data_3UEL
#
_model_server_result.job_id            pLV9tBDn273DLkw_8jN5vQ 
_model_server_result.datetime_utc      '2024-11-15 04:06:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3uel 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    3UEL 
#
_exptl.entry_id    3UEL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              542.332 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UEL 
_cell.length_a            130.773 
_cell.length_b            195.989 
_cell.length_c            163.45 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UEL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,E 2 1 
C,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C15 H24 N6 O12 P2' 
_chem_comp.formula_weight    542.332 
_chem_comp.id                A1R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 A1R doub 1 n y 
N1 C6 A1R sing 2 n y 
C2 N3 A1R sing 3 n y 
C2 H2 A1R sing 4 n n 
N3 C4 A1R doub 5 n y 
C4 C5 A1R sing 6 n y 
C4 N9 A1R sing 7 n y 
C5 C6 A1R doub 8 n y 
C5 N7 A1R sing 9 n y 
C6 N6 A1R sing 10 n n 
N6 HN61 A1R sing 11 n n 
N6 HN62 A1R sing 12 n n 
N7 C8 A1R doub 13 n y 
C8 N9 A1R sing 14 n y 
C8 H8 A1R sing 15 n n 
N9 C1' A1R sing 16 n n 
C1' O4' A1R sing 17 n n 
C1' C2' A1R sing 18 n n 
C1' H1' A1R sing 19 n n 
C2' O2' A1R sing 20 n n 
C2' C3' A1R sing 21 n n 
C2' H2' A1R sing 22 n n 
O2' HO2' A1R sing 23 n n 
C3' C4' A1R sing 24 n n 
C3' O3' A1R sing 25 n n 
C3' H3' A1R sing 26 n n 
O3' HO3' A1R sing 27 n n 
O4' C4' A1R sing 28 n n 
C4' C5' A1R sing 29 n n 
C4' H4' A1R sing 30 n n 
C5' O5' A1R sing 31 n n 
C5' "H5'1" A1R sing 32 n n 
C5' "H5'2" A1R sing 33 n n 
O5' PA A1R sing 34 n n 
PA O3A A1R sing 35 n n 
PA O1A A1R doub 36 n n 
PA O2A A1R sing 37 n n 
O2A HO2A A1R sing 38 n n 
O3A PB A1R sing 39 n n 
PB O2B A1R doub 40 n n 
PB O1B A1R sing 41 n n 
PB O5N A1R sing 42 n n 
O1B HO1B A1R sing 43 n n 
O5N C5N A1R sing 44 n n 
C5N C4N A1R sing 45 n n 
C5N H5N1 A1R sing 46 n n 
C5N H5N2 A1R sing 47 n n 
N4N C4N A1R sing 48 n n 
N4N C1N A1R sing 49 n n 
N4N HN4N A1R sing 50 n n 
C1N C2N A1R sing 51 n n 
C1N H1N1 A1R sing 52 n n 
C1N H1N2 A1R sing 53 n n 
O2N C2N A1R sing 54 n n 
O2N HO2N A1R sing 55 n n 
C2N C3N A1R sing 56 n n 
C2N H2N A1R sing 57 n n 
O3N C3N A1R sing 58 n n 
O3N HO3N A1R sing 59 n n 
C3N C4N A1R sing 60 n n 
C3N H3N A1R sing 61 n n 
C4N H4N A1R sing 62 n n 
#
_atom_sites.entry_id                     3UEL 
_atom_sites.fract_transf_matrix[1][1]    0.007647 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005102 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006118 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 A1R A 1 1001 1001 A1R A1R . 
E 2 A1R B 1 1001 1001 A1R A1R . 
F 2 A1R C 1 1001 1001 A1R A1R . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 A1R . . . D 2 40.043 41.879 4.504 1 72.85 ? N1 A1R 1001 A 1 
HETATM 2 C C2 A1R . . . D 2 40.651 43.069 4.676 1 80.21 ? C2 A1R 1001 A 1 
HETATM 3 N N3 A1R . . . D 2 40.994 43.58 5.877 1 80.69 ? N3 A1R 1001 A 1 
HETATM 4 C C4 A1R . . . D 2 40.758 42.899 7.023 1 78.71 ? C4 A1R 1001 A 1 
HETATM 5 C C5 A1R . . . D 2 40.087 41.591 6.929 1 76.98 ? C5 A1R 1001 A 1 
HETATM 6 C C6 A1R . . . D 2 39.739 41.114 5.555 1 74.79 ? C6 A1R 1001 A 1 
HETATM 7 N N6 A1R . . . D 2 39.138 39.939 5.312 1 83.5 ? N6 A1R 1001 A 1 
HETATM 8 N N7 A1R . . . D 2 39.965 41.151 8.206 1 75.2 ? N7 A1R 1001 A 1 
HETATM 9 C C8 A1R . . . D 2 40.504 42.094 9.026 1 76.07 ? C8 A1R 1001 A 1 
HETATM 10 N N9 A1R . . . D 2 40.991 43.144 8.319 1 77.93 ? N9 A1R 1001 A 1 
HETATM 11 C C1' A1R . . . D 2 41.627 44.404 8.83 1 75.47 ? C1' A1R 1001 A 1 
HETATM 12 C C2' A1R . . . D 2 41.035 44.826 10.17 1 76.94 ? C2' A1R 1001 A 1 
HETATM 13 O O2' A1R . . . D 2 41.107 46.249 10.293 1 76.55 ? O2' A1R 1001 A 1 
HETATM 14 C C3' A1R . . . D 2 41.927 44.156 11.177 1 71.7 ? C3' A1R 1001 A 1 
HETATM 15 O O3' A1R . . . D 2 41.864 44.754 12.469 1 80.51 ? O3' A1R 1001 A 1 
HETATM 16 O O4' A1R . . . D 2 43.012 44.254 9.058 1 64.18 ? O4' A1R 1001 A 1 
HETATM 17 C C4' A1R . . . D 2 43.257 44.326 10.463 1 71.49 ? C4' A1R 1001 A 1 
HETATM 18 C C5' A1R . . . D 2 44.284 43.282 10.833 1 71.08 ? C5' A1R 1001 A 1 
HETATM 19 O O5' A1R . . . D 2 43.682 42.025 11.149 1 67.03 ? O5' A1R 1001 A 1 
HETATM 20 P PA A1R . . . D 2 44.522 41.173 12.213 1 74.5 ? PA A1R 1001 A 1 
HETATM 21 O O1A A1R . . . D 2 44.429 39.662 12.019 1 74.97 ? O1A A1R 1001 A 1 
HETATM 22 O O2A A1R . . . D 2 44.192 41.796 13.555 1 69.89 ? O2A A1R 1001 A 1 
HETATM 23 O O3A A1R . . . D 2 45.957 41.608 11.58 1 72.17 ? O3A A1R 1001 A 1 
HETATM 24 P PB A1R . . . D 2 47.294 41.851 12.417 1 69.84 ? PB A1R 1001 A 1 
HETATM 25 O O1B A1R . . . D 2 47.085 43.214 13.003 1 65.53 ? O1B A1R 1001 A 1 
HETATM 26 O O2B A1R . . . D 2 48.54 41.563 11.588 1 65.42 ? O2B A1R 1001 A 1 
HETATM 27 O O5N A1R . . . D 2 47.17 40.681 13.541 1 77.09 ? O5N A1R 1001 A 1 
HETATM 28 C C5N A1R . . . D 2 48.151 39.631 13.488 1 83.76 ? C5N A1R 1001 A 1 
HETATM 29 N N4N A1R . . . D 2 46.543 38.057 14.557 1 85.63 ? N4N A1R 1001 A 1 
HETATM 30 C C1N A1R . . . D 2 46.19 36.783 13.972 1 86.41 ? C1N A1R 1001 A 1 
HETATM 31 O O2N A1R . . . D 2 47.765 34.969 14.035 1 90.19 ? O2N A1R 1001 A 1 
HETATM 32 C C2N A1R . . . D 2 47.497 36.223 13.426 1 85.5 ? C2N A1R 1001 A 1 
HETATM 33 O O3N A1R . . . D 2 49.399 36.526 14.77 1 80.64 ? O3N A1R 1001 A 1 
HETATM 34 C C3N A1R . . . D 2 48.594 37.186 13.81 1 81.72 ? C3N A1R 1001 A 1 
HETATM 35 C C4N A1R . . . D 2 47.932 38.428 14.408 1 83.27 ? C4N A1R 1001 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#