data_3UDQ # _model_server_result.job_id dk1mCdh-L8Y1iogh-hNGWQ _model_server_result.datetime_utc '2024-12-03 04:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3udq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 3UDQ # _exptl.entry_id 3UDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.355 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4S)-6-bromo-1,1-dioxido-3,4-dihydro-2H-thiochromen-4-yl (3S,5'R)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxylate" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UDQ _cell.length_a 74.467 _cell.length_b 103.824 _cell.length_c 100.052 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 159 A CYS 155 1_555 A SG CYS 363 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 221 A CYS 217 1_555 A SG CYS 386 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 273 A CYS 269 1_555 A SG CYS 323 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C21 H19 Br N2 O5 S' _chem_comp.formula_weight 491.355 _chem_comp.id 09E _chem_comp.mon_nstd_flag . _chem_comp.name "(4S)-6-bromo-1,1-dioxido-3,4-dihydro-2H-thiochromen-4-yl (3S,5'R)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C7 09E sing 1 n n N1 C10 09E sing 2 n n C3 C5 09E doub 3 n y C3 C1 09E sing 4 n y C5 C8 09E sing 5 n y C7 C4 09E sing 6 n n C7 C9 09E sing 7 n n C10 C2 09E sing 8 n n C8 C6 09E doub 9 n y O1 C9 09E doub 10 n n C4 C2 09E sing 11 n n C1 C2 09E sing 12 n n C1 C12 09E doub 13 n y C9 O3 09E sing 14 n n BR1 C19 09E sing 15 n n C2 C11 09E sing 16 n n O3 C13 09E sing 17 n n C6 C12 09E sing 18 n y C12 N2 09E sing 19 n n C18 C19 09E doub 20 n y C18 C17 09E sing 21 n y C19 C20 09E sing 22 n y C13 C17 09E sing 23 n n C13 C14 09E sing 24 n n C11 N2 09E sing 25 n n C11 O2 09E doub 26 n n C17 C16 09E doub 27 n y C14 C15 09E sing 28 n n C20 C21 09E doub 29 n y C16 C21 09E sing 30 n y C16 S1 09E sing 31 n n C15 S1 09E sing 32 n n S1 O4 09E doub 33 n n S1 O5 09E doub 34 n n C3 H1 09E sing 35 n n C4 H2 09E sing 36 n n C4 H3 09E sing 37 n n C5 H4 09E sing 38 n n C6 H5 09E sing 39 n n C7 H6 09E sing 40 n n C8 H7 09E sing 41 n n N1 H8 09E sing 42 n n C10 H10 09E sing 43 n n C10 H11 09E sing 44 n n N2 H12 09E sing 45 n n C13 H13 09E sing 46 n n C14 H14 09E sing 47 n n C14 H15 09E sing 48 n n C15 H16 09E sing 49 n n C15 H17 09E sing 50 n n C18 H18 09E sing 51 n n C20 H19 09E sing 52 n n C21 H20 09E sing 53 n n # _atom_sites.entry_id 3UDQ _atom_sites.fract_transf_matrix[1][1] 0.013429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 09E A 1 4000 4000 09E PFE . C 3 HOH A 1 401 8 HOH HOH . C 3 HOH A 2 402 9 HOH HOH . C 3 HOH A 3 403 11 HOH HOH . C 3 HOH A 4 404 12 HOH HOH . C 3 HOH A 5 405 13 HOH HOH . C 3 HOH A 6 406 14 HOH HOH . C 3 HOH A 7 407 15 HOH HOH . C 3 HOH A 8 408 16 HOH HOH . C 3 HOH A 9 409 17 HOH HOH . C 3 HOH A 10 410 18 HOH HOH . C 3 HOH A 11 411 19 HOH HOH . C 3 HOH A 12 412 20 HOH HOH . C 3 HOH A 13 413 21 HOH HOH . C 3 HOH A 14 414 22 HOH HOH . C 3 HOH A 15 415 23 HOH HOH . C 3 HOH A 16 416 24 HOH HOH . C 3 HOH A 17 417 25 HOH HOH . C 3 HOH A 18 418 26 HOH HOH . C 3 HOH A 19 419 27 HOH HOH . C 3 HOH A 20 420 28 HOH HOH . C 3 HOH A 21 421 29 HOH HOH . C 3 HOH A 22 422 31 HOH HOH . C 3 HOH A 23 423 33 HOH HOH . C 3 HOH A 24 424 34 HOH HOH . C 3 HOH A 25 425 35 HOH HOH . C 3 HOH A 26 426 37 HOH HOH . C 3 HOH A 27 427 39 HOH HOH . C 3 HOH A 28 428 40 HOH HOH . C 3 HOH A 29 429 41 HOH HOH . C 3 HOH A 30 430 42 HOH HOH . C 3 HOH A 31 431 43 HOH HOH . C 3 HOH A 32 432 44 HOH HOH . C 3 HOH A 33 433 45 HOH HOH . C 3 HOH A 34 434 46 HOH HOH . C 3 HOH A 35 435 48 HOH HOH . C 3 HOH A 36 436 49 HOH HOH . C 3 HOH A 37 437 50 HOH HOH . C 3 HOH A 38 438 51 HOH HOH . C 3 HOH A 39 439 52 HOH HOH . C 3 HOH A 40 440 53 HOH HOH . C 3 HOH A 41 441 54 HOH HOH . C 3 HOH A 42 442 55 HOH HOH . C 3 HOH A 43 443 56 HOH HOH . C 3 HOH A 44 444 57 HOH HOH . C 3 HOH A 45 445 59 HOH HOH . C 3 HOH A 46 446 62 HOH HOH . C 3 HOH A 47 447 64 HOH HOH . C 3 HOH A 48 448 66 HOH HOH . C 3 HOH A 49 449 68 HOH HOH . C 3 HOH A 50 450 69 HOH HOH . C 3 HOH A 51 451 73 HOH HOH . C 3 HOH A 52 452 74 HOH HOH . C 3 HOH A 53 453 76 HOH HOH . C 3 HOH A 54 454 77 HOH HOH . C 3 HOH A 55 455 78 HOH HOH . C 3 HOH A 56 456 79 HOH HOH . C 3 HOH A 57 457 80 HOH HOH . C 3 HOH A 58 458 81 HOH HOH . C 3 HOH A 59 459 82 HOH HOH . C 3 HOH A 60 460 83 HOH HOH . C 3 HOH A 61 461 84 HOH HOH . C 3 HOH A 62 462 85 HOH HOH . C 3 HOH A 63 463 86 HOH HOH . C 3 HOH A 64 464 87 HOH HOH . C 3 HOH A 65 465 88 HOH HOH . C 3 HOH A 66 466 89 HOH HOH . C 3 HOH A 67 467 91 HOH HOH . C 3 HOH A 68 468 92 HOH HOH . C 3 HOH A 69 469 93 HOH HOH . C 3 HOH A 70 470 94 HOH HOH . C 3 HOH A 71 471 95 HOH HOH . C 3 HOH A 72 472 96 HOH HOH . C 3 HOH A 73 473 97 HOH HOH . C 3 HOH A 74 474 98 HOH HOH . C 3 HOH A 75 475 99 HOH HOH . C 3 HOH A 76 476 100 HOH HOH . C 3 HOH A 77 477 101 HOH HOH . C 3 HOH A 78 478 102 HOH HOH . C 3 HOH A 79 479 103 HOH HOH . C 3 HOH A 80 480 104 HOH HOH . C 3 HOH A 81 481 106 HOH HOH . C 3 HOH A 82 482 107 HOH HOH . C 3 HOH A 83 483 109 HOH HOH . C 3 HOH A 84 484 110 HOH HOH . C 3 HOH A 85 485 111 HOH HOH . C 3 HOH A 86 486 114 HOH HOH . C 3 HOH A 87 487 115 HOH HOH . C 3 HOH A 88 488 117 HOH HOH . C 3 HOH A 89 489 118 HOH HOH . C 3 HOH A 90 490 119 HOH HOH . C 3 HOH A 91 491 120 HOH HOH . C 3 HOH A 92 492 121 HOH HOH . C 3 HOH A 93 493 122 HOH HOH . C 3 HOH A 94 494 124 HOH HOH . C 3 HOH A 95 495 125 HOH HOH . C 3 HOH A 96 496 126 HOH HOH . C 3 HOH A 97 497 127 HOH HOH . C 3 HOH A 98 498 128 HOH HOH . C 3 HOH A 99 499 129 HOH HOH . C 3 HOH A 100 500 130 HOH HOH . C 3 HOH A 101 501 132 HOH HOH . C 3 HOH A 102 502 137 HOH HOH . C 3 HOH A 103 503 138 HOH HOH . C 3 HOH A 104 504 140 HOH HOH . C 3 HOH A 105 505 141 HOH HOH . C 3 HOH A 106 506 144 HOH HOH . C 3 HOH A 107 507 146 HOH HOH . C 3 HOH A 108 508 148 HOH HOH . C 3 HOH A 109 509 150 HOH HOH . C 3 HOH A 110 510 152 HOH HOH . C 3 HOH A 111 511 153 HOH HOH . C 3 HOH A 112 512 157 HOH HOH . C 3 HOH A 113 513 158 HOH HOH . C 3 HOH A 114 514 160 HOH HOH . C 3 HOH A 115 515 162 HOH HOH . C 3 HOH A 116 516 164 HOH HOH . C 3 HOH A 117 517 165 HOH HOH . C 3 HOH A 118 518 172 HOH HOH . C 3 HOH A 119 519 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 09E . . . B 2 24.367 37.475 41.468 1 43.83 ? C1 09E 4000 A 1 HETATM 2 C C2 09E . . . B 2 22.998 36.941 41.814 1 44.88 ? C2 09E 4000 A 1 HETATM 3 C C3 09E . . . B 2 24.924 37.843 40.235 1 41.02 ? C3 09E 4000 A 1 HETATM 4 C C4 09E . . . B 2 21.876 37.932 41.45 1 42.98 ? C4 09E 4000 A 1 HETATM 5 C C5 09E . . . B 2 26.262 38.289 40.237 1 41.63 ? C5 09E 4000 A 1 HETATM 6 C C6 09E . . . B 2 26.466 38 42.666 1 43.99 ? C6 09E 4000 A 1 HETATM 7 C C7 09E . . . B 2 20.879 37.092 40.64 1 43.54 ? C7 09E 4000 A 1 HETATM 8 C C8 09E . . . B 2 27.026 38.335 41.418 1 42.58 ? C8 09E 4000 A 1 HETATM 9 C C9 09E . . . B 2 19.709 36.569 41.509 1 44.14 ? C9 09E 4000 A 1 HETATM 10 N N1 09E . . . B 2 21.601 35.898 40.116 1 42.98 ? N1 09E 4000 A 1 HETATM 11 O O1 09E . . . B 2 19.14 35.479 41.436 1 45.12 ? O1 09E 4000 A 1 HETATM 12 C C10 09E . . . B 2 22.636 35.584 41.125 1 44.74 ? C10 09E 4000 A 1 HETATM 13 C C11 09E . . . B 2 23.089 36.732 43.352 1 45 ? C11 09E 4000 A 1 HETATM 14 O O2 09E . . . B 2 22.225 36.34 44.12 1 44.63 ? O2 09E 4000 A 1 HETATM 15 N N2 09E . . . B 2 24.366 37.135 43.775 1 45.42 ? N2 09E 4000 A 1 HETATM 16 C C12 09E . . . B 2 25.138 37.571 42.674 1 44.25 ? C12 09E 4000 A 1 HETATM 17 C C13 09E . . . B 2 18.243 37.22 43.299 1 43.08 ? C13 09E 4000 A 1 HETATM 18 C C14 09E . . . B 2 18.867 36.377 44.461 1 41.86 ? C14 09E 4000 A 1 HETATM 19 O O3 09E . . . B 2 19.302 37.515 42.411 1 42.13 ? O3 09E 4000 A 1 HETATM 20 C C15 09E . . . B 2 17.814 36.188 45.543 1 42.36 ? C15 09E 4000 A 1 HETATM 21 S S1 09E . . . B 2 17.535 37.643 46.377 1 43.26 ? S1 09E 4000 A 1 HETATM 22 C C16 09E . . . B 2 17.398 38.803 45.13 1 47.45 ? C16 09E 4000 A 1 HETATM 23 C C17 09E . . . B 2 17.698 38.569 43.742 1 45.57 ? C17 09E 4000 A 1 HETATM 24 C C18 09E . . . B 2 17.498 39.57 42.763 1 44.99 ? C18 09E 4000 A 1 HETATM 25 C C19 09E . . . B 2 17.001 40.798 43.161 1 46.41 ? C19 09E 4000 A 1 HETATM 26 C C20 09E . . . B 2 16.695 41.091 44.512 1 46.97 ? C20 09E 4000 A 1 HETATM 27 C C21 09E . . . B 2 16.874 40.098 45.485 1 47.61 ? C21 09E 4000 A 1 HETATM 28 BR BR1 09E . . . B 2 16.71 42.116 41.808 1 48.89 ? BR1 09E 4000 A 1 HETATM 29 O O4 09E . . . B 2 16.254 37.543 46.976 1 40.89 ? O4 09E 4000 A 1 HETATM 30 O O5 09E . . . B 2 18.67 37.889 47.199 1 44.32 ? O5 09E 4000 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #