data_3UE5 # _model_server_result.job_id B0Tu-LpphYOdUNWLwEM2hQ _model_server_result.datetime_utc '2024-11-16 02:22:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ue5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":382}' # _entry.id 3UE5 # _exptl.entry_id 3UE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.65 _cell.angle_gamma 90 _cell.entry_id 3UE5 _cell.length_a 84.837 _cell.length_b 53.551 _cell.length_c 100.578 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1,3 A,C,D,E,F,G 3 1,3 B,H 3 4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 4.650197 0 -100.470442 4 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 4.650197 0 -100.470442 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 374 A CYS 374 1_555 B SG CYS 37 B CYS 72 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 C CA CA . A CA 381 1_555 G O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc2 C CA CA . A CA 381 1_555 D O2G ATP . A ATP 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 C CA CA . A CA 381 1_555 D O1B ATP . A ATP 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc4 C CA CA . A CA 381 1_555 G O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc5 C CA CA . A CA 381 1_555 G O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3UE5 _atom_sites.fract_transf_matrix[1][1] 0.011787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000546 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 381 381 CA CA . D 4 ATP A 1 382 382 ATP ATP . E 5 CL A 1 376 1 CL CL . F 5 CL A 1 377 2 CL CL . G 6 HOH A 1 378 3 HOH HOH . G 6 HOH A 2 379 4 HOH HOH . G 6 HOH A 3 380 5 HOH HOH . G 6 HOH A 4 383 6 HOH HOH . G 6 HOH A 5 384 7 HOH HOH . G 6 HOH A 6 385 8 HOH HOH . G 6 HOH A 7 386 9 HOH HOH . G 6 HOH A 8 387 10 HOH HOH . G 6 HOH A 9 388 11 HOH HOH . G 6 HOH A 10 389 12 HOH HOH . G 6 HOH A 11 390 13 HOH HOH . G 6 HOH A 12 391 14 HOH HOH . G 6 HOH A 13 392 15 HOH HOH . G 6 HOH A 14 393 16 HOH HOH . G 6 HOH A 15 394 17 HOH HOH . G 6 HOH A 16 395 18 HOH HOH . G 6 HOH A 17 396 19 HOH HOH . G 6 HOH A 18 397 20 HOH HOH . G 6 HOH A 19 398 21 HOH HOH . G 6 HOH A 20 399 22 HOH HOH . G 6 HOH A 21 400 23 HOH HOH . G 6 HOH A 22 401 24 HOH HOH . G 6 HOH A 23 402 26 HOH HOH . G 6 HOH A 24 403 27 HOH HOH . G 6 HOH A 25 404 29 HOH HOH . G 6 HOH A 26 405 30 HOH HOH . G 6 HOH A 27 406 31 HOH HOH . G 6 HOH A 28 407 32 HOH HOH . G 6 HOH A 29 408 33 HOH HOH . G 6 HOH A 30 409 34 HOH HOH . G 6 HOH A 31 410 35 HOH HOH . G 6 HOH A 32 411 37 HOH HOH . G 6 HOH A 33 412 38 HOH HOH . G 6 HOH A 34 413 39 HOH HOH . G 6 HOH A 35 414 40 HOH HOH . G 6 HOH A 36 415 41 HOH HOH . G 6 HOH A 37 416 42 HOH HOH . H 6 HOH B 1 25 25 HOH HOH . H 6 HOH B 2 28 28 HOH HOH . H 6 HOH B 3 102 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 16.243 -13.268 -28.39 1 32.39 ? PG ATP 382 A 1 HETATM 2 O O1G ATP . . . D 4 16.961 -12.783 -27.171 1 32.51 ? O1G ATP 382 A 1 HETATM 3 O O2G ATP . . . D 4 14.73 -13.606 -27.937 1 31.6 ? O2G ATP 382 A 1 HETATM 4 O O3G ATP . . . D 4 17.014 -14.524 -28.974 1 32.04 ? O3G ATP 382 A 1 HETATM 5 P PB ATP . . . D 4 14.861 -11.222 -29.692 1 29.68 ? PB ATP 382 A 1 HETATM 6 O O1B ATP . . . D 4 14.12 -11.094 -28.406 1 28.59 ? O1B ATP 382 A 1 HETATM 7 O O2B ATP . . . D 4 15.426 -9.807 -30.174 1 29.9 ? O2B ATP 382 A 1 HETATM 8 O O3B ATP . . . D 4 16.287 -12.133 -29.613 1 30.15 ? O3B ATP 382 A 1 HETATM 9 P PA ATP . . . D 4 12.645 -11.696 -31.237 1 27.8 ? PA ATP 382 A 1 HETATM 10 O O1A ATP . . . D 4 11.56 -12.483 -30.53 1 27.9 ? O1A ATP 382 A 1 HETATM 11 O O2A ATP . . . D 4 12.303 -10.119 -31.204 1 27.67 ? O2A ATP 382 A 1 HETATM 12 O O3A ATP . . . D 4 14.116 -12.097 -30.813 1 29.14 ? O3A ATP 382 A 1 HETATM 13 O O5' ATP . . . D 4 12.548 -12.132 -32.788 1 30.04 ? O5' ATP 382 A 1 HETATM 14 C C5' ATP . . . D 4 13.523 -11.488 -33.625 1 30.34 ? C5' ATP 382 A 1 HETATM 15 C C4' ATP . . . D 4 13.954 -12.522 -34.682 1 30.32 ? C4' ATP 382 A 1 HETATM 16 O O4' ATP . . . D 4 12.749 -13.015 -35.297 1 30.12 ? O4' ATP 382 A 1 HETATM 17 C C3' ATP . . . D 4 14.777 -11.966 -35.842 1 31.61 ? C3' ATP 382 A 1 HETATM 18 O O3' ATP . . . D 4 15.784 -12.951 -36.191 1 33.15 ? O3' ATP 382 A 1 HETATM 19 C C2' ATP . . . D 4 13.684 -11.879 -36.945 1 31.18 ? C2' ATP 382 A 1 HETATM 20 O O2' ATP . . . D 4 14.106 -11.945 -38.301 1 33.3 ? O2' ATP 382 A 1 HETATM 21 C C1' ATP . . . D 4 12.915 -13.136 -36.684 1 29.49 ? C1' ATP 382 A 1 HETATM 22 N N9 ATP . . . D 4 11.6 -12.916 -37.234 1 29.13 ? N9 ATP 382 A 1 HETATM 23 C C8 ATP . . . D 4 10.735 -11.856 -37.017 1 28.63 ? C8 ATP 382 A 1 HETATM 24 N N7 ATP . . . D 4 9.622 -12.011 -37.71 1 28.37 ? N7 ATP 382 A 1 HETATM 25 C C5 ATP . . . D 4 9.71 -13.185 -38.415 1 29.06 ? C5 ATP 382 A 1 HETATM 26 C C6 ATP . . . D 4 8.851 -13.888 -39.281 1 29.13 ? C6 ATP 382 A 1 HETATM 27 N N6 ATP . . . D 4 7.615 -13.365 -39.62 1 28.83 ? N6 ATP 382 A 1 HETATM 28 N N1 ATP . . . D 4 9.256 -15.068 -39.743 1 30.37 ? N1 ATP 382 A 1 HETATM 29 C C2 ATP . . . D 4 10.47 -15.575 -39.449 1 30.2 ? C2 ATP 382 A 1 HETATM 30 N N3 ATP . . . D 4 11.339 -14.961 -38.651 1 29.53 ? N3 ATP 382 A 1 HETATM 31 C C4 ATP . . . D 4 10.993 -13.776 -38.115 1 28.95 ? C4 ATP 382 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #