data_3UC5 # _model_server_result.job_id iooS3XsxcJyvQqkfW03xbw _model_server_result.datetime_utc '2024-11-14 15:14:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1440}' # _entry.id 3UC5 # _exptl.entry_id 3UC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UC5 _cell.length_a 99.909 _cell.length_b 99.909 _cell.length_c 114.419 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 49.9545 -86.523732 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 99.909 0 0 4 'crystal symmetry operation' 10_545 y+2/3,x-2/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 99.909 -57.682488 38.139667 5 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 -57.682488 38.139667 6 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 49.9545 28.841244 38.139667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 80 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 80 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 80 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 80 _struct_conn.ptnr2_symmetry 5_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.027 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3UC5 _atom_sites.fract_transf_matrix[1][1] 0.010009 _atom_sites.fract_transf_matrix[1][2] 0.005779 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1440 1440 ATP ATP . C 3 HOH A 1 158 1 HOH HOH . C 3 HOH A 2 159 2 HOH HOH . C 3 HOH A 3 160 3 HOH HOH . C 3 HOH A 4 161 4 HOH HOH . C 3 HOH A 5 162 8 HOH HOH . C 3 HOH A 6 163 9 HOH HOH . C 3 HOH A 7 164 11 HOH HOH . C 3 HOH A 8 165 12 HOH HOH . C 3 HOH A 9 166 13 HOH HOH . C 3 HOH A 10 167 14 HOH HOH . C 3 HOH A 11 168 15 HOH HOH . C 3 HOH A 12 169 17 HOH HOH . C 3 HOH A 13 170 18 HOH HOH . C 3 HOH A 14 171 19 HOH HOH . C 3 HOH A 15 172 21 HOH HOH . C 3 HOH A 16 173 23 HOH HOH . C 3 HOH A 17 174 25 HOH HOH . C 3 HOH A 18 175 28 HOH HOH . C 3 HOH A 19 176 30 HOH HOH . C 3 HOH A 20 177 31 HOH HOH . C 3 HOH A 21 178 33 HOH HOH . C 3 HOH A 22 179 36 HOH HOH . C 3 HOH A 23 180 42 HOH HOH . C 3 HOH A 24 181 43 HOH HOH . C 3 HOH A 25 182 46 HOH HOH . C 3 HOH A 26 183 48 HOH HOH . C 3 HOH A 27 184 51 HOH HOH . C 3 HOH A 28 185 52 HOH HOH . C 3 HOH A 29 186 54 HOH HOH . C 3 HOH A 30 187 55 HOH HOH . C 3 HOH A 31 188 57 HOH HOH . C 3 HOH A 32 189 59 HOH HOH . C 3 HOH A 33 190 60 HOH HOH . C 3 HOH A 34 191 61 HOH HOH . C 3 HOH A 35 192 62 HOH HOH . C 3 HOH A 36 193 67 HOH HOH . C 3 HOH A 37 194 71 HOH HOH . C 3 HOH A 38 195 72 HOH HOH . C 3 HOH A 39 196 1 HOH HOH . C 3 HOH A 40 197 2 HOH HOH . C 3 HOH A 41 198 3 HOH HOH . C 3 HOH A 42 199 4 HOH HOH . C 3 HOH A 43 200 6 HOH HOH . C 3 HOH A 44 201 2 HOH HOH . C 3 HOH A 45 202 4 HOH HOH . C 3 HOH A 46 203 5 HOH HOH . C 3 HOH A 47 204 6 HOH HOH . C 3 HOH A 48 205 7 HOH HOH . C 3 HOH A 49 206 8 HOH HOH . C 3 HOH A 50 207 1 HOH HOH . C 3 HOH A 51 208 2 HOH HOH . C 3 HOH A 52 209 3 HOH HOH . C 3 HOH A 53 210 4 HOH HOH . C 3 HOH A 54 211 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 39.222 -24.679 4.505 1 57.11 ? PG ATP 1440 A 1 HETATM 2 O O1G ATP . . . B 2 38.829 -25.05 5.919 1 59.07 ? O1G ATP 1440 A 1 HETATM 3 O O2G ATP . . . B 2 38.526 -25.471 3.446 1 58.45 ? O2G ATP 1440 A 1 HETATM 4 O O3G ATP . . . B 2 40.699 -24.459 4.288 1 60.8 ? O3G ATP 1440 A 1 HETATM 5 P PB ATP . . . B 2 38.481 -22.226 5.528 1 56.88 ? PB ATP 1440 A 1 HETATM 6 O O1B ATP . . . B 2 37.023 -22.211 5.935 1 56.4 ? O1B ATP 1440 A 1 HETATM 7 O O2B ATP . . . B 2 39.548 -22.557 6.543 1 58.88 ? O2B ATP 1440 A 1 HETATM 8 O O3B ATP . . . B 2 38.59 -23.234 4.285 1 59.46 ? O3B ATP 1440 A 1 HETATM 9 P PA ATP . . . B 2 38.434 -19.433 4.605 1 49.93 ? PA ATP 1440 A 1 HETATM 10 O O1A ATP . . . B 2 37.146 -19.462 3.799 1 52.94 ? O1A ATP 1440 A 1 HETATM 11 O O2A ATP . . . B 2 39.563 -18.561 4.085 1 50 ? O2A ATP 1440 A 1 HETATM 12 O O3A ATP . . . B 2 39.026 -20.92 4.72 1 55.61 ? O3A ATP 1440 A 1 HETATM 13 O O5' ATP . . . B 2 38.139 -18.997 6.129 1 48.97 ? O5' ATP 1440 A 1 HETATM 14 C C5' ATP . . . B 2 38.172 -17.625 6.525 1 45.94 ? C5' ATP 1440 A 1 HETATM 15 C C4' ATP . . . B 2 38.284 -17.555 8.053 1 46.3 ? C4' ATP 1440 A 1 HETATM 16 O O4' ATP . . . B 2 37.214 -18.283 8.665 1 47.4 ? O4' ATP 1440 A 1 HETATM 17 C C3' ATP . . . B 2 39.57 -18.173 8.581 1 45.5 ? C3' ATP 1440 A 1 HETATM 18 O O3' ATP . . . B 2 40.015 -17.411 9.728 1 47.76 ? O3' ATP 1440 A 1 HETATM 19 C C2' ATP . . . B 2 39.122 -19.506 9.135 1 46.04 ? C2' ATP 1440 A 1 HETATM 20 O O2' ATP . . . B 2 39.993 -19.92 10.179 1 43.38 ? O2' ATP 1440 A 1 HETATM 21 C C1' ATP . . . B 2 37.754 -19.144 9.676 1 43.68 ? C1' ATP 1440 A 1 HETATM 22 N N9 ATP . . . B 2 36.846 -20.287 9.912 1 45.41 ? N9 ATP 1440 A 1 HETATM 23 C C8 ATP . . . B 2 36.507 -21.263 9.045 1 44.82 ? C8 ATP 1440 A 1 HETATM 24 N N7 ATP . . . B 2 35.629 -22.125 9.611 1 44.65 ? N7 ATP 1440 A 1 HETATM 25 C C5 ATP . . . B 2 35.387 -21.696 10.86 1 46.11 ? C5 ATP 1440 A 1 HETATM 26 C C6 ATP . . . B 2 34.56 -22.146 12.001 1 46.33 ? C6 ATP 1440 A 1 HETATM 27 N N6 ATP . . . B 2 33.793 -23.26 11.91 1 46.59 ? N6 ATP 1440 A 1 HETATM 28 N N1 ATP . . . B 2 34.602 -21.406 13.137 1 47.47 ? N1 ATP 1440 A 1 HETATM 29 C C2 ATP . . . B 2 35.367 -20.304 13.247 1 46.63 ? C2 ATP 1440 A 1 HETATM 30 N N3 ATP . . . B 2 36.141 -19.839 12.245 1 47.19 ? N3 ATP 1440 A 1 HETATM 31 C C4 ATP . . . B 2 36.192 -20.483 11.053 1 45.7 ? C4 ATP 1440 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 210 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #