data_3UDN # _model_server_result.job_id FopnL8NNR67CZha_ERHHCw _model_server_result.datetime_utc '2024-10-18 09:18:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3udn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3UDN # _exptl.entry_id 3UDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UDN _cell.length_a 74.432 _cell.length_b 103.397 _cell.length_c 98.548 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 159 A CYS 155 1_555 A SG CYS 363 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 221 A CYS 217 1_555 A SG CYS 386 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 273 A CYS 269 1_555 A SG CYS 323 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A ND1 HIS 400 A HIS 396 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A NE2 HIS 402 A HIS 398 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 129 n n C1 C2 EDO sing 130 n n C1 H11 EDO sing 131 n n C1 H12 EDO sing 132 n n O1 HO1 EDO sing 133 n n C2 O2 EDO sing 134 n n C2 H21 EDO sing 135 n n C2 H22 EDO sing 136 n n O2 HO2 EDO sing 137 n n # _atom_sites.entry_id 3UDN _atom_sites.fract_transf_matrix[1][1] 0.013435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 09B A 1 401 399 09B INH . C 3 EDO A 1 402 401 EDO PG1 . D 3 EDO A 1 403 403 EDO PG1 . E 4 PEG A 1 409 409 PEG PG2 . F 5 ZN A 1 404 2 ZN ZN . G 6 HOH A 1 405 1 HOH HOH . G 6 HOH A 2 406 3 HOH HOH . G 6 HOH A 3 407 4 HOH HOH . G 6 HOH A 4 408 5 HOH HOH . G 6 HOH A 5 410 6 HOH HOH . G 6 HOH A 6 411 7 HOH HOH . G 6 HOH A 7 412 8 HOH HOH . G 6 HOH A 8 413 9 HOH HOH . G 6 HOH A 9 414 10 HOH HOH . G 6 HOH A 10 415 11 HOH HOH . G 6 HOH A 11 416 12 HOH HOH . G 6 HOH A 12 417 14 HOH HOH . G 6 HOH A 13 418 15 HOH HOH . G 6 HOH A 14 419 16 HOH HOH . G 6 HOH A 15 420 17 HOH HOH . G 6 HOH A 16 421 19 HOH HOH . G 6 HOH A 17 422 20 HOH HOH . G 6 HOH A 18 423 21 HOH HOH . G 6 HOH A 19 424 22 HOH HOH . G 6 HOH A 20 425 23 HOH HOH . G 6 HOH A 21 426 24 HOH HOH . G 6 HOH A 22 427 25 HOH HOH . G 6 HOH A 23 428 26 HOH HOH . G 6 HOH A 24 429 27 HOH HOH . G 6 HOH A 25 430 28 HOH HOH . G 6 HOH A 26 431 29 HOH HOH . G 6 HOH A 27 432 30 HOH HOH . G 6 HOH A 28 433 31 HOH HOH . G 6 HOH A 29 434 32 HOH HOH . G 6 HOH A 30 435 33 HOH HOH . G 6 HOH A 31 436 34 HOH HOH . G 6 HOH A 32 437 35 HOH HOH . G 6 HOH A 33 438 36 HOH HOH . G 6 HOH A 34 439 37 HOH HOH . G 6 HOH A 35 440 38 HOH HOH . G 6 HOH A 36 441 39 HOH HOH . G 6 HOH A 37 442 40 HOH HOH . G 6 HOH A 38 443 41 HOH HOH . G 6 HOH A 39 444 42 HOH HOH . G 6 HOH A 40 445 43 HOH HOH . G 6 HOH A 41 446 45 HOH HOH . G 6 HOH A 42 447 46 HOH HOH . G 6 HOH A 43 448 47 HOH HOH . G 6 HOH A 44 449 48 HOH HOH . G 6 HOH A 45 450 49 HOH HOH . G 6 HOH A 46 451 50 HOH HOH . G 6 HOH A 47 452 52 HOH HOH . G 6 HOH A 48 453 53 HOH HOH . G 6 HOH A 49 454 54 HOH HOH . G 6 HOH A 50 455 55 HOH HOH . G 6 HOH A 51 456 56 HOH HOH . G 6 HOH A 52 457 57 HOH HOH . G 6 HOH A 53 458 58 HOH HOH . G 6 HOH A 54 459 59 HOH HOH . G 6 HOH A 55 460 62 HOH HOH . G 6 HOH A 56 461 64 HOH HOH . G 6 HOH A 57 462 66 HOH HOH . G 6 HOH A 58 463 67 HOH HOH . G 6 HOH A 59 464 68 HOH HOH . G 6 HOH A 60 465 69 HOH HOH . G 6 HOH A 61 466 70 HOH HOH . G 6 HOH A 62 467 71 HOH HOH . G 6 HOH A 63 468 72 HOH HOH . G 6 HOH A 64 469 73 HOH HOH . G 6 HOH A 65 470 74 HOH HOH . G 6 HOH A 66 471 75 HOH HOH . G 6 HOH A 67 472 76 HOH HOH . G 6 HOH A 68 473 77 HOH HOH . G 6 HOH A 69 474 78 HOH HOH . G 6 HOH A 70 475 80 HOH HOH . G 6 HOH A 71 476 81 HOH HOH . G 6 HOH A 72 477 83 HOH HOH . G 6 HOH A 73 478 84 HOH HOH . G 6 HOH A 74 479 85 HOH HOH . G 6 HOH A 75 480 86 HOH HOH . G 6 HOH A 76 481 88 HOH HOH . G 6 HOH A 77 482 89 HOH HOH . G 6 HOH A 78 483 90 HOH HOH . G 6 HOH A 79 484 91 HOH HOH . G 6 HOH A 80 485 93 HOH HOH . G 6 HOH A 81 486 94 HOH HOH . G 6 HOH A 82 487 95 HOH HOH . G 6 HOH A 83 488 96 HOH HOH . G 6 HOH A 84 489 97 HOH HOH . G 6 HOH A 85 490 99 HOH HOH . G 6 HOH A 86 491 100 HOH HOH . G 6 HOH A 87 492 102 HOH HOH . G 6 HOH A 88 493 103 HOH HOH . G 6 HOH A 89 494 104 HOH HOH . G 6 HOH A 90 495 106 HOH HOH . G 6 HOH A 91 496 108 HOH HOH . G 6 HOH A 92 497 109 HOH HOH . G 6 HOH A 93 498 110 HOH HOH . G 6 HOH A 94 499 111 HOH HOH . G 6 HOH A 95 500 112 HOH HOH . G 6 HOH A 96 501 113 HOH HOH . G 6 HOH A 97 502 114 HOH HOH . G 6 HOH A 98 503 115 HOH HOH . G 6 HOH A 99 504 116 HOH HOH . G 6 HOH A 100 505 117 HOH HOH . G 6 HOH A 101 506 118 HOH HOH . G 6 HOH A 102 507 119 HOH HOH . G 6 HOH A 103 508 120 HOH HOH . G 6 HOH A 104 509 121 HOH HOH . G 6 HOH A 105 510 122 HOH HOH . G 6 HOH A 106 511 123 HOH HOH . G 6 HOH A 107 512 125 HOH HOH . G 6 HOH A 108 513 127 HOH HOH . G 6 HOH A 109 514 128 HOH HOH . G 6 HOH A 110 515 129 HOH HOH . G 6 HOH A 111 516 130 HOH HOH . G 6 HOH A 112 517 132 HOH HOH . G 6 HOH A 113 518 133 HOH HOH . G 6 HOH A 114 519 136 HOH HOH . G 6 HOH A 115 520 138 HOH HOH . G 6 HOH A 116 521 139 HOH HOH . G 6 HOH A 117 522 140 HOH HOH . G 6 HOH A 118 523 141 HOH HOH . G 6 HOH A 119 524 145 HOH HOH . G 6 HOH A 120 525 146 HOH HOH . G 6 HOH A 121 526 157 HOH HOH . G 6 HOH A 122 527 158 HOH HOH . G 6 HOH A 123 528 159 HOH HOH . G 6 HOH A 124 529 160 HOH HOH . G 6 HOH A 125 530 161 HOH HOH . G 6 HOH A 126 531 164 HOH HOH . G 6 HOH A 127 532 165 HOH HOH . G 6 HOH A 128 533 166 HOH HOH . G 6 HOH A 129 534 168 HOH HOH . G 6 HOH A 130 535 174 HOH HOH . G 6 HOH A 131 536 178 HOH HOH . G 6 HOH A 132 537 180 HOH HOH . G 6 HOH A 133 538 182 HOH HOH . G 6 HOH A 134 539 183 HOH HOH . G 6 HOH A 135 540 186 HOH HOH . G 6 HOH A 136 541 187 HOH HOH . G 6 HOH A 137 542 191 HOH HOH . G 6 HOH A 138 543 193 HOH HOH . G 6 HOH A 139 544 196 HOH HOH . G 6 HOH A 140 545 203 HOH HOH . G 6 HOH A 141 546 215 HOH HOH . G 6 HOH A 142 547 217 HOH HOH . G 6 HOH A 143 548 220 HOH HOH . G 6 HOH A 144 549 227 HOH HOH . G 6 HOH A 145 550 228 HOH HOH . G 6 HOH A 146 551 234 HOH HOH . G 6 HOH A 147 552 235 HOH HOH . G 6 HOH A 148 553 236 HOH HOH . G 6 HOH A 149 554 237 HOH HOH . G 6 HOH A 150 555 238 HOH HOH . G 6 HOH A 151 556 239 HOH HOH . G 6 HOH A 152 557 240 HOH HOH . G 6 HOH A 153 558 242 HOH HOH . G 6 HOH A 154 559 243 HOH HOH . G 6 HOH A 155 560 244 HOH HOH . G 6 HOH A 156 561 245 HOH HOH . G 6 HOH A 157 562 1 HOH HOH . G 6 HOH A 158 563 2 HOH HOH . G 6 HOH A 159 564 5 HOH HOH . G 6 HOH A 160 565 6 HOH HOH . G 6 HOH A 161 566 7 HOH HOH . G 6 HOH A 162 567 8 HOH HOH . G 6 HOH A 163 568 9 HOH HOH . G 6 HOH A 164 569 18 HOH HOH . G 6 HOH A 165 570 19 HOH HOH . G 6 HOH A 166 571 22 HOH HOH . G 6 HOH A 167 572 27 HOH HOH . G 6 HOH A 168 573 34 HOH HOH . G 6 HOH A 169 574 36 HOH HOH . G 6 HOH A 170 575 37 HOH HOH . G 6 HOH A 171 576 41 HOH HOH . G 6 HOH A 172 577 43 HOH HOH . G 6 HOH A 173 578 50 HOH HOH . G 6 HOH A 174 579 52 HOH HOH . G 6 HOH A 175 580 66 HOH HOH . G 6 HOH A 176 581 74 HOH HOH . G 6 HOH A 177 582 77 HOH HOH . G 6 HOH A 178 583 82 HOH HOH . G 6 HOH A 179 584 86 HOH HOH . G 6 HOH A 180 585 90 HOH HOH . G 6 HOH A 181 586 94 HOH HOH . G 6 HOH A 182 587 111 HOH HOH . G 6 HOH A 183 588 112 HOH HOH . G 6 HOH A 184 589 113 HOH HOH . G 6 HOH A 185 590 122 HOH HOH . G 6 HOH A 186 591 129 HOH HOH . G 6 HOH A 187 592 139 HOH HOH . G 6 HOH A 188 593 166 HOH HOH . G 6 HOH A 189 594 169 HOH HOH . G 6 HOH A 190 595 1 HOH HOH . G 6 HOH A 191 596 7 HOH HOH . G 6 HOH A 192 597 8 HOH HOH . G 6 HOH A 193 598 14 HOH HOH . G 6 HOH A 194 599 24 HOH HOH . G 6 HOH A 195 600 43 HOH HOH . G 6 HOH A 196 601 58 HOH HOH . G 6 HOH A 197 602 84 HOH HOH . G 6 HOH A 198 603 153 HOH HOH . G 6 HOH A 199 604 155 HOH HOH . G 6 HOH A 200 605 156 HOH HOH . G 6 HOH A 201 606 157 HOH HOH . G 6 HOH A 202 607 160 HOH HOH . G 6 HOH A 203 608 18 HOH HOH . G 6 HOH A 204 609 26 HOH HOH . G 6 HOH A 205 610 34 HOH HOH . G 6 HOH A 206 611 36 HOH HOH . G 6 HOH A 207 612 39 HOH HOH . G 6 HOH A 208 613 45 HOH HOH . G 6 HOH A 209 614 137 HOH HOH . G 6 HOH A 210 615 18 HOH HOH . G 6 HOH A 211 616 87 HOH HOH . G 6 HOH A 212 617 105 HOH HOH . G 6 HOH A 213 618 138 HOH HOH . G 6 HOH A 214 619 139 HOH HOH . G 6 HOH A 215 620 140 HOH HOH . G 6 HOH A 216 621 141 HOH HOH . G 6 HOH A 217 622 142 HOH HOH . G 6 HOH A 218 623 143 HOH HOH . G 6 HOH A 219 624 144 HOH HOH . G 6 HOH A 220 625 145 HOH HOH . G 6 HOH A 221 626 146 HOH HOH . G 6 HOH A 222 627 148 HOH HOH . G 6 HOH A 223 628 151 HOH HOH . G 6 HOH A 224 629 153 HOH HOH . G 6 HOH A 225 630 154 HOH HOH . G 6 HOH A 226 631 155 HOH HOH . G 6 HOH A 227 632 156 HOH HOH . G 6 HOH A 228 633 157 HOH HOH . G 6 HOH A 229 634 158 HOH HOH . G 6 HOH A 230 635 159 HOH HOH . G 6 HOH A 231 636 160 HOH HOH . G 6 HOH A 232 637 161 HOH HOH . G 6 HOH A 233 638 162 HOH HOH . G 6 HOH A 234 639 163 HOH HOH . G 6 HOH A 235 640 167 HOH HOH . G 6 HOH A 236 641 168 HOH HOH . G 6 HOH A 237 642 170 HOH HOH . G 6 HOH A 238 643 173 HOH HOH . G 6 HOH A 239 644 174 HOH HOH . G 6 HOH A 240 645 175 HOH HOH . G 6 HOH A 241 646 177 HOH HOH . G 6 HOH A 242 647 179 HOH HOH . G 6 HOH A 243 648 180 HOH HOH . G 6 HOH A 244 649 182 HOH HOH . G 6 HOH A 245 650 183 HOH HOH . G 6 HOH A 246 651 184 HOH HOH . G 6 HOH A 247 652 4 HOH HOH . G 6 HOH A 248 653 12 HOH HOH . G 6 HOH A 249 654 56 HOH HOH . G 6 HOH A 250 655 59 HOH HOH . G 6 HOH A 251 656 70 HOH HOH . G 6 HOH A 252 657 138 HOH HOH . G 6 HOH A 253 658 161 HOH HOH . G 6 HOH A 254 659 164 HOH HOH . G 6 HOH A 255 660 165 HOH HOH . G 6 HOH A 256 661 3 HOH HOH . G 6 HOH A 257 662 7 HOH HOH . G 6 HOH A 258 663 23 HOH HOH . G 6 HOH A 259 664 56 HOH HOH . G 6 HOH A 260 665 146 HOH HOH . G 6 HOH A 261 666 150 HOH HOH . G 6 HOH A 262 667 11 HOH HOH . G 6 HOH A 263 668 79 HOH HOH . G 6 HOH A 264 669 137 HOH HOH . G 6 HOH A 265 670 139 HOH HOH . G 6 HOH A 266 671 20 HOH HOH . G 6 HOH A 267 672 39 HOH HOH . G 6 HOH A 268 673 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 15.923 53.465 28.401 1 38.65 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 3 14.739 52.808 27.963 1 43.42 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 3 15.824 54.87 27.856 1 35.95 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 3 15.431 54.669 26.523 1 36.94 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #