data_3UF4 # _model_server_result.job_id gh8nAMoRdWE8qA3Xlu457A _model_server_result.datetime_utc '2024-11-21 22:47:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 3UF4 # _exptl.entry_id 3UF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.56 _cell.angle_gamma 90 _cell.entry_id 3UF4 _cell.length_a 138.22 _cell.length_b 35.96 _cell.length_c 43.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 114 A ASP 194 1_555 A N MSE 115 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale2 A C MSE 115 A MSE 195 1_555 A N LYS 116 A LYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 A O GLN 65 A GLN 145 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc2 A O GLU 67 A GLU 147 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc3 A O TYR 70 A TYR 150 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc4 B NA NA . A NA 601 1_555 G O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc5 B NA NA . A NA 601 1_555 G O HOH . A HOH 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc6 B NA NA . A NA 601 1_555 G O HOH . A HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3UF4 _atom_sites.fract_transf_matrix[1][1] 0.007235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00045 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 601 NA NA . C 3 CL A 1 602 602 CL CL . D 3 CL A 1 603 603 CL CL . E 4 GOL A 1 604 604 GOL GOL . F 4 GOL A 1 605 605 GOL GOL . G 5 HOH A 1 606 606 HOH HOH . G 5 HOH A 2 607 607 HOH HOH . G 5 HOH A 3 608 608 HOH HOH . G 5 HOH A 4 609 609 HOH HOH . G 5 HOH A 5 610 610 HOH HOH . G 5 HOH A 6 611 611 HOH HOH . G 5 HOH A 7 612 612 HOH HOH . G 5 HOH A 8 613 613 HOH HOH . G 5 HOH A 9 614 614 HOH HOH . G 5 HOH A 10 615 615 HOH HOH . G 5 HOH A 11 616 616 HOH HOH . G 5 HOH A 12 617 617 HOH HOH . G 5 HOH A 13 618 618 HOH HOH . G 5 HOH A 14 619 619 HOH HOH . G 5 HOH A 15 620 620 HOH HOH . G 5 HOH A 16 621 621 HOH HOH . G 5 HOH A 17 622 622 HOH HOH . G 5 HOH A 18 623 623 HOH HOH . G 5 HOH A 19 624 624 HOH HOH . G 5 HOH A 20 625 625 HOH HOH . G 5 HOH A 21 626 626 HOH HOH . G 5 HOH A 22 627 627 HOH HOH . G 5 HOH A 23 628 628 HOH HOH . G 5 HOH A 24 629 629 HOH HOH . G 5 HOH A 25 630 630 HOH HOH . G 5 HOH A 26 631 631 HOH HOH . G 5 HOH A 27 632 632 HOH HOH . G 5 HOH A 28 633 633 HOH HOH . G 5 HOH A 29 634 634 HOH HOH . G 5 HOH A 30 635 635 HOH HOH . G 5 HOH A 31 636 636 HOH HOH . G 5 HOH A 32 637 637 HOH HOH . G 5 HOH A 33 638 638 HOH HOH . G 5 HOH A 34 639 639 HOH HOH . G 5 HOH A 35 640 640 HOH HOH . G 5 HOH A 36 641 641 HOH HOH . G 5 HOH A 37 642 642 HOH HOH . G 5 HOH A 38 643 643 HOH HOH . G 5 HOH A 39 644 644 HOH HOH . G 5 HOH A 40 645 645 HOH HOH . G 5 HOH A 41 646 646 HOH HOH . G 5 HOH A 42 647 647 HOH HOH . G 5 HOH A 43 648 648 HOH HOH . G 5 HOH A 44 649 649 HOH HOH . G 5 HOH A 45 650 650 HOH HOH . G 5 HOH A 46 651 651 HOH HOH . G 5 HOH A 47 652 652 HOH HOH . G 5 HOH A 48 653 653 HOH HOH . G 5 HOH A 49 654 654 HOH HOH . G 5 HOH A 50 655 655 HOH HOH . G 5 HOH A 51 656 656 HOH HOH . G 5 HOH A 52 657 657 HOH HOH . G 5 HOH A 53 658 658 HOH HOH . G 5 HOH A 54 659 659 HOH HOH . G 5 HOH A 55 660 660 HOH HOH . G 5 HOH A 56 661 661 HOH HOH . G 5 HOH A 57 662 662 HOH HOH . G 5 HOH A 58 663 663 HOH HOH . G 5 HOH A 59 664 664 HOH HOH . G 5 HOH A 60 665 665 HOH HOH . G 5 HOH A 61 666 666 HOH HOH . G 5 HOH A 62 667 667 HOH HOH . G 5 HOH A 63 668 668 HOH HOH . G 5 HOH A 64 669 669 HOH HOH . G 5 HOH A 65 670 670 HOH HOH . G 5 HOH A 66 671 671 HOH HOH . G 5 HOH A 67 672 672 HOH HOH . G 5 HOH A 68 673 673 HOH HOH . G 5 HOH A 69 674 674 HOH HOH . G 5 HOH A 70 675 675 HOH HOH . G 5 HOH A 71 676 676 HOH HOH . G 5 HOH A 72 677 677 HOH HOH . G 5 HOH A 73 678 678 HOH HOH . G 5 HOH A 74 679 679 HOH HOH . G 5 HOH A 75 680 680 HOH HOH . G 5 HOH A 76 681 681 HOH HOH . G 5 HOH A 77 682 682 HOH HOH . G 5 HOH A 78 683 683 HOH HOH . G 5 HOH A 79 684 684 HOH HOH . G 5 HOH A 80 685 685 HOH HOH . G 5 HOH A 81 686 686 HOH HOH . G 5 HOH A 82 687 687 HOH HOH . G 5 HOH A 83 688 688 HOH HOH . G 5 HOH A 84 689 689 HOH HOH . G 5 HOH A 85 690 690 HOH HOH . G 5 HOH A 86 691 691 HOH HOH . G 5 HOH A 87 692 692 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 33.438 3.007 3.361 1 77.09 ? C1 GOL 605 A 1 HETATM 2 O O1 GOL . . . F 4 33.364 4.002 4.375 1 76.77 ? O1 GOL 605 A 1 HETATM 3 C C2 GOL . . . F 4 33.41 1.613 3.945 1 77.54 ? C2 GOL 605 A 1 HETATM 4 O O2 GOL . . . F 4 33.38 0.658 2.882 1 78.67 ? O2 GOL 605 A 1 HETATM 5 C C3 GOL . . . F 4 34.612 1.343 4.82 1 77.07 ? C3 GOL 605 A 1 HETATM 6 O O3 GOL . . . F 4 34.588 0.009 5.316 1 76.9 ? O3 GOL 605 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #