data_3UDI
#
_model_server_result.job_id            aunQ5cSdb27GmxIGYIBBnA 
_model_server_result.datetime_utc      '2024-11-02 14:33:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3udi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":998}' 
#
_entry.id    3UDI 
#
_exptl.entry_id    3UDI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              336.406 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OPEN FORM - PENICILLIN G' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UDI 
_cell.length_a            119 
_cell.length_b            242.68 
_cell.length_c            49.05 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UDI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 567 A CYS 575 1_555 A SG CYS 570 A CYS 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 B SG CYS 567 B CYS 575 1_555 B SG CYS 570 B CYS 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale 1.3900000000000001 covale1 B OG SER 426 B SER 434 1_555 D C7 PNM . B PNM 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? 
covale ? covale2 A OG SER 426 A SER 434 1_555 C C7 PNM . A PNM 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? 
#
_chem_comp.formula           'C16 H20 N2 O4 S' 
_chem_comp.formula_weight    336.406 
_chem_comp.id                PNM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OPEN FORM - PENICILLIN G' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3UDI 
_atom_sites.fract_transf_matrix[1][1]    0.008403 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004121 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PNM A 1 998 998 PNM PNM . 
D 2 PNM B 1 999 999 PNM PNM . 
E 3 HOH A 1 2 2 HOH HOH . 
E 3 HOH A 2 3 3 HOH HOH . 
E 3 HOH A 3 7 7 HOH HOH . 
E 3 HOH A 4 740 9 HOH HOH . 
E 3 HOH A 5 741 10 HOH HOH . 
E 3 HOH A 6 742 17 HOH HOH . 
E 3 HOH A 7 743 18 HOH HOH . 
E 3 HOH A 8 744 21 HOH HOH . 
E 3 HOH A 9 745 23 HOH HOH . 
E 3 HOH A 10 746 24 HOH HOH . 
E 3 HOH A 11 747 26 HOH HOH . 
E 3 HOH A 12 748 29 HOH HOH . 
E 3 HOH A 13 749 39 HOH HOH . 
E 3 HOH A 14 750 48 HOH HOH . 
E 3 HOH A 15 751 52 HOH HOH . 
E 3 HOH A 16 752 61 HOH HOH . 
E 3 HOH A 17 753 63 HOH HOH . 
E 3 HOH A 18 754 68 HOH HOH . 
E 3 HOH A 19 755 69 HOH HOH . 
E 3 HOH A 20 756 76 HOH HOH . 
E 3 HOH A 21 757 80 HOH HOH . 
E 3 HOH A 22 758 83 HOH HOH . 
E 3 HOH A 23 759 84 HOH HOH . 
E 3 HOH A 24 760 85 HOH HOH . 
E 3 HOH A 25 761 86 HOH HOH . 
E 3 HOH A 26 762 88 HOH HOH . 
E 3 HOH A 27 763 91 HOH HOH . 
E 3 HOH A 28 764 92 HOH HOH . 
E 3 HOH A 29 765 93 HOH HOH . 
E 3 HOH A 30 766 94 HOH HOH . 
E 3 HOH A 31 767 96 HOH HOH . 
E 3 HOH A 32 768 105 HOH HOH . 
E 3 HOH A 33 769 108 HOH HOH . 
E 3 HOH A 34 770 109 HOH HOH . 
E 3 HOH A 35 771 110 HOH HOH . 
E 3 HOH A 36 772 113 HOH HOH . 
E 3 HOH A 37 773 122 HOH HOH . 
E 3 HOH A 38 774 126 HOH HOH . 
E 3 HOH A 39 775 131 HOH HOH . 
E 3 HOH A 40 776 132 HOH HOH . 
E 3 HOH A 41 777 134 HOH HOH . 
E 3 HOH A 42 778 135 HOH HOH . 
E 3 HOH A 43 779 139 HOH HOH . 
E 3 HOH A 44 780 142 HOH HOH . 
E 3 HOH A 45 781 148 HOH HOH . 
E 3 HOH A 46 782 156 HOH HOH . 
E 3 HOH A 47 783 158 HOH HOH . 
E 3 HOH A 48 784 168 HOH HOH . 
E 3 HOH A 49 785 173 HOH HOH . 
E 3 HOH A 50 786 178 HOH HOH . 
E 3 HOH A 51 787 180 HOH HOH . 
E 3 HOH A 52 788 193 HOH HOH . 
E 3 HOH A 53 789 198 HOH HOH . 
E 3 HOH A 54 790 200 HOH HOH . 
E 3 HOH A 55 791 204 HOH HOH . 
E 3 HOH A 56 792 209 HOH HOH . 
E 3 HOH A 57 793 215 HOH HOH . 
E 3 HOH A 58 794 219 HOH HOH . 
E 3 HOH A 59 795 223 HOH HOH . 
E 3 HOH A 60 796 229 HOH HOH . 
E 3 HOH A 61 797 230 HOH HOH . 
E 3 HOH A 62 798 231 HOH HOH . 
E 3 HOH A 63 799 237 HOH HOH . 
E 3 HOH A 64 800 238 HOH HOH . 
E 3 HOH A 65 801 251 HOH HOH . 
E 3 HOH A 66 802 263 HOH HOH . 
E 3 HOH A 67 803 264 HOH HOH . 
E 3 HOH A 68 804 265 HOH HOH . 
E 3 HOH A 69 805 266 HOH HOH . 
E 3 HOH A 70 806 267 HOH HOH . 
E 3 HOH A 71 807 268 HOH HOH . 
E 3 HOH A 72 808 270 HOH HOH . 
E 3 HOH A 73 809 277 HOH HOH . 
E 3 HOH A 74 810 279 HOH HOH . 
E 3 HOH A 75 811 281 HOH HOH . 
E 3 HOH A 76 812 286 HOH HOH . 
E 3 HOH A 77 813 287 HOH HOH . 
F 3 HOH B 1 1 1 HOH HOH . 
F 3 HOH B 2 4 4 HOH HOH . 
F 3 HOH B 3 6 6 HOH HOH . 
F 3 HOH B 4 8 8 HOH HOH . 
F 3 HOH B 5 740 11 HOH HOH . 
F 3 HOH B 6 741 12 HOH HOH . 
F 3 HOH B 7 742 13 HOH HOH . 
F 3 HOH B 8 743 14 HOH HOH . 
F 3 HOH B 9 744 15 HOH HOH . 
F 3 HOH B 10 745 16 HOH HOH . 
F 3 HOH B 11 746 19 HOH HOH . 
F 3 HOH B 12 747 20 HOH HOH . 
F 3 HOH B 13 748 22 HOH HOH . 
F 3 HOH B 14 749 25 HOH HOH . 
F 3 HOH B 15 750 27 HOH HOH . 
F 3 HOH B 16 751 28 HOH HOH . 
F 3 HOH B 17 752 30 HOH HOH . 
F 3 HOH B 18 753 31 HOH HOH . 
F 3 HOH B 19 754 32 HOH HOH . 
F 3 HOH B 20 755 33 HOH HOH . 
F 3 HOH B 21 756 34 HOH HOH . 
F 3 HOH B 22 757 35 HOH HOH . 
F 3 HOH B 23 758 36 HOH HOH . 
F 3 HOH B 24 759 37 HOH HOH . 
F 3 HOH B 25 760 38 HOH HOH . 
F 3 HOH B 26 761 40 HOH HOH . 
F 3 HOH B 27 762 41 HOH HOH . 
F 3 HOH B 28 763 42 HOH HOH . 
F 3 HOH B 29 764 43 HOH HOH . 
F 3 HOH B 30 765 44 HOH HOH . 
F 3 HOH B 31 766 45 HOH HOH . 
F 3 HOH B 32 767 46 HOH HOH . 
F 3 HOH B 33 768 47 HOH HOH . 
F 3 HOH B 34 769 49 HOH HOH . 
F 3 HOH B 35 770 50 HOH HOH . 
F 3 HOH B 36 771 51 HOH HOH . 
F 3 HOH B 37 772 53 HOH HOH . 
F 3 HOH B 38 773 54 HOH HOH . 
F 3 HOH B 39 774 56 HOH HOH . 
F 3 HOH B 40 775 57 HOH HOH . 
F 3 HOH B 41 776 58 HOH HOH . 
F 3 HOH B 42 777 59 HOH HOH . 
F 3 HOH B 43 778 64 HOH HOH . 
F 3 HOH B 44 779 65 HOH HOH . 
F 3 HOH B 45 780 66 HOH HOH . 
F 3 HOH B 46 781 67 HOH HOH . 
F 3 HOH B 47 782 71 HOH HOH . 
F 3 HOH B 48 783 72 HOH HOH . 
F 3 HOH B 49 784 73 HOH HOH . 
F 3 HOH B 50 785 75 HOH HOH . 
F 3 HOH B 51 786 77 HOH HOH . 
F 3 HOH B 52 787 78 HOH HOH . 
F 3 HOH B 53 788 81 HOH HOH . 
F 3 HOH B 54 789 87 HOH HOH . 
F 3 HOH B 55 790 89 HOH HOH . 
F 3 HOH B 56 791 90 HOH HOH . 
F 3 HOH B 57 792 95 HOH HOH . 
F 3 HOH B 58 793 97 HOH HOH . 
F 3 HOH B 59 794 98 HOH HOH . 
F 3 HOH B 60 795 102 HOH HOH . 
F 3 HOH B 61 796 104 HOH HOH . 
F 3 HOH B 62 797 106 HOH HOH . 
F 3 HOH B 63 798 107 HOH HOH . 
F 3 HOH B 64 799 111 HOH HOH . 
F 3 HOH B 65 800 112 HOH HOH . 
F 3 HOH B 66 801 114 HOH HOH . 
F 3 HOH B 67 802 115 HOH HOH . 
F 3 HOH B 68 803 116 HOH HOH . 
F 3 HOH B 69 804 117 HOH HOH . 
F 3 HOH B 70 805 118 HOH HOH . 
F 3 HOH B 71 806 119 HOH HOH . 
F 3 HOH B 72 807 121 HOH HOH . 
F 3 HOH B 73 808 123 HOH HOH . 
F 3 HOH B 74 809 124 HOH HOH . 
F 3 HOH B 75 810 125 HOH HOH . 
F 3 HOH B 76 811 129 HOH HOH . 
F 3 HOH B 77 812 130 HOH HOH . 
F 3 HOH B 78 813 133 HOH HOH . 
F 3 HOH B 79 814 137 HOH HOH . 
F 3 HOH B 80 815 138 HOH HOH . 
F 3 HOH B 81 816 140 HOH HOH . 
F 3 HOH B 82 817 143 HOH HOH . 
F 3 HOH B 83 818 144 HOH HOH . 
F 3 HOH B 84 819 145 HOH HOH . 
F 3 HOH B 85 820 149 HOH HOH . 
F 3 HOH B 86 821 150 HOH HOH . 
F 3 HOH B 87 822 152 HOH HOH . 
F 3 HOH B 88 823 153 HOH HOH . 
F 3 HOH B 89 824 154 HOH HOH . 
F 3 HOH B 90 825 157 HOH HOH . 
F 3 HOH B 91 826 161 HOH HOH . 
F 3 HOH B 92 827 162 HOH HOH . 
F 3 HOH B 93 828 164 HOH HOH . 
F 3 HOH B 94 829 166 HOH HOH . 
F 3 HOH B 95 830 169 HOH HOH . 
F 3 HOH B 96 831 170 HOH HOH . 
F 3 HOH B 97 832 172 HOH HOH . 
F 3 HOH B 98 833 175 HOH HOH . 
F 3 HOH B 99 834 176 HOH HOH . 
F 3 HOH B 100 835 177 HOH HOH . 
F 3 HOH B 101 836 179 HOH HOH . 
F 3 HOH B 102 837 181 HOH HOH . 
F 3 HOH B 103 838 182 HOH HOH . 
F 3 HOH B 104 839 183 HOH HOH . 
F 3 HOH B 105 840 184 HOH HOH . 
F 3 HOH B 106 841 188 HOH HOH . 
F 3 HOH B 107 842 189 HOH HOH . 
F 3 HOH B 108 843 192 HOH HOH . 
F 3 HOH B 109 844 194 HOH HOH . 
F 3 HOH B 110 845 195 HOH HOH . 
F 3 HOH B 111 846 196 HOH HOH . 
F 3 HOH B 112 847 201 HOH HOH . 
F 3 HOH B 113 848 206 HOH HOH . 
F 3 HOH B 114 849 207 HOH HOH . 
F 3 HOH B 115 850 211 HOH HOH . 
F 3 HOH B 116 851 213 HOH HOH . 
F 3 HOH B 117 852 214 HOH HOH . 
F 3 HOH B 118 853 216 HOH HOH . 
F 3 HOH B 119 854 218 HOH HOH . 
F 3 HOH B 120 855 222 HOH HOH . 
F 3 HOH B 121 856 224 HOH HOH . 
F 3 HOH B 122 857 227 HOH HOH . 
F 3 HOH B 123 858 228 HOH HOH . 
F 3 HOH B 124 859 232 HOH HOH . 
F 3 HOH B 125 860 233 HOH HOH . 
F 3 HOH B 126 861 234 HOH HOH . 
F 3 HOH B 127 862 236 HOH HOH . 
F 3 HOH B 128 863 239 HOH HOH . 
F 3 HOH B 129 864 240 HOH HOH . 
F 3 HOH B 130 865 241 HOH HOH . 
F 3 HOH B 131 866 242 HOH HOH . 
F 3 HOH B 132 867 244 HOH HOH . 
F 3 HOH B 133 868 246 HOH HOH . 
F 3 HOH B 134 869 247 HOH HOH . 
F 3 HOH B 135 870 248 HOH HOH . 
F 3 HOH B 136 871 249 HOH HOH . 
F 3 HOH B 137 872 250 HOH HOH . 
F 3 HOH B 138 873 252 HOH HOH . 
F 3 HOH B 139 874 253 HOH HOH . 
F 3 HOH B 140 875 254 HOH HOH . 
F 3 HOH B 141 876 255 HOH HOH . 
F 3 HOH B 142 877 272 HOH HOH . 
F 3 HOH B 143 878 273 HOH HOH . 
F 3 HOH B 144 879 275 HOH HOH . 
F 3 HOH B 145 880 284 HOH HOH . 
F 3 HOH B 146 881 285 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O8 PNM . . . C 2 35.724 1.526 10.164 1 101.5 ? O8 PNM 998 A 1 
HETATM 2 C C7 PNM . . . C 2 36.587 0.767 10.549 1 99.22 ? C7 PNM 998 A 1 
HETATM 3 N N4 PNM . . . C 2 33.969 -0.492 10.606 1 101.58 ? N4 PNM 998 A 1 
HETATM 4 C C3 PNM . . . C 2 32.946 -1.45 10.212 1 99.29 ? C3 PNM 998 A 1 
HETATM 5 C C11 PNM . . . C 2 32.96 -1.539 8.706 1 97.73 ? C11 PNM 998 A 1 
HETATM 6 O O13 PNM . . . C 2 33.994 -1.643 8.061 1 97.7 ? O13 PNM 998 A 1 
HETATM 7 O O12 PNM . . . C 2 31.905 -1.446 8.131 1 97.56 ? O12 PNM 998 A 1 
HETATM 8 C C2 PNM . . . C 2 32.994 -2.764 11.037 1 99.37 ? C2 PNM 998 A 1 
HETATM 9 C C10 PNM . . . C 2 31.657 -2.956 11.753 1 99.35 ? C10 PNM 998 A 1 
HETATM 10 C C9 PNM . . . C 2 33.355 -4.024 10.237 1 99.77 ? C9 PNM 998 A 1 
HETATM 11 S S1 PNM . . . C 2 34.309 -2.392 12.274 1 99.57 ? S1 PNM 998 A 1 
HETATM 12 C C5 PNM . . . C 2 35.161 -1.219 11.13 1 101.49 ? C5 PNM 998 A 1 
HETATM 13 C C6 PNM . . . C 2 36.263 -0.259 11.64 1 101.87 ? C6 PNM 998 A 1 
HETATM 14 N N14 PNM . . . C 2 35.91 0.391 12.925 1 100.77 ? N14 PNM 998 A 1 
HETATM 15 C C15 PNM . . . C 2 36.208 -0.15 14.135 1 100.17 ? C15 PNM 998 A 1 
HETATM 16 O O16 PNM . . . C 2 36.799 -1.21 14.216 1 101.23 ? O16 PNM 998 A 1 
HETATM 17 C C17 PNM . . . C 2 35.798 0.548 15.413 1 99.72 ? C17 PNM 998 A 1 
HETATM 18 C C18 PNM . . . C 2 34.317 0.439 15.753 1 100.86 ? C18 PNM 998 A 1 
HETATM 19 C C19 PNM . . . C 2 33.89 0.86 17.015 1 101.52 ? C19 PNM 998 A 1 
HETATM 20 C C20 PNM . . . C 2 32.537 0.824 17.368 1 101.06 ? C20 PNM 998 A 1 
HETATM 21 C C21 PNM . . . C 2 31.596 0.345 16.46 1 100.92 ? C21 PNM 998 A 1 
HETATM 22 C C22 PNM . . . C 2 32.007 -0.083 15.2 1 101.02 ? C22 PNM 998 A 1 
HETATM 23 C C23 PNM . . . C 2 33.356 -0.029 14.849 1 100.94 ? C23 PNM 998 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#