data_3UE6 # _model_server_result.job_id FbfGu3PreX4LBbHxyjmEmw _model_server_result.datetime_utc '2024-11-07 08:55:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ue6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":500}' # _entry.id 3UE6 # _exptl.entry_id 3UE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UE6 _cell.length_a 73.987 _cell.length_b 73.987 _cell.length_c 177.468 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA hexameric 6 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,O,P 1 1 C,D,J,K,Q 2 1 E,F,L,M,N,R,S 3 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3UE6 _atom_sites.fract_transf_matrix[1][1] 0.013516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FMN A 1 500 500 FMN FMN . H 2 FMN B 1 401 500 FMN FMN . I 3 PO4 B 1 402 2 PO4 PO4 . J 2 FMN C 1 500 500 FMN FMN . K 2 FMN D 1 500 500 FMN FMN . L 2 FMN E 1 500 500 FMN FMN . M 2 FMN F 1 401 500 FMN FMN . N 3 PO4 F 1 402 1 PO4 PO4 . O 4 HOH A 1 601 1 HOH HOH . O 4 HOH A 2 602 22 HOH HOH . O 4 HOH A 3 603 56 HOH HOH . O 4 HOH A 4 604 58 HOH HOH . O 4 HOH A 5 605 59 HOH HOH . O 4 HOH A 6 606 88 HOH HOH . O 4 HOH A 7 607 89 HOH HOH . O 4 HOH A 8 608 90 HOH HOH . O 4 HOH A 9 609 91 HOH HOH . O 4 HOH A 10 610 92 HOH HOH . O 4 HOH A 11 611 93 HOH HOH . O 4 HOH A 12 612 114 HOH HOH . O 4 HOH A 13 613 121 HOH HOH . O 4 HOH A 14 614 123 HOH HOH . O 4 HOH A 15 615 124 HOH HOH . O 4 HOH A 16 616 125 HOH HOH . O 4 HOH A 17 617 126 HOH HOH . O 4 HOH A 18 618 127 HOH HOH . O 4 HOH A 19 619 128 HOH HOH . O 4 HOH A 20 620 129 HOH HOH . O 4 HOH A 21 621 130 HOH HOH . O 4 HOH A 22 622 131 HOH HOH . O 4 HOH A 23 623 117 HOH HOH . P 4 HOH B 1 501 33 HOH HOH . P 4 HOH B 2 502 84 HOH HOH . P 4 HOH B 3 503 85 HOH HOH . P 4 HOH B 4 504 86 HOH HOH . P 4 HOH B 5 505 87 HOH HOH . P 4 HOH B 6 506 94 HOH HOH . P 4 HOH B 7 507 95 HOH HOH . P 4 HOH B 8 508 96 HOH HOH . P 4 HOH B 9 509 97 HOH HOH . P 4 HOH B 10 510 98 HOH HOH . P 4 HOH B 11 511 99 HOH HOH . P 4 HOH B 12 512 100 HOH HOH . P 4 HOH B 13 513 101 HOH HOH . P 4 HOH B 14 514 102 HOH HOH . P 4 HOH B 15 515 103 HOH HOH . P 4 HOH B 16 516 122 HOH HOH . P 4 HOH B 17 517 132 HOH HOH . P 4 HOH B 18 518 133 HOH HOH . P 4 HOH B 19 519 1 HOH HOH . Q 4 HOH C 1 601 104 HOH HOH . R 4 HOH E 1 601 64 HOH HOH . R 4 HOH E 2 602 105 HOH HOH . R 4 HOH E 3 603 106 HOH HOH . R 4 HOH E 4 604 107 HOH HOH . R 4 HOH E 5 605 111 HOH HOH . R 4 HOH E 6 606 112 HOH HOH . R 4 HOH E 7 607 113 HOH HOH . R 4 HOH E 8 608 115 HOH HOH . R 4 HOH E 9 609 2 HOH HOH . S 4 HOH F 1 501 66 HOH HOH . S 4 HOH F 2 502 67 HOH HOH . S 4 HOH F 3 503 69 HOH HOH . S 4 HOH F 4 504 78 HOH HOH . S 4 HOH F 5 505 79 HOH HOH . S 4 HOH F 6 506 80 HOH HOH . S 4 HOH F 7 507 81 HOH HOH . S 4 HOH F 8 508 82 HOH HOH . S 4 HOH F 9 509 83 HOH HOH . S 4 HOH F 10 510 108 HOH HOH . S 4 HOH F 11 511 109 HOH HOH . S 4 HOH F 12 512 110 HOH HOH . S 4 HOH F 13 513 116 HOH HOH . S 4 HOH F 14 514 118 HOH HOH . S 4 HOH F 15 515 119 HOH HOH . S 4 HOH F 16 516 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . L 2 22.743 -17.283 -18.69 1 72.97 ? N1 FMN 500 E 1 HETATM 2 C C2 FMN . . . L 2 21.982 -17.543 -19.81 1 67.37 ? C2 FMN 500 E 1 HETATM 3 O O2 FMN . . . L 2 21.716 -16.636 -20.594 1 66.13 ? O2 FMN 500 E 1 HETATM 4 N N3 FMN . . . L 2 21.519 -18.818 -20.049 1 65.27 ? N3 FMN 500 E 1 HETATM 5 C C4 FMN . . . L 2 21.819 -19.84 -19.172 1 65.86 ? C4 FMN 500 E 1 HETATM 6 O O4 FMN . . . L 2 21.405 -20.977 -19.39 1 57.24 ? O4 FMN 500 E 1 HETATM 7 C C4A FMN . . . L 2 22.588 -19.582 -18.04 1 76.01 ? C4A FMN 500 E 1 HETATM 8 N N5 FMN . . . L 2 22.897 -20.593 -17.149 1 83.43 ? N5 FMN 500 E 1 HETATM 9 C C5A FMN . . . L 2 23.66 -20.322 -16.029 1 84.57 ? C5A FMN 500 E 1 HETATM 10 C C6 FMN . . . L 2 23.964 -21.347 -15.139 1 90.62 ? C6 FMN 500 E 1 HETATM 11 C C7 FMN . . . L 2 24.729 -21.09 -14.008 1 88.62 ? C7 FMN 500 E 1 HETATM 12 C C7M FMN . . . L 2 25.059 -22.193 -13.043 1 84.05 ? C7M FMN 500 E 1 HETATM 13 C C8 FMN . . . L 2 25.189 -19.803 -13.769 1 86.56 ? C8 FMN 500 E 1 HETATM 14 C C8M FMN . . . L 2 26.014 -19.53 -12.547 1 85.72 ? C8M FMN 500 E 1 HETATM 15 C C9 FMN . . . L 2 24.886 -18.776 -14.658 1 87.45 ? C9 FMN 500 E 1 HETATM 16 C C9A FMN . . . L 2 24.119 -19.031 -15.792 1 83.5 ? C9A FMN 500 E 1 HETATM 17 N N10 FMN . . . L 2 23.818 -18.023 -16.693 1 72.66 ? N10 FMN 500 E 1 HETATM 18 C C10 FMN . . . L 2 23.047 -18.295 -17.804 1 70.18 ? C10 FMN 500 E 1 HETATM 19 C C1' FMN . . . L 2 24.274 -16.612 -16.459 1 71.39 ? C1' FMN 500 E 1 HETATM 20 C C2' FMN . . . L 2 25.63 -16.267 -17.052 1 71.55 ? C2' FMN 500 E 1 HETATM 21 O O2' FMN . . . L 2 26.557 -17.285 -16.767 1 71.37 ? O2' FMN 500 E 1 HETATM 22 C C3' FMN . . . L 2 26.106 -14.948 -16.45 1 74.34 ? C3' FMN 500 E 1 HETATM 23 O O3' FMN . . . L 2 26.133 -15.044 -15.043 1 72.69 ? O3' FMN 500 E 1 HETATM 24 C C4' FMN . . . L 2 25.19 -13.803 -16.871 1 77.64 ? C4' FMN 500 E 1 HETATM 25 O O4' FMN . . . L 2 25.292 -13.628 -18.264 1 82.32 ? O4' FMN 500 E 1 HETATM 26 C C5' FMN . . . L 2 25.546 -12.485 -16.192 1 79.24 ? C5' FMN 500 E 1 HETATM 27 O O5' FMN . . . L 2 26.949 -12.342 -16.161 1 86.2 ? O5' FMN 500 E 1 HETATM 28 P P FMN . . . L 2 27.709 -11.299 -17.126 1 73.86 ? P FMN 500 E 1 HETATM 29 O O1P FMN . . . L 2 27.481 -11.733 -18.554 1 79.85 ? O1P FMN 500 E 1 HETATM 30 O O2P FMN . . . L 2 29.187 -11.305 -16.827 1 75.73 ? O2P FMN 500 E 1 HETATM 31 O O3P FMN . . . L 2 27.165 -9.904 -16.941 1 73.69 ? O3P FMN 500 E 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #