data_3UDO # _model_server_result.job_id EHlWiV934uc93SlFWsqhgw _model_server_result.datetime_utc '2024-11-26 01:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3udo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":361}' # _entry.id 3UDO # _exptl.entry_id 3UDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UDO _cell.length_a 74.794 _cell.length_b 74.794 _cell.length_c 163.787 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 163.787 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N LYS 5 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C VAL 21 A VAL 18 1_555 A N MSE 22 A MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C MSE 22 A MSE 19 1_555 A N LYS 23 A LYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C TYR 220 A TYR 217 1_555 A N MSE 221 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C MSE 221 A MSE 218 1_555 A N TYR 222 A TYR 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 A C ALA 227 A ALA 224 1_555 A N MSE 228 A MSE 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale7 A C MSE 228 A MSE 225 1_555 A N GLN 229 A GLN 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C VAL 239 A VAL 236 1_555 A N MSE 240 A MSE 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale9 A C MSE 240 A MSE 237 1_555 A N LEU 241 A LEU 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 A C LEU 304 A LEU 301 1_555 A N MSE 305 A MSE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C MSE 305 A MSE 302 1_555 A N LEU 306 A LEU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale12 A C LYS 331 A LYS 328 1_555 A N MSE 332 A MSE 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C MSE 332 A MSE 329 1_555 A N THR 333 A THR 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale14 A C GLU 346 A GLU 343 1_555 A N MSE 347 A MSE 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale15 A C MSE 347 A MSE 344 1_555 A N GLY 348 A GLY 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 299 n n S O2 SO4 doub 300 n n S O3 SO4 sing 301 n n S O4 SO4 sing 302 n n # _atom_sites.entry_id 3UDO _atom_sites.fract_transf_matrix[1][1] 0.01337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 359 1 EDO EDO . C 2 EDO A 1 360 7 EDO EDO . D 3 SO4 A 1 361 1 SO4 SO4 . E 3 SO4 A 1 362 2 SO4 SO4 . F 3 SO4 A 1 363 3 SO4 SO4 . G 3 SO4 A 1 364 4 SO4 SO4 . H 4 HOH A 1 365 1 HOH HOH . H 4 HOH A 2 366 2 HOH HOH . H 4 HOH A 3 367 3 HOH HOH . H 4 HOH A 4 368 4 HOH HOH . H 4 HOH A 5 369 5 HOH HOH . H 4 HOH A 6 370 6 HOH HOH . H 4 HOH A 7 371 7 HOH HOH . H 4 HOH A 8 372 8 HOH HOH . H 4 HOH A 9 373 9 HOH HOH . H 4 HOH A 10 374 10 HOH HOH . H 4 HOH A 11 375 11 HOH HOH . H 4 HOH A 12 376 12 HOH HOH . H 4 HOH A 13 377 13 HOH HOH . H 4 HOH A 14 378 14 HOH HOH . H 4 HOH A 15 379 15 HOH HOH . H 4 HOH A 16 380 16 HOH HOH . H 4 HOH A 17 381 17 HOH HOH . H 4 HOH A 18 382 18 HOH HOH . H 4 HOH A 19 383 19 HOH HOH . H 4 HOH A 20 384 20 HOH HOH . H 4 HOH A 21 385 21 HOH HOH . H 4 HOH A 22 386 22 HOH HOH . H 4 HOH A 23 387 23 HOH HOH . H 4 HOH A 24 388 24 HOH HOH . H 4 HOH A 25 389 25 HOH HOH . H 4 HOH A 26 390 26 HOH HOH . H 4 HOH A 27 391 27 HOH HOH . H 4 HOH A 28 392 28 HOH HOH . H 4 HOH A 29 393 30 HOH HOH . H 4 HOH A 30 394 31 HOH HOH . H 4 HOH A 31 395 32 HOH HOH . H 4 HOH A 32 396 33 HOH HOH . H 4 HOH A 33 397 34 HOH HOH . H 4 HOH A 34 398 35 HOH HOH . H 4 HOH A 35 399 36 HOH HOH . H 4 HOH A 36 400 37 HOH HOH . H 4 HOH A 37 401 38 HOH HOH . H 4 HOH A 38 402 39 HOH HOH . H 4 HOH A 39 403 40 HOH HOH . H 4 HOH A 40 404 41 HOH HOH . H 4 HOH A 41 405 42 HOH HOH . H 4 HOH A 42 406 43 HOH HOH . H 4 HOH A 43 407 44 HOH HOH . H 4 HOH A 44 408 45 HOH HOH . H 4 HOH A 45 409 46 HOH HOH . H 4 HOH A 46 410 47 HOH HOH . H 4 HOH A 47 411 49 HOH HOH . H 4 HOH A 48 412 50 HOH HOH . H 4 HOH A 49 413 51 HOH HOH . H 4 HOH A 50 414 52 HOH HOH . H 4 HOH A 51 415 53 HOH HOH . H 4 HOH A 52 416 54 HOH HOH . H 4 HOH A 53 417 56 HOH HOH . H 4 HOH A 54 418 57 HOH HOH . H 4 HOH A 55 419 58 HOH HOH . H 4 HOH A 56 420 59 HOH HOH . H 4 HOH A 57 421 60 HOH HOH . H 4 HOH A 58 422 61 HOH HOH . H 4 HOH A 59 423 62 HOH HOH . H 4 HOH A 60 424 63 HOH HOH . H 4 HOH A 61 425 64 HOH HOH . H 4 HOH A 62 426 65 HOH HOH . H 4 HOH A 63 427 66 HOH HOH . H 4 HOH A 64 428 67 HOH HOH . H 4 HOH A 65 429 68 HOH HOH . H 4 HOH A 66 430 69 HOH HOH . H 4 HOH A 67 431 70 HOH HOH . H 4 HOH A 68 432 71 HOH HOH . H 4 HOH A 69 433 72 HOH HOH . H 4 HOH A 70 434 73 HOH HOH . H 4 HOH A 71 435 74 HOH HOH . H 4 HOH A 72 436 75 HOH HOH . H 4 HOH A 73 437 76 HOH HOH . H 4 HOH A 74 438 78 HOH HOH . H 4 HOH A 75 439 79 HOH HOH . H 4 HOH A 76 440 80 HOH HOH . H 4 HOH A 77 441 81 HOH HOH . H 4 HOH A 78 442 82 HOH HOH . H 4 HOH A 79 443 84 HOH HOH . H 4 HOH A 80 444 85 HOH HOH . H 4 HOH A 81 445 86 HOH HOH . H 4 HOH A 82 446 87 HOH HOH . H 4 HOH A 83 447 88 HOH HOH . H 4 HOH A 84 448 89 HOH HOH . H 4 HOH A 85 449 90 HOH HOH . H 4 HOH A 86 450 91 HOH HOH . H 4 HOH A 87 451 92 HOH HOH . H 4 HOH A 88 452 93 HOH HOH . H 4 HOH A 89 453 94 HOH HOH . H 4 HOH A 90 454 95 HOH HOH . H 4 HOH A 91 455 96 HOH HOH . H 4 HOH A 92 456 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 0.172 19.668 81.393 1 63.26 ? S SO4 361 A 1 HETATM 2 O O1 SO4 . . . D 3 -0.412 18.478 80.759 1 63.32 ? O1 SO4 361 A 1 HETATM 3 O O2 SO4 . . . D 3 -0.557 20.897 81.05 1 66.64 ? O2 SO4 361 A 1 HETATM 4 O O3 SO4 . . . D 3 0.067 19.416 82.825 1 65.39 ? O3 SO4 361 A 1 HETATM 5 O O4 SO4 . . . D 3 1.575 19.9 80.921 1 63.02 ? O4 SO4 361 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 5 #