data_3UCL # _model_server_result.job_id 4oDlLc0WpcDol6U8RU2XEA _model_server_result.datetime_utc '2024-11-27 03:37:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ucl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":542}' # _entry.id 3UCL # _exptl.entry_id 3UCL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UCL _cell.length_a 55.538 _cell.length_b 67.105 _cell.length_c 131.409 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 345 n n PA O2A NAP sing 346 n n PA O5B NAP sing 347 n n PA O3 NAP sing 348 n n O2A HOA2 NAP sing 349 n n O5B C5B NAP sing 350 n n C5B C4B NAP sing 351 n n C5B H51A NAP sing 352 n n C5B H52A NAP sing 353 n n C4B O4B NAP sing 354 n n C4B C3B NAP sing 355 n n C4B H4B NAP sing 356 n n O4B C1B NAP sing 357 n n C3B O3B NAP sing 358 n n C3B C2B NAP sing 359 n n C3B H3B NAP sing 360 n n O3B HO3A NAP sing 361 n n C2B O2B NAP sing 362 n n C2B C1B NAP sing 363 n n C2B H2B NAP sing 364 n n O2B P2B NAP sing 365 n n C1B N9A NAP sing 366 n n C1B H1B NAP sing 367 n n N9A C8A NAP sing 368 n y N9A C4A NAP sing 369 n y C8A N7A NAP doub 370 n y C8A H8A NAP sing 371 n n N7A C5A NAP sing 372 n y C5A C6A NAP sing 373 n y C5A C4A NAP doub 374 n y C6A N6A NAP sing 375 n n C6A N1A NAP doub 376 n y N6A H61A NAP sing 377 n n N6A H62A NAP sing 378 n n N1A C2A NAP sing 379 n y C2A N3A NAP doub 380 n y C2A H2A NAP sing 381 n n N3A C4A NAP sing 382 n y O3 PN NAP sing 383 n n PN O1N NAP doub 384 n n PN O2N NAP sing 385 n n PN O5D NAP sing 386 n n O5D C5D NAP sing 387 n n C5D C4D NAP sing 388 n n C5D H51N NAP sing 389 n n C5D H52N NAP sing 390 n n C4D O4D NAP sing 391 n n C4D C3D NAP sing 392 n n C4D H4D NAP sing 393 n n O4D C1D NAP sing 394 n n C3D O3D NAP sing 395 n n C3D C2D NAP sing 396 n n C3D H3D NAP sing 397 n n O3D HO3N NAP sing 398 n n C2D O2D NAP sing 399 n n C2D C1D NAP sing 400 n n C2D H2D NAP sing 401 n n O2D HO2N NAP sing 402 n n C1D N1N NAP sing 403 n n C1D H1D NAP sing 404 n n N1N C2N NAP sing 405 n y N1N C6N NAP doub 406 n y C2N C3N NAP doub 407 n y C2N H2N NAP sing 408 n n C3N C7N NAP sing 409 n n C3N C4N NAP sing 410 n y C7N O7N NAP doub 411 n n C7N N7N NAP sing 412 n n N7N H71N NAP sing 413 n n N7N H72N NAP sing 414 n n C4N C5N NAP doub 415 n y C4N H4N NAP sing 416 n n C5N C6N NAP sing 417 n y C5N H5N NAP sing 418 n n C6N H6N NAP sing 419 n n P2B O1X NAP doub 420 n n P2B O2X NAP sing 421 n n P2B O3X NAP sing 422 n n O2X HOP2 NAP sing 423 n n O3X HOP3 NAP sing 424 n n # _atom_sites.entry_id 3UCL _atom_sites.fract_transf_matrix[1][1] 0.018006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 541 541 FAD FAD . C 3 NAP A 1 542 542 NAP NAP . D 4 CYH A 1 543 600 CYH CYH . E 5 HOH A 1 544 1 HOH HOH . E 5 HOH A 2 545 2 HOH HOH . E 5 HOH A 3 546 3 HOH HOH . E 5 HOH A 4 547 4 HOH HOH . E 5 HOH A 5 548 5 HOH HOH . E 5 HOH A 6 549 6 HOH HOH . E 5 HOH A 7 550 7 HOH HOH . E 5 HOH A 8 551 8 HOH HOH . E 5 HOH A 9 552 9 HOH HOH . E 5 HOH A 10 553 10 HOH HOH . E 5 HOH A 11 554 11 HOH HOH . E 5 HOH A 12 555 12 HOH HOH . E 5 HOH A 13 556 13 HOH HOH . E 5 HOH A 14 557 14 HOH HOH . E 5 HOH A 15 558 15 HOH HOH . E 5 HOH A 16 559 16 HOH HOH . E 5 HOH A 17 560 17 HOH HOH . E 5 HOH A 18 561 18 HOH HOH . E 5 HOH A 19 562 19 HOH HOH . E 5 HOH A 20 563 20 HOH HOH . E 5 HOH A 21 564 21 HOH HOH . E 5 HOH A 22 565 22 HOH HOH . E 5 HOH A 23 566 23 HOH HOH . E 5 HOH A 24 567 24 HOH HOH . E 5 HOH A 25 568 25 HOH HOH . E 5 HOH A 26 569 26 HOH HOH . E 5 HOH A 27 570 27 HOH HOH . E 5 HOH A 28 571 28 HOH HOH . E 5 HOH A 29 572 29 HOH HOH . E 5 HOH A 30 573 30 HOH HOH . E 5 HOH A 31 574 31 HOH HOH . E 5 HOH A 32 575 32 HOH HOH . E 5 HOH A 33 576 33 HOH HOH . E 5 HOH A 34 577 34 HOH HOH . E 5 HOH A 35 578 35 HOH HOH . E 5 HOH A 36 579 36 HOH HOH . E 5 HOH A 37 580 37 HOH HOH . E 5 HOH A 38 581 38 HOH HOH . E 5 HOH A 39 582 39 HOH HOH . E 5 HOH A 40 583 40 HOH HOH . E 5 HOH A 41 584 41 HOH HOH . E 5 HOH A 42 585 42 HOH HOH . E 5 HOH A 43 586 43 HOH HOH . E 5 HOH A 44 587 44 HOH HOH . E 5 HOH A 45 588 45 HOH HOH . E 5 HOH A 46 589 46 HOH HOH . E 5 HOH A 47 590 47 HOH HOH . E 5 HOH A 48 591 48 HOH HOH . E 5 HOH A 49 592 49 HOH HOH . E 5 HOH A 50 593 50 HOH HOH . E 5 HOH A 51 594 51 HOH HOH . E 5 HOH A 52 595 52 HOH HOH . E 5 HOH A 53 596 53 HOH HOH . E 5 HOH A 54 597 54 HOH HOH . E 5 HOH A 55 598 55 HOH HOH . E 5 HOH A 56 599 56 HOH HOH . E 5 HOH A 57 600 57 HOH HOH . E 5 HOH A 58 601 58 HOH HOH . E 5 HOH A 59 602 59 HOH HOH . E 5 HOH A 60 603 60 HOH HOH . E 5 HOH A 61 604 61 HOH HOH . E 5 HOH A 62 605 62 HOH HOH . E 5 HOH A 63 606 63 HOH HOH . E 5 HOH A 64 607 64 HOH HOH . E 5 HOH A 65 608 65 HOH HOH . E 5 HOH A 66 609 66 HOH HOH . E 5 HOH A 67 610 67 HOH HOH . E 5 HOH A 68 611 68 HOH HOH . E 5 HOH A 69 612 69 HOH HOH . E 5 HOH A 70 613 70 HOH HOH . E 5 HOH A 71 614 71 HOH HOH . E 5 HOH A 72 615 72 HOH HOH . E 5 HOH A 73 616 73 HOH HOH . E 5 HOH A 74 617 74 HOH HOH . E 5 HOH A 75 618 75 HOH HOH . E 5 HOH A 76 619 76 HOH HOH . E 5 HOH A 77 620 77 HOH HOH . E 5 HOH A 78 621 78 HOH HOH . E 5 HOH A 79 622 79 HOH HOH . E 5 HOH A 80 623 80 HOH HOH . E 5 HOH A 81 624 81 HOH HOH . E 5 HOH A 82 625 82 HOH HOH . E 5 HOH A 83 626 83 HOH HOH . E 5 HOH A 84 627 84 HOH HOH . E 5 HOH A 85 628 85 HOH HOH . E 5 HOH A 86 629 86 HOH HOH . E 5 HOH A 87 630 87 HOH HOH . E 5 HOH A 88 631 88 HOH HOH . E 5 HOH A 89 632 89 HOH HOH . E 5 HOH A 90 633 90 HOH HOH . E 5 HOH A 91 634 91 HOH HOH . E 5 HOH A 92 635 92 HOH HOH . E 5 HOH A 93 636 93 HOH HOH . E 5 HOH A 94 637 94 HOH HOH . E 5 HOH A 95 638 95 HOH HOH . E 5 HOH A 96 639 96 HOH HOH . E 5 HOH A 97 640 97 HOH HOH . E 5 HOH A 98 641 98 HOH HOH . E 5 HOH A 99 642 99 HOH HOH . E 5 HOH A 100 643 100 HOH HOH . E 5 HOH A 101 644 101 HOH HOH . E 5 HOH A 102 645 102 HOH HOH . E 5 HOH A 103 646 103 HOH HOH . E 5 HOH A 104 647 104 HOH HOH . E 5 HOH A 105 648 105 HOH HOH . E 5 HOH A 106 649 106 HOH HOH . E 5 HOH A 107 650 107 HOH HOH . E 5 HOH A 108 651 108 HOH HOH . E 5 HOH A 109 652 109 HOH HOH . E 5 HOH A 110 653 110 HOH HOH . E 5 HOH A 111 654 111 HOH HOH . E 5 HOH A 112 655 112 HOH HOH . E 5 HOH A 113 656 113 HOH HOH . E 5 HOH A 114 657 114 HOH HOH . E 5 HOH A 115 658 115 HOH HOH . E 5 HOH A 116 659 116 HOH HOH . E 5 HOH A 117 660 117 HOH HOH . E 5 HOH A 118 661 118 HOH HOH . E 5 HOH A 119 662 119 HOH HOH . E 5 HOH A 120 663 120 HOH HOH . E 5 HOH A 121 664 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 22.782 -2.365 15.281 1 29.35 ? PA NAP 542 A 1 HETATM 2 O O1A NAP . . . C 3 21.889 -2.447 16.448 1 29.46 ? O1A NAP 542 A 1 HETATM 3 O O2A NAP . . . C 3 23.762 -1.037 15.161 1 31.46 ? O2A NAP 542 A 1 HETATM 4 O O5B NAP . . . C 3 23.817 -3.585 15.418 1 30.06 ? O5B NAP 542 A 1 HETATM 5 C C5B NAP . . . C 3 24.81 -3.747 14.399 1 25.85 ? C5B NAP 542 A 1 HETATM 6 C C4B NAP . . . C 3 25.466 -5.107 14.562 1 26.01 ? C4B NAP 542 A 1 HETATM 7 O O4B NAP . . . C 3 26.581 -5.222 13.645 1 25.59 ? O4B NAP 542 A 1 HETATM 8 C C3B NAP . . . C 3 26.045 -5.281 15.967 1 25.87 ? C3B NAP 542 A 1 HETATM 9 O O3B NAP . . . C 3 26.115 -6.699 16.256 1 21.42 ? O3B NAP 542 A 1 HETATM 10 C C2B NAP . . . C 3 27.437 -4.673 15.801 1 25.54 ? C2B NAP 542 A 1 HETATM 11 O O2B NAP . . . C 3 28.319 -5.278 16.736 1 26.59 ? O2B NAP 542 A 1 HETATM 12 C C1B NAP . . . C 3 27.792 -5.226 14.419 1 26.82 ? C1B NAP 542 A 1 HETATM 13 N N9A NAP . . . C 3 28.71 -4.405 13.711 1 26.39 ? N9A NAP 542 A 1 HETATM 14 C C8A NAP . . . C 3 28.604 -3.102 13.479 1 26.26 ? C8A NAP 542 A 1 HETATM 15 N N7A NAP . . . C 3 29.665 -2.708 12.766 1 25.87 ? N7A NAP 542 A 1 HETATM 16 C C5A NAP . . . C 3 30.44 -3.754 12.577 1 27.86 ? C5A NAP 542 A 1 HETATM 17 C C6A NAP . . . C 3 31.642 -3.949 11.925 1 29.49 ? C6A NAP 542 A 1 HETATM 18 N N6A NAP . . . C 3 32.243 -2.917 11.367 1 31.88 ? N6A NAP 542 A 1 HETATM 19 N N1A NAP . . . C 3 32.182 -5.183 11.887 1 30.37 ? N1A NAP 542 A 1 HETATM 20 C C2A NAP . . . C 3 31.58 -6.213 12.485 1 28.66 ? C2A NAP 542 A 1 HETATM 21 N N3A NAP . . . C 3 30.422 -6.064 13.101 1 28.35 ? N3A NAP 542 A 1 HETATM 22 C C4A NAP . . . C 3 29.828 -4.85 13.164 1 28.16 ? C4A NAP 542 A 1 HETATM 23 O O3 NAP . . . C 3 22.076 -2.38 13.753 1 31.57 ? O3 NAP 542 A 1 HETATM 24 P PN NAP . . . C 3 20.526 -2.825 13.399 1 36.05 ? PN NAP 542 A 1 HETATM 25 O O1N NAP . . . C 3 20.045 -3.66 14.526 1 35.84 ? O1N NAP 542 A 1 HETATM 26 O O2N NAP . . . C 3 20.647 -3.418 12.036 1 33.58 ? O2N NAP 542 A 1 HETATM 27 O O5D NAP . . . C 3 19.676 -1.358 13.231 1 40.16 ? O5D NAP 542 A 1 HETATM 28 C C5D NAP . . . C 3 18.527 -0.706 13.967 1 45.01 ? C5D NAP 542 A 1 HETATM 29 C C4D NAP . . . C 3 19 -0.019 15.305 1 50.1 ? C4D NAP 542 A 1 HETATM 30 O O4D NAP . . . C 3 18.632 1.373 15.708 1 52.34 ? O4D NAP 542 A 1 HETATM 31 C C3D NAP . . . C 3 18.424 -0.84 16.488 1 51.26 ? C3D NAP 542 A 1 HETATM 32 O O3D NAP . . . C 3 19.133 -2.118 16.608 1 52.55 ? O3D NAP 542 A 1 HETATM 33 C C2D NAP . . . C 3 18.608 0.11 17.694 1 52.07 ? C2D NAP 542 A 1 HETATM 34 O O2D NAP . . . C 3 19.552 -0.381 18.682 1 54.11 ? O2D NAP 542 A 1 HETATM 35 C C1D NAP . . . C 3 19.208 1.389 17.07 1 52.47 ? C1D NAP 542 A 1 HETATM 36 N N1N NAP . . . C 3 19.091 2.497 18.096 1 52 ? N1N NAP 542 A 1 HETATM 37 C C2N NAP . . . C 3 18.2 3.585 17.947 1 51.79 ? C2N NAP 542 A 1 HETATM 38 C C3N NAP . . . C 3 18.129 4.574 18.956 1 52.79 ? C3N NAP 542 A 1 HETATM 39 C C7N NAP . . . C 3 17.147 5.794 18.798 1 54.14 ? C7N NAP 542 A 1 HETATM 40 O O7N NAP . . . C 3 17.04 6.703 19.617 1 53.69 ? O7N NAP 542 A 1 HETATM 41 N N7N NAP . . . C 3 16.414 5.795 17.684 1 58 ? N7N NAP 542 A 1 HETATM 42 C C4N NAP . . . C 3 18.95 4.441 20.093 1 52.16 ? C4N NAP 542 A 1 HETATM 43 C C5N NAP . . . C 3 19.837 3.37 20.266 1 50.58 ? C5N NAP 542 A 1 HETATM 44 C C6N NAP . . . C 3 19.908 2.406 19.273 1 50.4 ? C6N NAP 542 A 1 HETATM 45 P P2B NAP . . . C 3 28.818 -4.593 18.123 1 26.01 ? P2B NAP 542 A 1 HETATM 46 O O1X NAP . . . C 3 27.835 -4.71 19.192 1 23.11 ? O1X NAP 542 A 1 HETATM 47 O O2X NAP . . . C 3 30.255 -5.321 18.451 1 26.5 ? O2X NAP 542 A 1 HETATM 48 O O3X NAP . . . C 3 29.205 -3.075 17.719 1 26.93 ? O3X NAP 542 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #