data_3UBK
#
_model_server_result.job_id            59RDCo1Del2FeZpVe0tHNQ 
_model_server_result.datetime_utc      '2024-10-18 16:19:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ubk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":246}' 
#
_entry.id    3UBK 
#
_exptl.entry_id    3UBK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UBK 
_cell.length_a            82.843 
_cell.length_b            82.843 
_cell.length_c            175.608 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UBK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 I N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3UBK 
_atom_sites.fract_transf_matrix[1][1]    0.012071 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012071 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005695 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 241 1 SO4 SO4 . 
D 2 SO4 A 1 242 4 SO4 SO4 . 
E 2 SO4 A 1 243 5 SO4 SO4 . 
F 3 GOL A 1 244 1 GOL GOL . 
G 4 CL A 1 245 1 CL CL . 
H 3 GOL A 1 246 1 GOL GOL . 
I 3 GOL A 1 247 1 GOL GOL . 
J 4 CL A 1 248 1 CL CL . 
K 2 SO4 B 1 241 3 SO4 SO4 . 
L 4 CL B 1 242 1 CL CL . 
M 4 CL B 1 243 1 CL CL . 
N 5 HOH A 1 249 2 HOH HOH . 
N 5 HOH A 2 250 4 HOH HOH . 
N 5 HOH A 3 251 5 HOH HOH . 
N 5 HOH A 4 252 10 HOH HOH . 
N 5 HOH A 5 253 13 HOH HOH . 
N 5 HOH A 6 254 16 HOH HOH . 
N 5 HOH A 7 255 18 HOH HOH . 
N 5 HOH A 8 256 19 HOH HOH . 
N 5 HOH A 9 257 21 HOH HOH . 
N 5 HOH A 10 258 23 HOH HOH . 
N 5 HOH A 11 259 26 HOH HOH . 
N 5 HOH A 12 260 28 HOH HOH . 
N 5 HOH A 13 261 29 HOH HOH . 
N 5 HOH A 14 262 31 HOH HOH . 
N 5 HOH A 15 263 32 HOH HOH . 
N 5 HOH A 16 264 34 HOH HOH . 
N 5 HOH A 17 265 36 HOH HOH . 
N 5 HOH A 18 266 40 HOH HOH . 
N 5 HOH A 19 267 41 HOH HOH . 
N 5 HOH A 20 268 42 HOH HOH . 
N 5 HOH A 21 269 43 HOH HOH . 
N 5 HOH A 22 270 46 HOH HOH . 
N 5 HOH A 23 271 47 HOH HOH . 
N 5 HOH A 24 272 54 HOH HOH . 
N 5 HOH A 25 273 55 HOH HOH . 
N 5 HOH A 26 274 59 HOH HOH . 
N 5 HOH A 27 275 60 HOH HOH . 
N 5 HOH A 28 276 68 HOH HOH . 
N 5 HOH A 29 277 69 HOH HOH . 
N 5 HOH A 30 278 70 HOH HOH . 
N 5 HOH A 31 279 71 HOH HOH . 
N 5 HOH A 32 280 72 HOH HOH . 
N 5 HOH A 33 281 73 HOH HOH . 
N 5 HOH A 34 282 74 HOH HOH . 
N 5 HOH A 35 283 75 HOH HOH . 
N 5 HOH A 36 284 76 HOH HOH . 
N 5 HOH A 37 285 77 HOH HOH . 
N 5 HOH A 38 286 82 HOH HOH . 
N 5 HOH A 39 287 86 HOH HOH . 
N 5 HOH A 40 288 87 HOH HOH . 
N 5 HOH A 41 289 88 HOH HOH . 
N 5 HOH A 42 290 89 HOH HOH . 
N 5 HOH A 43 291 90 HOH HOH . 
N 5 HOH A 44 292 91 HOH HOH . 
N 5 HOH A 45 293 92 HOH HOH . 
N 5 HOH A 46 294 94 HOH HOH . 
N 5 HOH A 47 295 95 HOH HOH . 
N 5 HOH A 48 296 97 HOH HOH . 
N 5 HOH A 49 297 100 HOH HOH . 
N 5 HOH A 50 298 101 HOH HOH . 
N 5 HOH A 51 299 102 HOH HOH . 
N 5 HOH A 52 300 103 HOH HOH . 
N 5 HOH A 53 301 124 HOH HOH . 
N 5 HOH A 54 302 125 HOH HOH . 
N 5 HOH A 55 303 126 HOH HOH . 
N 5 HOH A 56 304 127 HOH HOH . 
N 5 HOH A 57 305 128 HOH HOH . 
N 5 HOH A 58 306 130 HOH HOH . 
N 5 HOH A 59 307 131 HOH HOH . 
N 5 HOH A 60 308 134 HOH HOH . 
N 5 HOH A 61 309 135 HOH HOH . 
N 5 HOH A 62 310 136 HOH HOH . 
N 5 HOH A 63 311 137 HOH HOH . 
N 5 HOH A 64 312 142 HOH HOH . 
N 5 HOH A 65 313 143 HOH HOH . 
N 5 HOH A 66 314 144 HOH HOH . 
N 5 HOH A 67 315 145 HOH HOH . 
N 5 HOH A 68 316 146 HOH HOH . 
N 5 HOH A 69 317 147 HOH HOH . 
N 5 HOH A 70 318 148 HOH HOH . 
N 5 HOH A 71 319 154 HOH HOH . 
N 5 HOH A 72 320 157 HOH HOH . 
N 5 HOH A 73 321 158 HOH HOH . 
N 5 HOH A 74 322 165 HOH HOH . 
N 5 HOH A 75 323 166 HOH HOH . 
N 5 HOH A 76 324 167 HOH HOH . 
N 5 HOH A 77 325 168 HOH HOH . 
N 5 HOH A 78 326 169 HOH HOH . 
N 5 HOH A 79 327 170 HOH HOH . 
N 5 HOH A 80 328 171 HOH HOH . 
N 5 HOH A 81 329 172 HOH HOH . 
N 5 HOH A 82 330 176 HOH HOH . 
N 5 HOH A 83 331 177 HOH HOH . 
N 5 HOH A 84 332 178 HOH HOH . 
N 5 HOH A 85 333 180 HOH HOH . 
N 5 HOH A 86 334 181 HOH HOH . 
N 5 HOH A 87 335 183 HOH HOH . 
N 5 HOH A 88 336 184 HOH HOH . 
N 5 HOH A 89 337 185 HOH HOH . 
N 5 HOH A 90 338 186 HOH HOH . 
N 5 HOH A 91 339 187 HOH HOH . 
N 5 HOH A 92 340 188 HOH HOH . 
N 5 HOH A 93 341 189 HOH HOH . 
N 5 HOH A 94 342 195 HOH HOH . 
N 5 HOH A 95 343 196 HOH HOH . 
N 5 HOH A 96 344 197 HOH HOH . 
O 5 HOH B 1 244 3 HOH HOH . 
O 5 HOH B 2 245 7 HOH HOH . 
O 5 HOH B 3 246 9 HOH HOH . 
O 5 HOH B 4 247 12 HOH HOH . 
O 5 HOH B 5 248 14 HOH HOH . 
O 5 HOH B 6 249 15 HOH HOH . 
O 5 HOH B 7 250 17 HOH HOH . 
O 5 HOH B 8 251 20 HOH HOH . 
O 5 HOH B 9 252 22 HOH HOH . 
O 5 HOH B 10 253 24 HOH HOH . 
O 5 HOH B 11 254 25 HOH HOH . 
O 5 HOH B 12 255 27 HOH HOH . 
O 5 HOH B 13 256 30 HOH HOH . 
O 5 HOH B 14 257 33 HOH HOH . 
O 5 HOH B 15 258 35 HOH HOH . 
O 5 HOH B 16 259 37 HOH HOH . 
O 5 HOH B 17 260 39 HOH HOH . 
O 5 HOH B 18 261 44 HOH HOH . 
O 5 HOH B 19 262 48 HOH HOH . 
O 5 HOH B 20 263 49 HOH HOH . 
O 5 HOH B 21 264 50 HOH HOH . 
O 5 HOH B 22 265 51 HOH HOH . 
O 5 HOH B 23 266 52 HOH HOH . 
O 5 HOH B 24 267 53 HOH HOH . 
O 5 HOH B 25 268 56 HOH HOH . 
O 5 HOH B 26 269 61 HOH HOH . 
O 5 HOH B 27 270 62 HOH HOH . 
O 5 HOH B 28 271 63 HOH HOH . 
O 5 HOH B 29 272 64 HOH HOH . 
O 5 HOH B 30 273 66 HOH HOH . 
O 5 HOH B 31 274 67 HOH HOH . 
O 5 HOH B 32 275 80 HOH HOH . 
O 5 HOH B 33 276 84 HOH HOH . 
O 5 HOH B 34 277 85 HOH HOH . 
O 5 HOH B 35 278 93 HOH HOH . 
O 5 HOH B 36 279 98 HOH HOH . 
O 5 HOH B 37 280 99 HOH HOH . 
O 5 HOH B 38 281 104 HOH HOH . 
O 5 HOH B 39 282 105 HOH HOH . 
O 5 HOH B 40 283 106 HOH HOH . 
O 5 HOH B 41 284 107 HOH HOH . 
O 5 HOH B 42 285 110 HOH HOH . 
O 5 HOH B 43 286 112 HOH HOH . 
O 5 HOH B 44 287 115 HOH HOH . 
O 5 HOH B 45 288 116 HOH HOH . 
O 5 HOH B 46 289 117 HOH HOH . 
O 5 HOH B 47 290 118 HOH HOH . 
O 5 HOH B 48 291 119 HOH HOH . 
O 5 HOH B 49 292 120 HOH HOH . 
O 5 HOH B 50 293 121 HOH HOH . 
O 5 HOH B 51 294 129 HOH HOH . 
O 5 HOH B 52 295 132 HOH HOH . 
O 5 HOH B 53 296 133 HOH HOH . 
O 5 HOH B 54 297 138 HOH HOH . 
O 5 HOH B 55 298 139 HOH HOH . 
O 5 HOH B 56 299 140 HOH HOH . 
O 5 HOH B 57 300 141 HOH HOH . 
O 5 HOH B 58 301 151 HOH HOH . 
O 5 HOH B 59 302 152 HOH HOH . 
O 5 HOH B 60 303 153 HOH HOH . 
O 5 HOH B 61 304 155 HOH HOH . 
O 5 HOH B 62 305 156 HOH HOH . 
O 5 HOH B 63 306 159 HOH HOH . 
O 5 HOH B 64 307 160 HOH HOH . 
O 5 HOH B 65 308 161 HOH HOH . 
O 5 HOH B 66 309 162 HOH HOH . 
O 5 HOH B 67 310 163 HOH HOH . 
O 5 HOH B 68 311 164 HOH HOH . 
O 5 HOH B 69 312 173 HOH HOH . 
O 5 HOH B 70 313 174 HOH HOH . 
O 5 HOH B 71 314 179 HOH HOH . 
O 5 HOH B 72 315 182 HOH HOH . 
O 5 HOH B 73 316 190 HOH HOH . 
O 5 HOH B 74 317 191 HOH HOH . 
O 5 HOH B 75 318 192 HOH HOH . 
O 5 HOH B 76 319 193 HOH HOH . 
O 5 HOH B 77 320 194 HOH HOH . 
O 5 HOH B 78 321 198 HOH HOH . 
O 5 HOH B 79 322 199 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 56.89 37.809 5.649 1 65.74 ? C1 GOL 246 A 1 
HETATM 2 O O1 GOL . . . H 3 55.683 37.126 5.39 1 59.84 ? O1 GOL 246 A 1 
HETATM 3 C C2 GOL . . . H 3 56.705 38.72 6.854 1 68.43 ? C2 GOL 246 A 1 
HETATM 4 O O2 GOL . . . H 3 55.874 39.804 6.48 1 66 ? O2 GOL 246 A 1 
HETATM 5 C C3 GOL . . . H 3 58.071 39.209 7.337 1 69.72 ? C3 GOL 246 A 1 
HETATM 6 O O3 GOL . . . H 3 58.898 38.107 7.668 1 65.67 ? O3 GOL 246 A 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#