data_3UF3 # _model_server_result.job_id oKqvZRxmsrJS-wXYhkTvWQ _model_server_result.datetime_utc '2024-11-30 00:07:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 3UF3 # _exptl.entry_id 3UF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.906 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTRIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UF3 _cell.length_a 44.343 _cell.length_b 45.848 _cell.length_c 103.987 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 34 A GLU 34 1_555 C Y Y1 . A Y1 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 A OE2 GLU 34 A GLU 34 1_555 C Y Y1 . A Y1 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc3 A OE1 GLU 34 A GLU 34 1_555 C Y Y1 . A Y1 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc4 A OE1 GLU 34 A GLU 34 1_555 C Y Y1 . A Y1 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc5 C Y Y1 . A Y1 201 1_555 F O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc6 C Y Y1 . A Y1 201 1_555 F O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.334 ? metalc ? metalc7 D Y Y1 . B Y1 202 1_555 G O HOH . B HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc8 D Y Y1 . B Y1 202 1_555 G O HOH . B HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? # _chem_comp.formula 'Y 2' _chem_comp.formula_weight 88.906 _chem_comp.id Y1 _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTRIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3UF3 _atom_sites.fract_transf_matrix[1][1] 0.022551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y1 A 1 201 201 Y1 Y1 . D 2 Y1 B 1 202 202 Y1 Y1 . E 3 GOL B 1 210 210 GOL GOL . F 4 HOH A 1 302 302 HOH HOH . F 4 HOH A 2 303 303 HOH HOH . F 4 HOH A 3 311 311 HOH HOH . F 4 HOH A 4 313 313 HOH HOH . F 4 HOH A 5 315 315 HOH HOH . F 4 HOH A 6 316 316 HOH HOH . F 4 HOH A 7 319 319 HOH HOH . F 4 HOH A 8 321 321 HOH HOH . F 4 HOH A 9 322 322 HOH HOH . F 4 HOH A 10 323 323 HOH HOH . F 4 HOH A 11 326 326 HOH HOH . F 4 HOH A 12 327 327 HOH HOH . F 4 HOH A 13 331 331 HOH HOH . F 4 HOH A 14 332 332 HOH HOH . F 4 HOH A 15 333 333 HOH HOH . F 4 HOH A 16 334 334 HOH HOH . F 4 HOH A 17 335 335 HOH HOH . F 4 HOH A 18 337 337 HOH HOH . F 4 HOH A 19 338 338 HOH HOH . F 4 HOH A 20 340 340 HOH HOH . F 4 HOH A 21 344 344 HOH HOH . F 4 HOH A 22 346 346 HOH HOH . F 4 HOH A 23 348 348 HOH HOH . F 4 HOH A 24 350 350 HOH HOH . F 4 HOH A 25 353 353 HOH HOH . F 4 HOH A 26 354 354 HOH HOH . F 4 HOH A 27 355 355 HOH HOH . F 4 HOH A 28 357 357 HOH HOH . F 4 HOH A 29 358 358 HOH HOH . F 4 HOH A 30 360 360 HOH HOH . F 4 HOH A 31 361 361 HOH HOH . F 4 HOH A 32 363 363 HOH HOH . F 4 HOH A 33 364 364 HOH HOH . F 4 HOH A 34 365 365 HOH HOH . F 4 HOH A 35 366 366 HOH HOH . F 4 HOH A 36 368 368 HOH HOH . F 4 HOH A 37 370 370 HOH HOH . F 4 HOH A 38 372 372 HOH HOH . F 4 HOH A 39 375 375 HOH HOH . F 4 HOH A 40 377 377 HOH HOH . F 4 HOH A 41 381 381 HOH HOH . F 4 HOH A 42 386 386 HOH HOH . F 4 HOH A 43 389 389 HOH HOH . F 4 HOH A 44 390 390 HOH HOH . F 4 HOH A 45 391 391 HOH HOH . F 4 HOH A 46 392 392 HOH HOH . F 4 HOH A 47 393 393 HOH HOH . F 4 HOH A 48 396 396 HOH HOH . F 4 HOH A 49 399 399 HOH HOH . F 4 HOH A 50 401 401 HOH HOH . F 4 HOH A 51 403 403 HOH HOH . F 4 HOH A 52 404 404 HOH HOH . F 4 HOH A 53 405 405 HOH HOH . F 4 HOH A 54 409 409 HOH HOH . F 4 HOH A 55 412 412 HOH HOH . F 4 HOH A 56 413 413 HOH HOH . F 4 HOH A 57 414 414 HOH HOH . F 4 HOH A 58 417 417 HOH HOH . F 4 HOH A 59 418 418 HOH HOH . F 4 HOH A 60 419 419 HOH HOH . F 4 HOH A 61 422 422 HOH HOH . F 4 HOH A 62 423 423 HOH HOH . F 4 HOH A 63 424 424 HOH HOH . F 4 HOH A 64 426 426 HOH HOH . F 4 HOH A 65 437 437 HOH HOH . F 4 HOH A 66 439 439 HOH HOH . F 4 HOH A 67 440 440 HOH HOH . F 4 HOH A 68 441 441 HOH HOH . F 4 HOH A 69 442 442 HOH HOH . F 4 HOH A 70 443 443 HOH HOH . F 4 HOH A 71 445 445 HOH HOH . F 4 HOH A 72 446 446 HOH HOH . F 4 HOH A 73 447 447 HOH HOH . F 4 HOH A 74 448 448 HOH HOH . F 4 HOH A 75 449 449 HOH HOH . F 4 HOH A 76 451 451 HOH HOH . F 4 HOH A 77 454 454 HOH HOH . F 4 HOH A 78 455 455 HOH HOH . F 4 HOH A 79 456 456 HOH HOH . F 4 HOH A 80 457 457 HOH HOH . F 4 HOH A 81 458 458 HOH HOH . F 4 HOH A 82 459 459 HOH HOH . F 4 HOH A 83 460 460 HOH HOH . F 4 HOH A 84 461 461 HOH HOH . G 4 HOH B 1 301 301 HOH HOH . G 4 HOH B 2 304 304 HOH HOH . G 4 HOH B 3 305 305 HOH HOH . G 4 HOH B 4 306 306 HOH HOH . G 4 HOH B 5 307 307 HOH HOH . G 4 HOH B 6 308 308 HOH HOH . G 4 HOH B 7 309 309 HOH HOH . G 4 HOH B 8 310 310 HOH HOH . G 4 HOH B 9 312 312 HOH HOH . G 4 HOH B 10 314 314 HOH HOH . G 4 HOH B 11 317 317 HOH HOH . G 4 HOH B 12 318 318 HOH HOH . G 4 HOH B 13 320 320 HOH HOH . G 4 HOH B 14 324 324 HOH HOH . G 4 HOH B 15 325 325 HOH HOH . G 4 HOH B 16 328 328 HOH HOH . G 4 HOH B 17 329 329 HOH HOH . G 4 HOH B 18 330 330 HOH HOH . G 4 HOH B 19 336 336 HOH HOH . G 4 HOH B 20 339 339 HOH HOH . G 4 HOH B 21 341 341 HOH HOH . G 4 HOH B 22 342 342 HOH HOH . G 4 HOH B 23 343 343 HOH HOH . G 4 HOH B 24 345 345 HOH HOH . G 4 HOH B 25 347 347 HOH HOH . G 4 HOH B 26 349 349 HOH HOH . G 4 HOH B 27 351 351 HOH HOH . G 4 HOH B 28 352 352 HOH HOH . G 4 HOH B 29 356 356 HOH HOH . G 4 HOH B 30 362 362 HOH HOH . G 4 HOH B 31 367 367 HOH HOH . G 4 HOH B 32 369 369 HOH HOH . G 4 HOH B 33 371 371 HOH HOH . G 4 HOH B 34 373 373 HOH HOH . G 4 HOH B 35 374 374 HOH HOH . G 4 HOH B 36 376 376 HOH HOH . G 4 HOH B 37 378 378 HOH HOH . G 4 HOH B 38 379 379 HOH HOH . G 4 HOH B 39 380 380 HOH HOH . G 4 HOH B 40 382 382 HOH HOH . G 4 HOH B 41 383 383 HOH HOH . G 4 HOH B 42 384 384 HOH HOH . G 4 HOH B 43 385 385 HOH HOH . G 4 HOH B 44 387 387 HOH HOH . G 4 HOH B 45 388 388 HOH HOH . G 4 HOH B 46 394 394 HOH HOH . G 4 HOH B 47 395 395 HOH HOH . G 4 HOH B 48 397 397 HOH HOH . G 4 HOH B 49 398 398 HOH HOH . G 4 HOH B 50 400 400 HOH HOH . G 4 HOH B 51 406 406 HOH HOH . G 4 HOH B 52 407 407 HOH HOH . G 4 HOH B 53 408 408 HOH HOH . G 4 HOH B 54 410 410 HOH HOH . G 4 HOH B 55 411 411 HOH HOH . G 4 HOH B 56 415 415 HOH HOH . G 4 HOH B 57 420 420 HOH HOH . G 4 HOH B 58 421 421 HOH HOH . G 4 HOH B 59 425 425 HOH HOH . G 4 HOH B 60 427 427 HOH HOH . G 4 HOH B 61 428 428 HOH HOH . G 4 HOH B 62 430 430 HOH HOH . G 4 HOH B 63 431 431 HOH HOH . G 4 HOH B 64 432 432 HOH HOH . G 4 HOH B 65 434 434 HOH HOH . G 4 HOH B 66 435 435 HOH HOH . G 4 HOH B 67 436 436 HOH HOH . G 4 HOH B 68 438 438 HOH HOH . G 4 HOH B 69 444 444 HOH HOH . G 4 HOH B 70 450 450 HOH HOH . G 4 HOH B 71 452 452 HOH HOH . G 4 HOH B 72 453 453 HOH HOH . G 4 HOH B 73 462 462 HOH HOH . G 4 HOH B 74 463 463 HOH HOH . G 4 HOH B 75 464 464 HOH HOH . G 4 HOH B 76 465 465 HOH HOH . G 4 HOH B 77 466 466 HOH HOH . G 4 HOH B 78 467 467 HOH HOH . G 4 HOH B 79 468 468 HOH HOH . G 4 HOH B 80 469 469 HOH HOH . G 4 HOH B 81 470 470 HOH HOH . G 4 HOH B 82 471 471 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol Y _atom_site.label_atom_id Y _atom_site.label_comp_id Y1 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.536 _atom_site.Cartn_y -6.852 _atom_site.Cartn_z -13.452 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 39.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id Y _atom_site.auth_comp_id Y1 _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #