data_3UEL
#
_model_server_result.job_id            PziVbCcwFVcGA2gmSpxFtw 
_model_server_result.datetime_utc      '2024-11-15 03:45:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3uel 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1001}' 
#
_entry.id    3UEL 
#
_exptl.entry_id    3UEL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              542.332 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UEL 
_cell.length_a            130.773 
_cell.length_b            195.989 
_cell.length_c            163.45 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UEL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,E 2 1 
C,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C15 H24 N6 O12 P2' 
_chem_comp.formula_weight    542.332 
_chem_comp.id                A1R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 A1R doub 1 n y 
N1 C6 A1R sing 2 n y 
C2 N3 A1R sing 3 n y 
C2 H2 A1R sing 4 n n 
N3 C4 A1R doub 5 n y 
C4 C5 A1R sing 6 n y 
C4 N9 A1R sing 7 n y 
C5 C6 A1R doub 8 n y 
C5 N7 A1R sing 9 n y 
C6 N6 A1R sing 10 n n 
N6 HN61 A1R sing 11 n n 
N6 HN62 A1R sing 12 n n 
N7 C8 A1R doub 13 n y 
C8 N9 A1R sing 14 n y 
C8 H8 A1R sing 15 n n 
N9 C1' A1R sing 16 n n 
C1' O4' A1R sing 17 n n 
C1' C2' A1R sing 18 n n 
C1' H1' A1R sing 19 n n 
C2' O2' A1R sing 20 n n 
C2' C3' A1R sing 21 n n 
C2' H2' A1R sing 22 n n 
O2' HO2' A1R sing 23 n n 
C3' C4' A1R sing 24 n n 
C3' O3' A1R sing 25 n n 
C3' H3' A1R sing 26 n n 
O3' HO3' A1R sing 27 n n 
O4' C4' A1R sing 28 n n 
C4' C5' A1R sing 29 n n 
C4' H4' A1R sing 30 n n 
C5' O5' A1R sing 31 n n 
C5' "H5'1" A1R sing 32 n n 
C5' "H5'2" A1R sing 33 n n 
O5' PA A1R sing 34 n n 
PA O3A A1R sing 35 n n 
PA O1A A1R doub 36 n n 
PA O2A A1R sing 37 n n 
O2A HO2A A1R sing 38 n n 
O3A PB A1R sing 39 n n 
PB O2B A1R doub 40 n n 
PB O1B A1R sing 41 n n 
PB O5N A1R sing 42 n n 
O1B HO1B A1R sing 43 n n 
O5N C5N A1R sing 44 n n 
C5N C4N A1R sing 45 n n 
C5N H5N1 A1R sing 46 n n 
C5N H5N2 A1R sing 47 n n 
N4N C4N A1R sing 48 n n 
N4N C1N A1R sing 49 n n 
N4N HN4N A1R sing 50 n n 
C1N C2N A1R sing 51 n n 
C1N H1N1 A1R sing 52 n n 
C1N H1N2 A1R sing 53 n n 
O2N C2N A1R sing 54 n n 
O2N HO2N A1R sing 55 n n 
C2N C3N A1R sing 56 n n 
C2N H2N A1R sing 57 n n 
O3N C3N A1R sing 58 n n 
O3N HO3N A1R sing 59 n n 
C3N C4N A1R sing 60 n n 
C3N H3N A1R sing 61 n n 
C4N H4N A1R sing 62 n n 
#
_atom_sites.entry_id                     3UEL 
_atom_sites.fract_transf_matrix[1][1]    0.007647 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005102 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006118 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 A1R A 1 1001 1001 A1R A1R . 
E 2 A1R B 1 1001 1001 A1R A1R . 
F 2 A1R C 1 1001 1001 A1R A1R . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 A1R . . . E 2 96.212 42.451 20.679 1 64.01 ? N1 A1R 1001 B 1 
HETATM 2 C C2 A1R . . . E 2 95.608 43.596 20.31 1 62.7 ? C2 A1R 1001 B 1 
HETATM 3 N N3 A1R . . . E 2 95.514 43.997 19.03 1 67.13 ? N3 A1R 1001 B 1 
HETATM 4 C C4 A1R . . . E 2 96.022 43.225 18.044 1 63.09 ? C4 A1R 1001 B 1 
HETATM 5 C C5 A1R . . . E 2 96.684 41.966 18.368 1 62.35 ? C5 A1R 1001 B 1 
HETATM 6 C C6 A1R . . . E 2 96.764 41.6 19.782 1 68.13 ? C6 A1R 1001 B 1 
HETATM 7 N N6 A1R . . . E 2 97.352 40.425 20.126 1 73.8 ? N6 A1R 1001 B 1 
HETATM 8 N N7 A1R . . . E 2 97.093 41.417 17.231 1 63.43 ? N7 A1R 1001 B 1 
HETATM 9 C C8 A1R . . . E 2 96.741 42.274 16.249 1 64.59 ? C8 A1R 1001 B 1 
HETATM 10 N N9 A1R . . . E 2 96.076 43.342 16.734 1 63.74 ? N9 A1R 1001 B 1 
HETATM 11 C C1' A1R . . . E 2 95.569 44.553 16.011 1 67.47 ? C1' A1R 1001 B 1 
HETATM 12 C C2' A1R . . . E 2 96.429 44.763 14.778 1 66.65 ? C2' A1R 1001 B 1 
HETATM 13 O O2' A1R . . . E 2 96.566 46.173 14.542 1 72.59 ? O2' A1R 1001 B 1 
HETATM 14 C C3' A1R . . . E 2 95.62 44.058 13.722 1 61.97 ? C3' A1R 1001 B 1 
HETATM 15 O O3' A1R . . . E 2 95.854 44.614 12.438 1 64.67 ? O3' A1R 1001 B 1 
HETATM 16 O O4' A1R . . . E 2 94.218 44.588 15.552 1 63.86 ? O4' A1R 1001 B 1 
HETATM 17 C C4' A1R . . . E 2 94.184 44.262 14.174 1 61.51 ? C4' A1R 1001 B 1 
HETATM 18 C C5' A1R . . . E 2 93.35 43.005 14.072 1 61.87 ? C5' A1R 1001 B 1 
HETATM 19 O O5' A1R . . . E 2 93.868 42.179 13.051 1 67.5 ? O5' A1R 1001 B 1 
HETATM 20 P PA A1R . . . E 2 92.939 41.144 12.295 1 70.03 ? PA A1R 1001 B 1 
HETATM 21 O O1A A1R . . . E 2 93.408 39.745 12.614 1 75.47 ? O1A A1R 1001 B 1 
HETATM 22 O O2A A1R . . . E 2 92.927 41.683 10.894 1 69.59 ? O2A A1R 1001 B 1 
HETATM 23 O O3A A1R . . . E 2 91.496 41.341 12.953 1 67.45 ? O3A A1R 1001 B 1 
HETATM 24 P PB A1R . . . E 2 90.254 41.535 11.952 1 75.41 ? PB A1R 1001 B 1 
HETATM 25 O O1B A1R . . . E 2 90.581 42.721 11.068 1 72.97 ? O1B A1R 1001 B 1 
HETATM 26 O O2B A1R . . . E 2 88.918 41.412 12.706 1 64.78 ? O2B A1R 1001 B 1 
HETATM 27 O O5N A1R . . . E 2 90.385 40.224 11.011 1 77.83 ? O5N A1R 1001 B 1 
HETATM 28 C C5N A1R . . . E 2 89.631 39.078 11.399 1 78.27 ? C5N A1R 1001 B 1 
HETATM 29 N N4N A1R . . . E 2 90.996 37.408 10.215 1 75.46 ? N4N A1R 1001 B 1 
HETATM 30 C C1N A1R . . . E 2 91.205 36.146 10.885 1 74.08 ? C1N A1R 1001 B 1 
HETATM 31 O O2N A1R . . . E 2 89.5 34.572 11.666 1 69.59 ? O2N A1R 1001 B 1 
HETATM 32 C C2N A1R . . . E 2 89.918 35.933 11.673 1 74.34 ? C2N A1R 1001 B 1 
HETATM 33 O O3N A1R . . . E 2 88.235 36.023 9.953 1 66.79 ? O3N A1R 1001 B 1 
HETATM 34 C C3N A1R . . . E 2 88.886 36.784 10.97 1 75.1 ? C3N A1R 1001 B 1 
HETATM 35 C C4N A1R . . . E 2 89.674 37.947 10.39 1 73.6 ? C4N A1R 1001 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#