 A 1 HETATM 11 O O1C 3UB . . . B 2 -0.967 51.718 34.46 1 64.8 ? O1C 3UB 301 A 1 HETATM 12 O O1P 3UB . . . B 2 0.204 46.888 32.274 1 47.12 ? O1P 3UB 301 A 1 HETATM 13 O O2C 3UB . . . B 2 0.057 52.987 32.928 1 66.45 ? O2C 3UB 301 A 1 HETATM 14 C C71 3UB . . . B 2 0.098 55.369 32.894 1 62.59 ? C71 3UB 301 A 1 HETATM 15 C C72 3UB . . . B 2 0.651 55.258 31.623 1 59.22 ? C72 3UB 301 A 1 HETATM 16 C C73 3UB . . . B 2 0.743 56.373 30.818 1 62.99 ? C73 3UB 301 A 1 HETATM 17 C C74 3UB . . . B 2 0.262 57.62 31.292 1 67.19 ? C74 3UB 301 A 1 HETATM 18 C C75 3UB . . . B 2 -0.283 57.728 32.556 1 67.84 ? C75 3UB 301 A 1 HETATM 19 C C76 3UB . . . B 2 -0.377 56.609 33.366 1 66.53 ? C76 3UB 301 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #