data_3UBH # _model_server_result.job_id rh7W5JaQ7QMzLSkqC6hYRg _model_server_result.datetime_utc '2024-11-05 01:19:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ubh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":852}' # _entry.id 3UBH # _exptl.entry_id 3UBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UBH _cell.length_a 81.499 _cell.length_b 126.656 _cell.length_c 62.009 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 18 A GLU 450 1_555 B CA CA . A CA 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc2 A OE1 GLU 18 A GLU 450 1_555 C CA CA . A CA 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc3 A OD1 ASP 64 A ASP 496 1_555 B CA CA . A CA 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc4 A OE1 GLU 66 A GLU 498 1_555 B CA CA . A CA 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A OE2 GLU 66 A GLU 498 1_555 C CA CA . A CA 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc6 A OE1 GLU 66 A GLU 498 1_555 C CA CA . A CA 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc7 A OD1 ASP 103 A ASP 535 1_555 C CA CA . A CA 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc8 A O VAL 104 A VAL 536 1_555 C CA CA . A CA 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc9 A OD1 ASN 105 A ASN 537 1_555 D CA CA . A CA 854 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc10 A OD2 ASP 106 A ASP 538 1_555 B CA CA . A CA 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc11 A OD1 ASP 106 A ASP 538 1_555 B CA CA . A CA 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc12 A OD1 ASP 106 A ASP 538 1_555 C CA CA . A CA 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc13 A OE2 GLU 107 A GLU 539 1_555 B CA CA . A CA 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc14 A O GLU 107 A GLU 539 1_555 D CA CA . A CA 854 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc15 A OD2 ASP 139 A ASP 571 1_555 D CA CA . A CA 854 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc16 A OD1 ASP 139 A ASP 571 1_555 D CA CA . A CA 854 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc17 A OD2 ASP 141 A ASP 573 1_555 C CA CA . A CA 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc18 A OD1 ASP 141 A ASP 573 1_555 D CA CA . A CA 854 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc19 A OD2 ASP 190 A ASP 622 1_555 D CA CA . A CA 854 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc20 A OE1 GLN 201 A GLN 633 1_555 D CA CA . A CA 854 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc21 A OE1 GLU 230 A GLU 662 1_555 E CA CA . A CA 855 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc22 A OE2 GLU 230 A GLU 662 1_555 F CA CA . A CA 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc23 A OD2 ASP 281 A ASP 713 1_555 E CA CA . A CA 855 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc24 A OE1 GLU 283 A GLU 715 1_555 E CA CA . A CA 855 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc25 A OE1 GLU 283 A GLU 715 1_555 F CA CA . A CA 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc26 A OE2 GLU 283 A GLU 715 1_555 F CA CA . A CA 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc27 A OD1 ASP 316 A ASP 748 1_555 F CA CA . A CA 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc28 A O VAL 317 A VAL 749 1_555 F CA CA . A CA 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc29 A OD1 ASN 318 A ASN 750 1_555 G CA CA . A CA 857 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc30 A OD2 ASP 319 A ASP 751 1_555 E CA CA . A CA 855 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc31 A OD1 ASP 319 A ASP 751 1_555 F CA CA . A CA 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc32 A O ASN 320 A ASN 752 1_555 G CA CA . A CA 857 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc33 A OD2 ASP 351 A ASP 783 1_555 G CA CA . A CA 857 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc34 A OD1 ASP 351 A ASP 783 1_555 G CA CA . A CA 857 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc35 A OD1 ASP 353 A ASP 785 1_555 F CA CA . A CA 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc36 A OD2 ASP 353 A ASP 785 1_555 G CA CA . A CA 857 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc37 A O ASN 357 A ASN 789 1_555 G CA CA . A CA 857 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc38 A OD2 ASP 400 A ASP 832 1_555 G CA CA . A CA 857 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3UBH _atom_sites.fract_transf_matrix[1][1] 0.01227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 852 852 CA CA . C 2 CA A 1 853 853 CA CA . D 2 CA A 1 854 854 CA CA . E 2 CA A 1 855 855 CA CA . F 2 CA A 1 856 856 CA CA . G 2 CA A 1 857 857 CA CA . H 3 HOH A 1 1 1 HOH HOH . H 3 HOH A 2 2 2 HOH HOH . H 3 HOH A 3 3 3 HOH HOH . H 3 HOH A 4 4 4 HOH HOH . H 3 HOH A 5 5 5 HOH HOH . H 3 HOH A 6 6 6 HOH HOH . H 3 HOH A 7 7 7 HOH HOH . H 3 HOH A 8 8 8 HOH HOH . H 3 HOH A 9 9 9 HOH HOH . H 3 HOH A 10 10 10 HOH HOH . H 3 HOH A 11 11 11 HOH HOH . H 3 HOH A 12 12 12 HOH HOH . H 3 HOH A 13 13 13 HOH HOH . H 3 HOH A 14 14 14 HOH HOH . H 3 HOH A 15 15 15 HOH HOH . H 3 HOH A 16 16 16 HOH HOH . H 3 HOH A 17 17 17 HOH HOH . H 3 HOH A 18 18 18 HOH HOH . H 3 HOH A 19 19 19 HOH HOH . H 3 HOH A 20 20 20 HOH HOH . H 3 HOH A 21 21 21 HOH HOH . H 3 HOH A 22 22 22 HOH HOH . H 3 HOH A 23 23 23 HOH HOH . H 3 HOH A 24 24 24 HOH HOH . H 3 HOH A 25 25 25 HOH HOH . H 3 HOH A 26 26 26 HOH HOH . H 3 HOH A 27 27 27 HOH HOH . H 3 HOH A 28 28 28 HOH HOH . H 3 HOH A 29 29 29 HOH HOH . H 3 HOH A 30 30 30 HOH HOH . H 3 HOH A 31 31 31 HOH HOH . H 3 HOH A 32 32 32 HOH HOH . H 3 HOH A 33 33 33 HOH HOH . H 3 HOH A 34 34 34 HOH HOH . H 3 HOH A 35 35 35 HOH HOH . H 3 HOH A 36 36 36 HOH HOH . H 3 HOH A 37 37 37 HOH HOH . H 3 HOH A 38 38 38 HOH HOH . H 3 HOH A 39 39 39 HOH HOH . H 3 HOH A 40 40 40 HOH HOH . H 3 HOH A 41 41 41 HOH HOH . H 3 HOH A 42 42 42 HOH HOH . H 3 HOH A 43 43 43 HOH HOH . H 3 HOH A 44 44 44 HOH HOH . H 3 HOH A 45 45 45 HOH HOH . H 3 HOH A 46 46 46 HOH HOH . H 3 HOH A 47 47 47 HOH HOH . H 3 HOH A 48 48 48 HOH HOH . H 3 HOH A 49 49 49 HOH HOH . H 3 HOH A 50 50 50 HOH HOH . H 3 HOH A 51 51 51 HOH HOH . H 3 HOH A 52 52 52 HOH HOH . H 3 HOH A 53 53 53 HOH HOH . H 3 HOH A 54 54 54 HOH HOH . H 3 HOH A 55 55 55 HOH HOH . H 3 HOH A 56 56 56 HOH HOH . H 3 HOH A 57 57 57 HOH HOH . H 3 HOH A 58 58 58 HOH HOH . H 3 HOH A 59 59 59 HOH HOH . H 3 HOH A 60 60 60 HOH HOH . H 3 HOH A 61 61 61 HOH HOH . H 3 HOH A 62 62 62 HOH HOH . H 3 HOH A 63 63 63 HOH HOH . H 3 HOH A 64 64 64 HOH HOH . H 3 HOH A 65 65 65 HOH HOH . H 3 HOH A 66 66 66 HOH HOH . H 3 HOH A 67 67 67 HOH HOH . H 3 HOH A 68 68 68 HOH HOH . H 3 HOH A 69 69 69 HOH HOH . H 3 HOH A 70 70 70 HOH HOH . H 3 HOH A 71 71 71 HOH HOH . H 3 HOH A 72 72 72 HOH HOH . H 3 HOH A 73 73 73 HOH HOH . H 3 HOH A 74 74 74 HOH HOH . H 3 HOH A 75 75 75 HOH HOH . H 3 HOH A 76 76 76 HOH HOH . H 3 HOH A 77 77 77 HOH HOH . H 3 HOH A 78 78 78 HOH HOH . H 3 HOH A 79 79 79 HOH HOH . H 3 HOH A 80 80 80 HOH HOH . H 3 HOH A 81 81 81 HOH HOH . H 3 HOH A 82 82 82 HOH HOH . H 3 HOH A 83 83 83 HOH HOH . H 3 HOH A 84 84 84 HOH HOH . H 3 HOH A 85 85 85 HOH HOH . H 3 HOH A 86 86 86 HOH HOH . H 3 HOH A 87 87 87 HOH HOH . H 3 HOH A 88 88 88 HOH HOH . H 3 HOH A 89 89 89 HOH HOH . H 3 HOH A 90 90 90 HOH HOH . H 3 HOH A 91 91 91 HOH HOH . H 3 HOH A 92 92 92 HOH HOH . H 3 HOH A 93 93 93 HOH HOH . H 3 HOH A 94 94 94 HOH HOH . H 3 HOH A 95 95 95 HOH HOH . H 3 HOH A 96 96 96 HOH HOH . H 3 HOH A 97 97 97 HOH HOH . H 3 HOH A 98 98 98 HOH HOH . H 3 HOH A 99 99 99 HOH HOH . H 3 HOH A 100 100 100 HOH HOH . H 3 HOH A 101 101 101 HOH HOH . H 3 HOH A 102 102 102 HOH HOH . H 3 HOH A 103 103 103 HOH HOH . H 3 HOH A 104 104 104 HOH HOH . H 3 HOH A 105 105 105 HOH HOH . H 3 HOH A 106 106 106 HOH HOH . H 3 HOH A 107 107 107 HOH HOH . H 3 HOH A 108 108 108 HOH HOH . H 3 HOH A 109 109 109 HOH HOH . H 3 HOH A 110 110 110 HOH HOH . H 3 HOH A 111 111 111 HOH HOH . H 3 HOH A 112 112 112 HOH HOH . H 3 HOH A 113 113 113 HOH HOH . H 3 HOH A 114 114 114 HOH HOH . H 3 HOH A 115 115 115 HOH HOH . H 3 HOH A 116 116 116 HOH HOH . H 3 HOH A 117 117 117 HOH HOH . H 3 HOH A 118 118 118 HOH HOH . H 3 HOH A 119 119 119 HOH HOH . H 3 HOH A 120 120 120 HOH HOH . H 3 HOH A 121 121 121 HOH HOH . H 3 HOH A 122 122 122 HOH HOH . H 3 HOH A 123 123 123 HOH HOH . H 3 HOH A 124 124 124 HOH HOH . H 3 HOH A 125 125 125 HOH HOH . H 3 HOH A 126 126 126 HOH HOH . H 3 HOH A 127 127 127 HOH HOH . H 3 HOH A 128 128 128 HOH HOH . H 3 HOH A 129 129 129 HOH HOH . H 3 HOH A 130 130 130 HOH HOH . H 3 HOH A 131 131 131 HOH HOH . H 3 HOH A 132 132 132 HOH HOH . H 3 HOH A 133 133 133 HOH HOH . H 3 HOH A 134 134 134 HOH HOH . H 3 HOH A 135 135 135 HOH HOH . H 3 HOH A 136 136 136 HOH HOH . H 3 HOH A 137 137 137 HOH HOH . H 3 HOH A 138 138 138 HOH HOH . H 3 HOH A 139 139 139 HOH HOH . H 3 HOH A 140 140 140 HOH HOH . H 3 HOH A 141 141 141 HOH HOH . H 3 HOH A 142 142 142 HOH HOH . H 3 HOH A 143 143 143 HOH HOH . H 3 HOH A 144 144 144 HOH HOH . H 3 HOH A 145 145 145 HOH HOH . H 3 HOH A 146 146 146 HOH HOH . H 3 HOH A 147 147 147 HOH HOH . H 3 HOH A 148 148 148 HOH HOH . H 3 HOH A 149 149 149 HOH HOH . H 3 HOH A 150 150 150 HOH HOH . H 3 HOH A 151 151 151 HOH HOH . H 3 HOH A 152 152 152 HOH HOH . H 3 HOH A 153 153 153 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -44.118 _atom_site.Cartn_y 27.441 _atom_site.Cartn_z -2.472 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 852 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #