data_3UDM # _model_server_result.job_id yllfdOmSrg91C18kZs2ydQ _model_server_result.datetime_utc '2024-12-27 03:25:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3udm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 3UDM # _exptl.entry_id 3UDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UDM _cell.length_a 74.771 _cell.length_b 103.571 _cell.length_c 99.048 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 159 A CYS 155 1_555 A SG CYS 363 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 221 A CYS 217 1_555 A SG CYS 386 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 A SG CYS 273 A CYS 269 1_555 A SG CYS 323 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 A ND1 HIS 400 A HIS 396 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 A NE2 HIS 402 A HIS 398 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 128 n n C1 C2 EDO sing 129 n n C1 H11 EDO sing 130 n n C1 H12 EDO sing 131 n n O1 HO1 EDO sing 132 n n C2 O2 EDO sing 133 n n C2 H21 EDO sing 134 n n C2 H22 EDO sing 135 n n O2 HO2 EDO sing 136 n n # _atom_sites.entry_id 3UDM _atom_sites.fract_transf_matrix[1][1] 0.013374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 09A A 1 501 399 09A 09A . C 3 ZN A 1 502 2 ZN ZN . D 4 EDO A 1 503 403 EDO EDO . E 5 PEG A 1 504 409 PEG PEG . F 6 HOH A 1 601 3 HOH HOH . F 6 HOH A 2 602 4 HOH HOH . F 6 HOH A 3 603 5 HOH HOH . F 6 HOH A 4 604 6 HOH HOH . F 6 HOH A 5 605 7 HOH HOH . F 6 HOH A 6 606 8 HOH HOH . F 6 HOH A 7 607 9 HOH HOH . F 6 HOH A 8 608 10 HOH HOH . F 6 HOH A 9 609 11 HOH HOH . F 6 HOH A 10 610 12 HOH HOH . F 6 HOH A 11 611 14 HOH HOH . F 6 HOH A 12 612 15 HOH HOH . F 6 HOH A 13 613 16 HOH HOH . F 6 HOH A 14 614 17 HOH HOH . F 6 HOH A 15 615 18 HOH HOH . F 6 HOH A 16 616 19 HOH HOH . F 6 HOH A 17 617 20 HOH HOH . F 6 HOH A 18 618 21 HOH HOH . F 6 HOH A 19 619 22 HOH HOH . F 6 HOH A 20 620 23 HOH HOH . F 6 HOH A 21 621 24 HOH HOH . F 6 HOH A 22 622 25 HOH HOH . F 6 HOH A 23 623 26 HOH HOH . F 6 HOH A 24 624 27 HOH HOH . F 6 HOH A 25 625 28 HOH HOH . F 6 HOH A 26 626 29 HOH HOH . F 6 HOH A 27 627 30 HOH HOH . F 6 HOH A 28 628 31 HOH HOH . F 6 HOH A 29 629 32 HOH HOH . F 6 HOH A 30 630 33 HOH HOH . F 6 HOH A 31 631 34 HOH HOH . F 6 HOH A 32 632 35 HOH HOH . F 6 HOH A 33 633 36 HOH HOH . F 6 HOH A 34 634 37 HOH HOH . F 6 HOH A 35 635 41 HOH HOH . F 6 HOH A 36 636 42 HOH HOH . F 6 HOH A 37 637 43 HOH HOH . F 6 HOH A 38 638 44 HOH HOH . F 6 HOH A 39 639 45 HOH HOH . F 6 HOH A 40 640 46 HOH HOH . F 6 HOH A 41 641 47 HOH HOH . F 6 HOH A 42 642 48 HOH HOH . F 6 HOH A 43 643 49 HOH HOH . F 6 HOH A 44 644 50 HOH HOH . F 6 HOH A 45 645 51 HOH HOH . F 6 HOH A 46 646 52 HOH HOH . F 6 HOH A 47 647 53 HOH HOH . F 6 HOH A 48 648 54 HOH HOH . F 6 HOH A 49 649 55 HOH HOH . F 6 HOH A 50 650 56 HOH HOH . F 6 HOH A 51 651 57 HOH HOH . F 6 HOH A 52 652 58 HOH HOH . F 6 HOH A 53 653 59 HOH HOH . F 6 HOH A 54 654 60 HOH HOH . F 6 HOH A 55 655 61 HOH HOH . F 6 HOH A 56 656 62 HOH HOH . F 6 HOH A 57 657 63 HOH HOH . F 6 HOH A 58 658 64 HOH HOH . F 6 HOH A 59 659 65 HOH HOH . F 6 HOH A 60 660 66 HOH HOH . F 6 HOH A 61 661 67 HOH HOH . F 6 HOH A 62 662 68 HOH HOH . F 6 HOH A 63 663 69 HOH HOH . F 6 HOH A 64 664 70 HOH HOH . F 6 HOH A 65 665 71 HOH HOH . F 6 HOH A 66 666 72 HOH HOH . F 6 HOH A 67 667 73 HOH HOH . F 6 HOH A 68 668 74 HOH HOH . F 6 HOH A 69 669 75 HOH HOH . F 6 HOH A 70 670 76 HOH HOH . F 6 HOH A 71 671 77 HOH HOH . F 6 HOH A 72 672 78 HOH HOH . F 6 HOH A 73 673 79 HOH HOH . F 6 HOH A 74 674 80 HOH HOH . F 6 HOH A 75 675 81 HOH HOH . F 6 HOH A 76 676 82 HOH HOH . F 6 HOH A 77 677 83 HOH HOH . F 6 HOH A 78 678 84 HOH HOH . F 6 HOH A 79 679 86 HOH HOH . F 6 HOH A 80 680 87 HOH HOH . F 6 HOH A 81 681 88 HOH HOH . F 6 HOH A 82 682 89 HOH HOH . F 6 HOH A 83 683 90 HOH HOH . F 6 HOH A 84 684 91 HOH HOH . F 6 HOH A 85 685 92 HOH HOH . F 6 HOH A 86 686 93 HOH HOH . F 6 HOH A 87 687 94 HOH HOH . F 6 HOH A 88 688 95 HOH HOH . F 6 HOH A 89 689 96 HOH HOH . F 6 HOH A 90 690 97 HOH HOH . F 6 HOH A 91 691 98 HOH HOH . F 6 HOH A 92 692 99 HOH HOH . F 6 HOH A 93 693 100 HOH HOH . F 6 HOH A 94 694 101 HOH HOH . F 6 HOH A 95 695 102 HOH HOH . F 6 HOH A 96 696 103 HOH HOH . F 6 HOH A 97 697 104 HOH HOH . F 6 HOH A 98 698 105 HOH HOH . F 6 HOH A 99 699 106 HOH HOH . F 6 HOH A 100 700 107 HOH HOH . F 6 HOH A 101 701 108 HOH HOH . F 6 HOH A 102 702 110 HOH HOH . F 6 HOH A 103 703 111 HOH HOH . F 6 HOH A 104 704 112 HOH HOH . F 6 HOH A 105 705 113 HOH HOH . F 6 HOH A 106 706 114 HOH HOH . F 6 HOH A 107 707 115 HOH HOH . F 6 HOH A 108 708 116 HOH HOH . F 6 HOH A 109 709 117 HOH HOH . F 6 HOH A 110 710 118 HOH HOH . F 6 HOH A 111 711 119 HOH HOH . F 6 HOH A 112 712 120 HOH HOH . F 6 HOH A 113 713 121 HOH HOH . F 6 HOH A 114 714 122 HOH HOH . F 6 HOH A 115 715 123 HOH HOH . F 6 HOH A 116 716 124 HOH HOH . F 6 HOH A 117 717 125 HOH HOH . F 6 HOH A 118 718 126 HOH HOH . F 6 HOH A 119 719 127 HOH HOH . F 6 HOH A 120 720 128 HOH HOH . F 6 HOH A 121 721 129 HOH HOH . F 6 HOH A 122 722 130 HOH HOH . F 6 HOH A 123 723 131 HOH HOH . F 6 HOH A 124 724 132 HOH HOH . F 6 HOH A 125 725 133 HOH HOH . F 6 HOH A 126 726 134 HOH HOH . F 6 HOH A 127 727 135 HOH HOH . F 6 HOH A 128 728 136 HOH HOH . F 6 HOH A 129 729 137 HOH HOH . F 6 HOH A 130 730 138 HOH HOH . F 6 HOH A 131 731 139 HOH HOH . F 6 HOH A 132 732 140 HOH HOH . F 6 HOH A 133 733 141 HOH HOH . F 6 HOH A 134 734 142 HOH HOH . F 6 HOH A 135 735 143 HOH HOH . F 6 HOH A 136 736 144 HOH HOH . F 6 HOH A 137 737 145 HOH HOH . F 6 HOH A 138 738 146 HOH HOH . F 6 HOH A 139 739 147 HOH HOH . F 6 HOH A 140 740 148 HOH HOH . F 6 HOH A 141 741 149 HOH HOH . F 6 HOH A 142 742 150 HOH HOH . F 6 HOH A 143 743 151 HOH HOH . F 6 HOH A 144 744 152 HOH HOH . F 6 HOH A 145 745 153 HOH HOH . F 6 HOH A 146 746 154 HOH HOH . F 6 HOH A 147 747 155 HOH HOH . F 6 HOH A 148 748 156 HOH HOH . F 6 HOH A 149 749 157 HOH HOH . F 6 HOH A 150 750 158 HOH HOH . F 6 HOH A 151 751 159 HOH HOH . F 6 HOH A 152 752 160 HOH HOH . F 6 HOH A 153 753 161 HOH HOH . F 6 HOH A 154 754 162 HOH HOH . F 6 HOH A 155 755 163 HOH HOH . F 6 HOH A 156 756 164 HOH HOH . F 6 HOH A 157 757 165 HOH HOH . F 6 HOH A 158 758 166 HOH HOH . F 6 HOH A 159 759 167 HOH HOH . F 6 HOH A 160 760 168 HOH HOH . F 6 HOH A 161 761 169 HOH HOH . F 6 HOH A 162 762 170 HOH HOH . F 6 HOH A 163 763 171 HOH HOH . F 6 HOH A 164 764 172 HOH HOH . F 6 HOH A 165 765 173 HOH HOH . F 6 HOH A 166 766 174 HOH HOH . F 6 HOH A 167 767 175 HOH HOH . F 6 HOH A 168 768 176 HOH HOH . F 6 HOH A 169 769 177 HOH HOH . F 6 HOH A 170 770 178 HOH HOH . F 6 HOH A 171 771 179 HOH HOH . F 6 HOH A 172 772 180 HOH HOH . F 6 HOH A 173 773 181 HOH HOH . F 6 HOH A 174 774 182 HOH HOH . F 6 HOH A 175 775 183 HOH HOH . F 6 HOH A 176 776 184 HOH HOH . F 6 HOH A 177 777 185 HOH HOH . F 6 HOH A 178 778 186 HOH HOH . F 6 HOH A 179 779 187 HOH HOH . F 6 HOH A 180 780 188 HOH HOH . F 6 HOH A 181 781 189 HOH HOH . F 6 HOH A 182 782 190 HOH HOH . F 6 HOH A 183 783 191 HOH HOH . F 6 HOH A 184 784 192 HOH HOH . F 6 HOH A 185 785 193 HOH HOH . F 6 HOH A 186 786 194 HOH HOH . F 6 HOH A 187 787 195 HOH HOH . F 6 HOH A 188 788 196 HOH HOH . F 6 HOH A 189 789 197 HOH HOH . F 6 HOH A 190 790 198 HOH HOH . F 6 HOH A 191 791 199 HOH HOH . F 6 HOH A 192 792 200 HOH HOH . F 6 HOH A 193 793 201 HOH HOH . F 6 HOH A 194 794 202 HOH HOH . F 6 HOH A 195 795 203 HOH HOH . F 6 HOH A 196 796 204 HOH HOH . F 6 HOH A 197 797 205 HOH HOH . F 6 HOH A 198 798 206 HOH HOH . F 6 HOH A 199 799 208 HOH HOH . F 6 HOH A 200 800 209 HOH HOH . F 6 HOH A 201 801 210 HOH HOH . F 6 HOH A 202 802 211 HOH HOH . F 6 HOH A 203 803 212 HOH HOH . F 6 HOH A 204 804 213 HOH HOH . F 6 HOH A 205 805 214 HOH HOH . F 6 HOH A 206 806 215 HOH HOH . F 6 HOH A 207 807 216 HOH HOH . F 6 HOH A 208 808 217 HOH HOH . F 6 HOH A 209 809 218 HOH HOH . F 6 HOH A 210 810 219 HOH HOH . F 6 HOH A 211 811 220 HOH HOH . F 6 HOH A 212 812 221 HOH HOH . F 6 HOH A 213 813 222 HOH HOH . F 6 HOH A 214 814 223 HOH HOH . F 6 HOH A 215 815 224 HOH HOH . F 6 HOH A 216 816 225 HOH HOH . F 6 HOH A 217 817 226 HOH HOH . F 6 HOH A 218 818 227 HOH HOH . F 6 HOH A 219 819 228 HOH HOH . F 6 HOH A 220 820 229 HOH HOH . F 6 HOH A 221 821 230 HOH HOH . F 6 HOH A 222 822 231 HOH HOH . F 6 HOH A 223 823 232 HOH HOH . F 6 HOH A 224 824 233 HOH HOH . F 6 HOH A 225 825 234 HOH HOH . F 6 HOH A 226 826 235 HOH HOH . F 6 HOH A 227 827 236 HOH HOH . F 6 HOH A 228 828 237 HOH HOH . F 6 HOH A 229 829 238 HOH HOH . F 6 HOH A 230 830 239 HOH HOH . F 6 HOH A 231 831 240 HOH HOH . F 6 HOH A 232 832 241 HOH HOH . F 6 HOH A 233 833 242 HOH HOH . F 6 HOH A 234 834 243 HOH HOH . F 6 HOH A 235 835 244 HOH HOH . F 6 HOH A 236 836 245 HOH HOH . F 6 HOH A 237 837 246 HOH HOH . F 6 HOH A 238 838 247 HOH HOH . F 6 HOH A 239 839 248 HOH HOH . F 6 HOH A 240 840 249 HOH HOH . F 6 HOH A 241 841 250 HOH HOH . F 6 HOH A 242 842 251 HOH HOH . F 6 HOH A 243 843 252 HOH HOH . F 6 HOH A 244 844 253 HOH HOH . F 6 HOH A 245 845 254 HOH HOH . F 6 HOH A 246 846 255 HOH HOH . F 6 HOH A 247 847 256 HOH HOH . F 6 HOH A 248 848 257 HOH HOH . F 6 HOH A 249 849 258 HOH HOH . F 6 HOH A 250 850 259 HOH HOH . F 6 HOH A 251 851 260 HOH HOH . F 6 HOH A 252 852 261 HOH HOH . F 6 HOH A 253 853 262 HOH HOH . F 6 HOH A 254 854 265 HOH HOH . F 6 HOH A 255 855 266 HOH HOH . F 6 HOH A 256 856 267 HOH HOH . F 6 HOH A 257 857 268 HOH HOH . F 6 HOH A 258 858 269 HOH HOH . F 6 HOH A 259 859 270 HOH HOH . F 6 HOH A 260 860 271 HOH HOH . F 6 HOH A 261 861 272 HOH HOH . F 6 HOH A 262 862 273 HOH HOH . F 6 HOH A 263 863 274 HOH HOH . F 6 HOH A 264 864 275 HOH HOH . F 6 HOH A 265 865 276 HOH HOH . F 6 HOH A 266 866 277 HOH HOH . F 6 HOH A 267 867 279 HOH HOH . F 6 HOH A 268 868 280 HOH HOH . F 6 HOH A 269 869 283 HOH HOH . F 6 HOH A 270 870 284 HOH HOH . F 6 HOH A 271 871 286 HOH HOH . F 6 HOH A 272 872 287 HOH HOH . F 6 HOH A 273 873 288 HOH HOH . F 6 HOH A 274 874 289 HOH HOH . F 6 HOH A 275 875 290 HOH HOH . F 6 HOH A 276 876 291 HOH HOH . F 6 HOH A 277 877 292 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 5.197 24.051 51.004 1 51.92 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . D 4 5.634 24.608 52.249 1 51.42 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . D 4 3.719 23.706 51.105 1 54.84 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . D 4 3.562 22.291 51.032 1 53.88 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 485 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #