data_3UEM # _model_server_result.job_id 7q6e9E5fG9flJiahAoq7Lw _model_server_result.datetime_utc '2024-12-22 02:22:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2815}' # _entry.id 3UEM # _exptl.entry_id 3UEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,5S)-1,2-DITHIANE-4,5-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UEM _cell.length_a 63.585 _cell.length_b 76.076 _cell.length_c 79.656 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H8 O2 S2' _chem_comp.formula_weight 152.235 _chem_comp.id D1D _chem_comp.mon_nstd_flag . _chem_comp.name (4S,5S)-1,2-DITHIANE-4,5-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 D1D sing 83 n n S1 S4 D1D sing 84 n n C1 C2 D1D sing 85 n n C1 H1C1 D1D sing 86 n n C1 H1C2 D1D sing 87 n n C2 O2 D1D sing 88 n n C2 C3 D1D sing 89 n n C2 H2 D1D sing 90 n n O2 HA D1D sing 91 n n C3 O3 D1D sing 92 n n C3 C4 D1D sing 93 n n C3 H3 D1D sing 94 n n O3 HB D1D sing 95 n n C4 S4 D1D sing 96 n n C4 H4C1 D1D sing 97 n n C4 H4C2 D1D sing 98 n n # _atom_sites.entry_id 3UEM _atom_sites.fract_transf_matrix[1][1] 0.015727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D1D A 1 2815 2815 D1D D1D . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 4 4 HOH HOH . C 3 HOH A 3 7 7 HOH HOH . C 3 HOH A 4 10 10 HOH HOH . C 3 HOH A 5 12 12 HOH HOH . C 3 HOH A 6 14 14 HOH HOH . C 3 HOH A 7 16 16 HOH HOH . C 3 HOH A 8 18 18 HOH HOH . C 3 HOH A 9 19 19 HOH HOH . C 3 HOH A 10 21 21 HOH HOH . C 3 HOH A 11 22 22 HOH HOH . C 3 HOH A 12 23 23 HOH HOH . C 3 HOH A 13 25 25 HOH HOH . C 3 HOH A 14 28 28 HOH HOH . C 3 HOH A 15 30 30 HOH HOH . C 3 HOH A 16 35 35 HOH HOH . C 3 HOH A 17 36 36 HOH HOH . C 3 HOH A 18 38 38 HOH HOH . C 3 HOH A 19 39 39 HOH HOH . C 3 HOH A 20 41 41 HOH HOH . C 3 HOH A 21 42 42 HOH HOH . C 3 HOH A 22 44 44 HOH HOH . C 3 HOH A 23 45 45 HOH HOH . C 3 HOH A 24 46 46 HOH HOH . C 3 HOH A 25 48 48 HOH HOH . C 3 HOH A 26 49 49 HOH HOH . C 3 HOH A 27 52 52 HOH HOH . C 3 HOH A 28 53 53 HOH HOH . C 3 HOH A 29 54 54 HOH HOH . C 3 HOH A 30 55 55 HOH HOH . C 3 HOH A 31 57 57 HOH HOH . C 3 HOH A 32 58 58 HOH HOH . C 3 HOH A 33 59 59 HOH HOH . C 3 HOH A 34 60 60 HOH HOH . C 3 HOH A 35 61 61 HOH HOH . C 3 HOH A 36 62 62 HOH HOH . C 3 HOH A 37 63 63 HOH HOH . C 3 HOH A 38 68 68 HOH HOH . C 3 HOH A 39 71 71 HOH HOH . C 3 HOH A 40 73 73 HOH HOH . C 3 HOH A 41 74 74 HOH HOH . C 3 HOH A 42 75 75 HOH HOH . C 3 HOH A 43 84 84 HOH HOH . C 3 HOH A 44 85 85 HOH HOH . C 3 HOH A 45 86 86 HOH HOH . C 3 HOH A 46 88 88 HOH HOH . C 3 HOH A 47 94 94 HOH HOH . C 3 HOH A 48 97 97 HOH HOH . C 3 HOH A 49 104 104 HOH HOH . C 3 HOH A 50 105 105 HOH HOH . C 3 HOH A 51 106 106 HOH HOH . C 3 HOH A 52 107 107 HOH HOH . C 3 HOH A 53 108 108 HOH HOH . C 3 HOH A 54 109 109 HOH HOH . C 3 HOH A 55 110 110 HOH HOH . C 3 HOH A 56 111 111 HOH HOH . C 3 HOH A 57 115 115 HOH HOH . C 3 HOH A 58 118 118 HOH HOH . C 3 HOH A 59 480 120 HOH HOH . C 3 HOH A 60 481 126 HOH HOH . C 3 HOH A 61 482 129 HOH HOH . C 3 HOH A 62 483 132 HOH HOH . C 3 HOH A 63 484 133 HOH HOH . C 3 HOH A 64 485 134 HOH HOH . C 3 HOH A 65 486 135 HOH HOH . C 3 HOH A 66 487 136 HOH HOH . C 3 HOH A 67 488 137 HOH HOH . C 3 HOH A 68 489 141 HOH HOH . C 3 HOH A 69 490 143 HOH HOH . C 3 HOH A 70 491 144 HOH HOH . C 3 HOH A 71 492 145 HOH HOH . C 3 HOH A 72 493 147 HOH HOH . C 3 HOH A 73 494 148 HOH HOH . C 3 HOH A 74 495 151 HOH HOH . C 3 HOH A 75 496 153 HOH HOH . C 3 HOH A 76 497 157 HOH HOH . C 3 HOH A 77 498 159 HOH HOH . C 3 HOH A 78 499 162 HOH HOH . C 3 HOH A 79 500 165 HOH HOH . C 3 HOH A 80 501 168 HOH HOH . C 3 HOH A 81 502 169 HOH HOH . C 3 HOH A 82 503 170 HOH HOH . C 3 HOH A 83 504 171 HOH HOH . C 3 HOH A 84 505 172 HOH HOH . C 3 HOH A 85 506 173 HOH HOH . C 3 HOH A 86 507 174 HOH HOH . C 3 HOH A 87 508 175 HOH HOH . C 3 HOH A 88 509 176 HOH HOH . C 3 HOH A 89 510 177 HOH HOH . C 3 HOH A 90 511 178 HOH HOH . C 3 HOH A 91 512 179 HOH HOH . C 3 HOH A 92 513 180 HOH HOH . C 3 HOH A 93 514 181 HOH HOH . C 3 HOH A 94 515 182 HOH HOH . C 3 HOH A 95 516 183 HOH HOH . C 3 HOH A 96 517 184 HOH HOH . C 3 HOH A 97 518 185 HOH HOH . C 3 HOH A 98 519 186 HOH HOH . C 3 HOH A 99 520 187 HOH HOH . C 3 HOH A 100 521 188 HOH HOH . C 3 HOH A 101 522 189 HOH HOH . C 3 HOH A 102 523 191 HOH HOH . C 3 HOH A 103 524 192 HOH HOH . C 3 HOH A 104 525 193 HOH HOH . C 3 HOH A 105 526 194 HOH HOH . C 3 HOH A 106 527 195 HOH HOH . C 3 HOH A 107 528 197 HOH HOH . C 3 HOH A 108 529 198 HOH HOH . C 3 HOH A 109 530 199 HOH HOH . C 3 HOH A 110 531 200 HOH HOH . C 3 HOH A 111 532 201 HOH HOH . C 3 HOH A 112 533 202 HOH HOH . C 3 HOH A 113 534 203 HOH HOH . C 3 HOH A 114 535 204 HOH HOH . C 3 HOH A 115 536 205 HOH HOH . C 3 HOH A 116 537 206 HOH HOH . C 3 HOH A 117 538 207 HOH HOH . C 3 HOH A 118 539 208 HOH HOH . C 3 HOH A 119 540 209 HOH HOH . C 3 HOH A 120 541 210 HOH HOH . C 3 HOH A 121 542 211 HOH HOH . C 3 HOH A 122 543 212 HOH HOH . C 3 HOH A 123 544 213 HOH HOH . C 3 HOH A 124 545 214 HOH HOH . C 3 HOH A 125 546 217 HOH HOH . C 3 HOH A 126 547 218 HOH HOH . C 3 HOH A 127 548 219 HOH HOH . C 3 HOH A 128 549 220 HOH HOH . C 3 HOH A 129 550 221 HOH HOH . C 3 HOH A 130 551 222 HOH HOH . C 3 HOH A 131 552 223 HOH HOH . C 3 HOH A 132 553 224 HOH HOH . C 3 HOH A 133 554 225 HOH HOH . C 3 HOH A 134 555 226 HOH HOH . C 3 HOH A 135 556 227 HOH HOH . C 3 HOH A 136 557 228 HOH HOH . C 3 HOH A 137 558 229 HOH HOH . C 3 HOH A 138 559 230 HOH HOH . C 3 HOH A 139 560 231 HOH HOH . C 3 HOH A 140 561 232 HOH HOH . C 3 HOH A 141 562 233 HOH HOH . C 3 HOH A 142 563 234 HOH HOH . C 3 HOH A 143 564 235 HOH HOH . C 3 HOH A 144 565 236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 D1D . . . B 2 4.486 -27.193 2.312 1 54.2 ? S1 D1D 2815 A 1 HETATM 2 C C1 D1D . . . B 2 5.871 -26.717 1.34 1 53.4 ? C1 D1D 2815 A 1 HETATM 3 C C2 D1D . . . B 2 6.064 -25.21 1.463 1 53.02 ? C2 D1D 2815 A 1 HETATM 4 O O2 D1D . . . B 2 7.241 -24.878 0.726 1 53.52 ? O2 D1D 2815 A 1 HETATM 5 C C3 D1D . . . B 2 4.913 -24.379 0.894 1 53.14 ? C3 D1D 2815 A 1 HETATM 6 O O3 D1D . . . B 2 5.237 -23.009 1.133 1 53.05 ? O3 D1D 2815 A 1 HETATM 7 C C4 D1D . . . B 2 3.547 -24.655 1.523 1 53.26 ? C4 D1D 2815 A 1 HETATM 8 S S4 D1D . . . B 2 3.059 -26.323 1.215 1 55.09 ? S4 D1D 2815 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #