data_3UBR # _model_server_result.job_id XARnJHClfyIwGvGS16QjSA _model_server_result.datetime_utc '2024-11-12 23:06:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ubr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":476}' # _entry.id 3UBR # _exptl.entry_id 3UBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UBR _cell.length_a 51.5 _cell.length_b 95.9 _cell.length_c 223.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 168 A CYS 199 1_555 E CAB HEC . A HEC 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? covale ? covale2 A SG CYS 244 A CYS 275 1_555 F CAB HEC . A HEC 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? covale ? covale3 A SG CYS 276 A CYS 307 1_555 G CAB HEC . A HEC 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? covale ? covale4 B SG CYS 91 B CYS 122 1_555 I CAC HEC . B HEC 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? covale ? covale5 B SG CYS 126 B CYS 157 1_555 J CAB HEC . B HEC 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? covale ? covale6 B SG CYS 168 B CYS 199 1_555 K CAB HEC . B HEC 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale7 B SG CYS 244 B CYS 275 1_555 L CAB HEC . B HEC 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc1 A NE2 HIS 60 A HIS 91 1_555 E FE HEC . A HEC 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc2 A NZ LYS 92 A LYS 123 1_555 C FE HEC . A HEC 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A NE2 HIS 130 A HIS 161 1_555 D FE HEC . A HEC 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc4 A NE2 HIS 172 A HIS 203 1_555 E FE HEC . A HEC 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc5 A OE2 GLU 174 A GLU 205 1_555 H CA CA . A CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc6 A OE1 GLU 174 A GLU 205 1_555 H CA CA . A CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc7 A O TYR 175 A TYR 206 1_555 H CA CA . A CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc8 A O LYS 223 A LYS 254 1_555 H CA CA . A CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc9 A OE1 GLN 225 A GLN 256 1_555 H CA CA . A CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc10 A NE2 HIS 237 A HIS 268 1_555 G FE HEC . A HEC 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc11 A NE2 HIS 248 A HIS 279 1_555 F FE HEC . A HEC 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc12 A NE2 HIS 263 A HIS 294 1_555 D FE HEC . A HEC 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc13 A NE2 HIS 280 A HIS 311 1_555 G FE HEC . A HEC 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc14 A NE2 HIS 355 A HIS 386 1_555 F FE HEC . A HEC 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc15 C FE HEC . A HEC 471 1_555 O O HOH . A HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc16 B NE2 HIS 60 B HIS 91 1_555 K FE HEC . B HEC 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc17 B NZ LYS 92 B LYS 123 1_555 I FE HEC . B HEC 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc18 B NE2 HIS 130 B HIS 161 1_555 J FE HEC . B HEC 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc19 B NE2 HIS 172 B HIS 203 1_555 K FE HEC . B HEC 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc20 B OE2 GLU 174 B GLU 205 1_555 N CA CA . B CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc21 B OE1 GLU 174 B GLU 205 1_555 N CA CA . B CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc22 B O TYR 175 B TYR 206 1_555 N CA CA . B CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc23 B O LYS 223 B LYS 254 1_555 N CA CA . B CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc24 B OE1 GLN 225 B GLN 256 1_555 N CA CA . B CA 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc25 B NE2 HIS 237 B HIS 268 1_555 M FE HEC . B HEC 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc26 B NE2 HIS 248 B HIS 279 1_555 L FE HEC . B HEC 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc27 B NE2 HIS 263 B HIS 294 1_555 J FE HEC . B HEC 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc28 B NE2 HIS 280 B HIS 311 1_555 M FE HEC . B HEC 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc29 B NE2 HIS 355 B HIS 386 1_555 L FE HEC . B HEC 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc30 I FE HEC . B HEC 471 1_555 P O HOH . B HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc31 N CA CA . B CA 476 1_555 P O HOH . B HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3UBR _atom_sites.fract_transf_matrix[1][1] 0.019417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 471 471 HEC HEC . D 2 HEC A 1 472 472 HEC HEC . E 2 HEC A 1 473 473 HEC HEC . F 2 HEC A 1 474 474 HEC HEC . G 2 HEC A 1 475 475 HEC HEC . H 3 CA A 1 476 476 CA CA . I 2 HEC B 1 471 471 HEC HEC . J 2 HEC B 1 472 472 HEC HEC . K 2 HEC B 1 473 473 HEC HEC . L 2 HEC B 1 474 474 HEC HEC . M 2 HEC B 1 475 475 HEC HEC . N 3 CA B 1 476 476 CA CA . O 4 HOH A 1 1 1 HOH HOH . O 4 HOH A 2 2 2 HOH HOH . O 4 HOH A 3 3 3 HOH HOH . O 4 HOH A 4 5 5 HOH HOH . O 4 HOH A 5 7 7 HOH HOH . O 4 HOH A 6 11 11 HOH HOH . O 4 HOH A 7 12 12 HOH HOH . O 4 HOH A 8 15 15 HOH HOH . O 4 HOH A 9 17 17 HOH HOH . O 4 HOH A 10 19 19 HOH HOH . O 4 HOH A 11 20 20 HOH HOH . O 4 HOH A 12 22 22 HOH HOH . O 4 HOH A 13 23 23 HOH HOH . O 4 HOH A 14 24 24 HOH HOH . O 4 HOH A 15 25 25 HOH HOH . O 4 HOH A 16 26 26 HOH HOH . O 4 HOH A 17 27 27 HOH HOH . O 4 HOH A 18 28 28 HOH HOH . O 4 HOH A 19 477 32 HOH HOH . O 4 HOH A 20 478 33 HOH HOH . O 4 HOH A 21 479 36 HOH HOH . O 4 HOH A 22 480 37 HOH HOH . O 4 HOH A 23 481 41 HOH HOH . O 4 HOH A 24 482 42 HOH HOH . O 4 HOH A 25 483 43 HOH HOH . O 4 HOH A 26 484 44 HOH HOH . O 4 HOH A 27 485 48 HOH HOH . O 4 HOH A 28 486 50 HOH HOH . O 4 HOH A 29 487 51 HOH HOH . O 4 HOH A 30 488 53 HOH HOH . O 4 HOH A 31 489 55 HOH HOH . O 4 HOH A 32 490 63 HOH HOH . O 4 HOH A 33 491 67 HOH HOH . O 4 HOH A 34 492 68 HOH HOH . O 4 HOH A 35 493 69 HOH HOH . O 4 HOH A 36 494 70 HOH HOH . O 4 HOH A 37 495 71 HOH HOH . O 4 HOH A 38 496 72 HOH HOH . O 4 HOH A 39 497 75 HOH HOH . O 4 HOH A 40 498 76 HOH HOH . O 4 HOH A 41 499 77 HOH HOH . O 4 HOH A 42 500 78 HOH HOH . O 4 HOH A 43 501 79 HOH HOH . O 4 HOH A 44 502 80 HOH HOH . O 4 HOH A 45 503 81 HOH HOH . O 4 HOH A 46 504 82 HOH HOH . O 4 HOH A 47 505 83 HOH HOH . O 4 HOH A 48 506 84 HOH HOH . O 4 HOH A 49 507 86 HOH HOH . O 4 HOH A 50 508 88 HOH HOH . O 4 HOH A 51 509 90 HOH HOH . O 4 HOH A 52 510 91 HOH HOH . O 4 HOH A 53 511 92 HOH HOH . O 4 HOH A 54 512 93 HOH HOH . O 4 HOH A 55 513 94 HOH HOH . O 4 HOH A 56 514 95 HOH HOH . O 4 HOH A 57 515 97 HOH HOH . O 4 HOH A 58 516 98 HOH HOH . O 4 HOH A 59 517 99 HOH HOH . O 4 HOH A 60 518 100 HOH HOH . O 4 HOH A 61 519 102 HOH HOH . O 4 HOH A 62 520 103 HOH HOH . O 4 HOH A 63 521 104 HOH HOH . O 4 HOH A 64 522 106 HOH HOH . O 4 HOH A 65 523 109 HOH HOH . O 4 HOH A 66 524 110 HOH HOH . O 4 HOH A 67 525 111 HOH HOH . O 4 HOH A 68 526 117 HOH HOH . O 4 HOH A 69 527 120 HOH HOH . O 4 HOH A 70 528 121 HOH HOH . O 4 HOH A 71 529 123 HOH HOH . O 4 HOH A 72 530 124 HOH HOH . O 4 HOH A 73 531 126 HOH HOH . O 4 HOH A 74 532 129 HOH HOH . O 4 HOH A 75 533 134 HOH HOH . O 4 HOH A 76 534 136 HOH HOH . O 4 HOH A 77 535 139 HOH HOH . O 4 HOH A 78 536 142 HOH HOH . O 4 HOH A 79 537 143 HOH HOH . O 4 HOH A 80 538 144 HOH HOH . O 4 HOH A 81 539 147 HOH HOH . O 4 HOH A 82 540 149 HOH HOH . O 4 HOH A 83 541 150 HOH HOH . O 4 HOH A 84 542 153 HOH HOH . O 4 HOH A 85 543 155 HOH HOH . P 4 HOH B 1 4 4 HOH HOH . P 4 HOH B 2 6 6 HOH HOH . P 4 HOH B 3 8 8 HOH HOH . P 4 HOH B 4 9 9 HOH HOH . P 4 HOH B 5 10 10 HOH HOH . P 4 HOH B 6 13 13 HOH HOH . P 4 HOH B 7 14 14 HOH HOH . P 4 HOH B 8 16 16 HOH HOH . P 4 HOH B 9 18 18 HOH HOH . P 4 HOH B 10 21 21 HOH HOH . P 4 HOH B 11 29 29 HOH HOH . P 4 HOH B 12 30 30 HOH HOH . P 4 HOH B 13 31 31 HOH HOH . P 4 HOH B 14 477 34 HOH HOH . P 4 HOH B 15 478 35 HOH HOH . P 4 HOH B 16 479 38 HOH HOH . P 4 HOH B 17 480 39 HOH HOH . P 4 HOH B 18 481 40 HOH HOH . P 4 HOH B 19 482 45 HOH HOH . P 4 HOH B 20 483 46 HOH HOH . P 4 HOH B 21 484 47 HOH HOH . P 4 HOH B 22 485 49 HOH HOH . P 4 HOH B 23 486 52 HOH HOH . P 4 HOH B 24 487 54 HOH HOH . P 4 HOH B 25 488 56 HOH HOH . P 4 HOH B 26 489 57 HOH HOH . P 4 HOH B 27 490 58 HOH HOH . P 4 HOH B 28 491 59 HOH HOH . P 4 HOH B 29 492 60 HOH HOH . P 4 HOH B 30 493 61 HOH HOH . P 4 HOH B 31 494 62 HOH HOH . P 4 HOH B 32 495 64 HOH HOH . P 4 HOH B 33 496 65 HOH HOH . P 4 HOH B 34 497 66 HOH HOH . P 4 HOH B 35 498 73 HOH HOH . P 4 HOH B 36 499 74 HOH HOH . P 4 HOH B 37 500 85 HOH HOH . P 4 HOH B 38 501 87 HOH HOH . P 4 HOH B 39 502 89 HOH HOH . P 4 HOH B 40 503 96 HOH HOH . P 4 HOH B 41 504 101 HOH HOH . P 4 HOH B 42 505 105 HOH HOH . P 4 HOH B 43 506 107 HOH HOH . P 4 HOH B 44 507 108 HOH HOH . P 4 HOH B 45 508 112 HOH HOH . P 4 HOH B 46 509 113 HOH HOH . P 4 HOH B 47 510 114 HOH HOH . P 4 HOH B 48 511 115 HOH HOH . P 4 HOH B 49 512 116 HOH HOH . P 4 HOH B 50 513 118 HOH HOH . P 4 HOH B 51 514 119 HOH HOH . P 4 HOH B 52 515 122 HOH HOH . P 4 HOH B 53 516 125 HOH HOH . P 4 HOH B 54 517 127 HOH HOH . P 4 HOH B 55 518 128 HOH HOH . P 4 HOH B 56 519 130 HOH HOH . P 4 HOH B 57 520 131 HOH HOH . P 4 HOH B 58 521 132 HOH HOH . P 4 HOH B 59 522 133 HOH HOH . P 4 HOH B 60 523 135 HOH HOH . P 4 HOH B 61 524 137 HOH HOH . P 4 HOH B 62 525 138 HOH HOH . P 4 HOH B 63 526 140 HOH HOH . P 4 HOH B 64 527 141 HOH HOH . P 4 HOH B 65 528 145 HOH HOH . P 4 HOH B 66 529 146 HOH HOH . P 4 HOH B 67 530 148 HOH HOH . P 4 HOH B 68 531 151 HOH HOH . P 4 HOH B 69 532 152 HOH HOH . P 4 HOH B 70 533 154 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 3 _atom_site.Cartn_x 31.362 _atom_site.Cartn_y 8.901 _atom_site.Cartn_z -35.952 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 476 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #