data_3UFN # _model_server_result.job_id jniEoZ6_i8fseCzWTtN5aA _model_server_result.datetime_utc '2024-11-14 05:26:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ufn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3UFN # _exptl.entry_id 3UFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 670.841 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UFN _cell.length_a 28.83 _cell.length_b 66.26 _cell.length_c 93.167 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C38 H50 N6 O5' _chem_comp.formula_weight 670.841 _chem_comp.id ROC _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'Fortovase;SAQUINAVIR;RO 31-8959' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C ROC doub 277 n n C C2 ROC sing 278 n n N1 C2 ROC doub 279 n y N1 C8A ROC sing 280 n y C2 C3 ROC sing 281 n y C3 C4 ROC doub 282 n y C3 H3 ROC sing 283 n n C4 C4A ROC sing 284 n y C4 H4 ROC sing 285 n n C4A C5 ROC doub 286 n y C4A C8A ROC sing 287 n y C5 C6 ROC sing 288 n y C5 H5 ROC sing 289 n n C6 C7 ROC doub 290 n y C6 H6 ROC sing 291 n n C7 C8 ROC sing 292 n y C7 H7 ROC sing 293 n n C8 C8A ROC doub 294 n y C8 H8 ROC sing 295 n n N CA ROC sing 296 n n N H ROC sing 297 n n CA C1 ROC sing 298 n n CA CB ROC sing 299 n n CA HA ROC sing 300 n n C1 O1 ROC doub 301 n n CB CG ROC sing 302 n n CB HB2 ROC sing 303 n n CB HB3 ROC sing 304 n n CG OD1 ROC doub 305 n n CG ND2 ROC sing 306 n n ND2 HD21 ROC sing 307 n n ND2 HD22 ROC sing 308 n n C9 O2 ROC sing 309 n n C9 CA1 ROC sing 310 n n C9 HC ROC sing 311 n n O2 HO ROC sing 312 n n CA1 N2 ROC sing 313 n n CA1 CB1 ROC sing 314 n n CA1 HA1 ROC sing 315 n n N2 H1 ROC sing 316 n n CB1 CG1 ROC sing 317 n n CB1 HB21 ROC sing 318 n n CB1 HB31 ROC sing 319 n n CG1 CD1 ROC doub 320 n y CG1 CD2 ROC sing 321 n y CD1 CE1 ROC sing 322 n y CD1 HD1 ROC sing 323 n n CD2 CE2 ROC doub 324 n y CD2 HD2 ROC sing 325 n n CE1 CZ ROC doub 326 n y CE1 HE1 ROC sing 327 n n CE2 CZ ROC sing 328 n y CE2 HE2 ROC sing 329 n n CZ HZ ROC sing 330 n n N11 CM ROC sing 331 n n N11 C21 ROC sing 332 n n N11 C81 ROC sing 333 n n CM HM1 ROC sing 334 n n CM HM2 ROC sing 335 n n C21 CC ROC sing 336 n n C21 C31 ROC sing 337 n n C21 H2 ROC sing 338 n n CC O3 ROC doub 339 n n C31 C3A ROC sing 340 n n C31 H31 ROC sing 341 n n C31 H32 ROC sing 342 n n C3A C41 ROC sing 343 n n C3A C7A ROC sing 344 n n C3A H3A ROC sing 345 n n C41 C51 ROC sing 346 n n C41 H41 ROC sing 347 n n C41 H42 ROC sing 348 n n C51 C61 ROC sing 349 n n C51 H51 ROC sing 350 n n C51 H52 ROC sing 351 n n C61 C71 ROC sing 352 n n C61 H61 ROC sing 353 n n C61 H62 ROC sing 354 n n C71 C7A ROC sing 355 n n C71 H71 ROC sing 356 n n C71 H72 ROC sing 357 n n C7A C81 ROC sing 358 n n C7A H7A ROC sing 359 n n C81 H81 ROC sing 360 n n C81 H82 ROC sing 361 n n N3 CD ROC sing 362 n n N3 HN1 ROC sing 363 n n CD C11 ROC sing 364 n n CD C22 ROC sing 365 n n CD C32 ROC sing 366 n n C11 H11 ROC sing 367 n n C11 H12 ROC sing 368 n n C11 H13 ROC sing 369 n n C22 H21 ROC sing 370 n n C22 H22 ROC sing 371 n n C22 H23 ROC sing 372 n n C32 H311 ROC sing 373 n n C32 H321 ROC sing 374 n n C32 H33 ROC sing 375 n n C N ROC sing 376 n n C1 N2 ROC sing 377 n n C9 CM ROC sing 378 n n CC N3 ROC sing 379 n n # _atom_sites.entry_id 3UFN _atom_sites.fract_transf_matrix[1][1] 0.034686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ROC A 1 401 401 ROC ROC . D 2 ROC A 1 402 402 ROC ROC . E 3 CL B 1 100 500 CL CL . F 3 CL B 1 101 501 CL CL . G 4 HOH A 1 501 1002 HOH HOH . G 4 HOH A 2 502 1003 HOH HOH . G 4 HOH A 3 503 1004 HOH HOH . G 4 HOH A 4 504 1005 HOH HOH . G 4 HOH A 5 505 1006 HOH HOH . G 4 HOH A 6 506 1007 HOH HOH . G 4 HOH A 7 507 1008 HOH HOH . G 4 HOH A 8 508 1009 HOH HOH . G 4 HOH A 9 509 1014 HOH HOH . G 4 HOH A 10 510 1017 HOH HOH . G 4 HOH A 11 511 1018 HOH HOH . G 4 HOH A 12 512 1019 HOH HOH . G 4 HOH A 13 513 1020 HOH HOH . G 4 HOH A 14 514 1021 HOH HOH . G 4 HOH A 15 515 1022 HOH HOH . G 4 HOH A 16 516 1023 HOH HOH . G 4 HOH A 17 517 1024 HOH HOH . G 4 HOH A 18 518 1025 HOH HOH . G 4 HOH A 19 519 1026 HOH HOH . G 4 HOH A 20 520 1027 HOH HOH . G 4 HOH A 21 521 1029 HOH HOH . G 4 HOH A 22 522 1031 HOH HOH . G 4 HOH A 23 523 1032 HOH HOH . G 4 HOH A 24 524 1034 HOH HOH . G 4 HOH A 25 525 1035 HOH HOH . G 4 HOH A 26 526 1036 HOH HOH . G 4 HOH A 27 527 1037 HOH HOH . G 4 HOH A 28 528 1038 HOH HOH . G 4 HOH A 29 529 1041 HOH HOH . G 4 HOH A 30 530 1042 HOH HOH . G 4 HOH A 31 531 1043 HOH HOH . G 4 HOH A 32 532 1045 HOH HOH . G 4 HOH A 33 533 1046 HOH HOH . G 4 HOH A 34 534 1047 HOH HOH . G 4 HOH A 35 535 1048 HOH HOH . G 4 HOH A 36 536 1049 HOH HOH . G 4 HOH A 37 537 1050 HOH HOH . G 4 HOH A 38 538 1051 HOH HOH . G 4 HOH A 39 539 1052 HOH HOH . G 4 HOH A 40 540 1054 HOH HOH . G 4 HOH A 41 541 1055 HOH HOH . G 4 HOH A 42 542 1056 HOH HOH . G 4 HOH A 43 543 1057 HOH HOH . G 4 HOH A 44 544 1058 HOH HOH . G 4 HOH A 45 545 1059 HOH HOH . G 4 HOH A 46 546 1060 HOH HOH . G 4 HOH A 47 547 1061 HOH HOH . G 4 HOH A 48 548 1068 HOH HOH . G 4 HOH A 49 549 1076 HOH HOH . G 4 HOH A 50 550 1077 HOH HOH . G 4 HOH A 51 551 1078 HOH HOH . G 4 HOH A 52 552 1079 HOH HOH . G 4 HOH A 53 553 1080 HOH HOH . G 4 HOH A 54 554 1081 HOH HOH . G 4 HOH A 55 555 1084 HOH HOH . G 4 HOH A 56 556 1086 HOH HOH . G 4 HOH A 57 557 1087 HOH HOH . G 4 HOH A 58 558 1088 HOH HOH . G 4 HOH A 59 559 1089 HOH HOH . G 4 HOH A 60 560 1090 HOH HOH . G 4 HOH A 61 561 1104 HOH HOH . G 4 HOH A 62 562 1105 HOH HOH . G 4 HOH A 63 563 1106 HOH HOH . G 4 HOH A 64 564 1107 HOH HOH . G 4 HOH A 65 565 1111 HOH HOH . G 4 HOH A 66 566 1121 HOH HOH . G 4 HOH A 67 567 1123 HOH HOH . G 4 HOH A 68 568 1124 HOH HOH . G 4 HOH A 69 569 1125 HOH HOH . H 4 HOH B 1 201 1000 HOH HOH . H 4 HOH B 2 202 1001 HOH HOH . H 4 HOH B 3 203 1010 HOH HOH . H 4 HOH B 4 204 1011 HOH HOH . H 4 HOH B 5 205 1012 HOH HOH . H 4 HOH B 6 206 1013 HOH HOH . H 4 HOH B 7 207 1015 HOH HOH . H 4 HOH B 8 208 1016 HOH HOH . H 4 HOH B 9 209 1028 HOH HOH . H 4 HOH B 10 210 1030 HOH HOH . H 4 HOH B 11 211 1033 HOH HOH . H 4 HOH B 12 212 1039 HOH HOH . H 4 HOH B 13 213 1040 HOH HOH . H 4 HOH B 14 214 1044 HOH HOH . H 4 HOH B 15 215 1053 HOH HOH . H 4 HOH B 16 216 1062 HOH HOH . H 4 HOH B 17 217 1063 HOH HOH . H 4 HOH B 18 218 1064 HOH HOH . H 4 HOH B 19 219 1065 HOH HOH . H 4 HOH B 20 220 1066 HOH HOH . H 4 HOH B 21 221 1067 HOH HOH . H 4 HOH B 22 222 1069 HOH HOH . H 4 HOH B 23 223 1070 HOH HOH . H 4 HOH B 24 224 1071 HOH HOH . H 4 HOH B 25 225 1072 HOH HOH . H 4 HOH B 26 226 1073 HOH HOH . H 4 HOH B 27 227 1074 HOH HOH . H 4 HOH B 28 228 1075 HOH HOH . H 4 HOH B 29 229 1082 HOH HOH . H 4 HOH B 30 230 1083 HOH HOH . H 4 HOH B 31 231 1085 HOH HOH . H 4 HOH B 32 232 1091 HOH HOH . H 4 HOH B 33 233 1092 HOH HOH . H 4 HOH B 34 234 1093 HOH HOH . H 4 HOH B 35 235 1094 HOH HOH . H 4 HOH B 36 236 1095 HOH HOH . H 4 HOH B 37 237 1096 HOH HOH . H 4 HOH B 38 238 1097 HOH HOH . H 4 HOH B 39 239 1098 HOH HOH . H 4 HOH B 40 240 1099 HOH HOH . H 4 HOH B 41 241 1100 HOH HOH . H 4 HOH B 42 242 1101 HOH HOH . H 4 HOH B 43 243 1102 HOH HOH . H 4 HOH B 44 244 1103 HOH HOH . H 4 HOH B 45 245 1108 HOH HOH . H 4 HOH B 46 246 1109 HOH HOH . H 4 HOH B 47 247 1110 HOH HOH . H 4 HOH B 48 248 1112 HOH HOH . H 4 HOH B 49 249 1113 HOH HOH . H 4 HOH B 50 250 1114 HOH HOH . H 4 HOH B 51 251 1115 HOH HOH . H 4 HOH B 52 252 1116 HOH HOH . H 4 HOH B 53 253 1117 HOH HOH . H 4 HOH B 54 254 1118 HOH HOH . H 4 HOH B 55 255 1119 HOH HOH . H 4 HOH B 56 256 1120 HOH HOH . H 4 HOH B 57 257 1122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ROC . . . C 2 8.501 -7.57 -4.942 1 8.9 ? C ROC 401 A 1 HETATM 2 O O ROC . . . C 2 8.562 -6.372 -4.552 1 10.73 ? O ROC 401 A 1 HETATM 3 N N1 ROC . . . C 2 7.231 -9.569 -5.417 1 11.19 ? N1 ROC 401 A 1 HETATM 4 C C2 ROC . . . C 2 7.215 -8.264 -5.061 1 11 ? C2 ROC 401 A 1 HETATM 5 C C3 ROC . . . C 2 5.994 -7.58 -4.974 1 11.42 ? C3 ROC 401 A 1 HETATM 6 C C4 ROC . . . C 2 4.797 -8.249 -5.229 1 14.98 ? C4 ROC 401 A 1 HETATM 7 C C5 ROC . . . C 2 3.681 -10.296 -5.946 1 19.44 ? C5 ROC 401 A 1 HETATM 8 C C6 ROC . . . C 2 3.805 -11.637 -6.272 1 18.34 ? C6 ROC 401 A 1 HETATM 9 C C7 ROC . . . C 2 5.048 -12.263 -6.258 1 13.85 ? C7 ROC 401 A 1 HETATM 10 C C8 ROC . . . C 2 6.29 -11.728 -6.084 1 12.59 ? C8 ROC 401 A 1 HETATM 11 C C4A ROC . . . C 2 4.846 -9.583 -5.643 1 16.52 ? C4A ROC 401 A 1 HETATM 12 C C8A ROC . . . C 2 6.089 -10.238 -5.726 1 12.56 ? C8A ROC 401 A 1 HETATM 13 N N ROC . . . C 2 9.579 -8.271 -5.269 1 9.48 ? N ROC 401 A 1 HETATM 14 C CA ROC . . . C 2 10.942 -7.729 -5.24 1 7.17 ? CA ROC 401 A 1 HETATM 15 C C1 ROC . . . C 2 11.649 -8.052 -6.569 1 7.69 ? C1 ROC 401 A 1 HETATM 16 O O1 ROC . . . C 2 12.174 -9.148 -6.758 1 10.82 ? O1 ROC 401 A 1 HETATM 17 C CB ROC . . . C 2 11.749 -8.323 -4.1 1 8.54 ? CB ROC 401 A 1 HETATM 18 C CG ROC . . . C 2 11.059 -7.973 -2.829 1 12.43 ? CG ROC 401 A 1 HETATM 19 O OD1 ROC . . . C 2 11.186 -6.853 -2.313 1 14.6 ? OD1 ROC 401 A 1 HETATM 20 N ND2 ROC . . . C 2 10.276 -8.823 -2.225 1 14.89 ? ND2 ROC 401 A 1 HETATM 21 C C9 ROC . . . C 2 13.321 -6.137 -8.943 1 8.59 ? C9 ROC 401 A 1 HETATM 22 O O2 ROC . . . C 2 12.819 -4.815 -8.928 1 10 ? O2 ROC 401 A 1 HETATM 23 C CA1 ROC . . . C 2 12.165 -7.14 -8.774 1 8.44 ? CA1 ROC 401 A 1 HETATM 24 N N2 ROC . . . C 2 11.634 -7.005 -7.426 1 8.39 ? N2 ROC 401 A 1 HETATM 25 C CB1 ROC . . . C 2 11.044 -6.975 -9.804 1 10.12 ? CB1 ROC 401 A 1 HETATM 26 C CG1 ROC . . . C 2 9.848 -7.869 -9.472 1 10.63 ? CG1 ROC 401 A 1 HETATM 27 C CD1 ROC . . . C 2 9.837 -9.206 -9.847 1 10.65 ? CD1 ROC 401 A 1 HETATM 28 C CD2 ROC . . . C 2 8.744 -7.344 -8.793 1 12.08 ? CD2 ROC 401 A 1 HETATM 29 C CE1 ROC . . . C 2 8.758 -10.006 -9.52 1 11.28 ? CE1 ROC 401 A 1 HETATM 30 C CE2 ROC . . . C 2 7.658 -8.146 -8.485 1 11.66 ? CE2 ROC 401 A 1 HETATM 31 C CZ ROC . . . C 2 7.666 -9.5 -8.816 1 11.42 ? CZ ROC 401 A 1 HETATM 32 N N11 ROC . . . C 2 15.188 -7.307 -9.94 1 10.64 ? N11 ROC 401 A 1 HETATM 33 C CM ROC . . . C 2 14.165 -6.332 -10.191 1 10.02 ? CM ROC 401 A 1 HETATM 34 C C21 ROC . . . C 2 15.532 -8.109 -11.161 1 9.94 ? C21 ROC 401 A 1 HETATM 35 C CC ROC . . . C 2 14.304 -8.762 -11.837 1 9.29 ? CC ROC 401 A 1 HETATM 36 O O3 ROC . . . C 2 13.504 -9.448 -11.158 1 10.67 ? O3 ROC 401 A 1 HETATM 37 C C31 ROC . . . C 2 16.503 -9.203 -10.724 1 11.28 ? C31 ROC 401 A 1 HETATM 38 C C3A ROC . . . C 2 17.732 -8.652 -10.048 1 13.84 ? C3A ROC 401 A 1 HETATM 39 C C41 ROC . . . C 2 18.673 -9.749 -9.567 1 19.27 ? C41 ROC 401 A 1 HETATM 40 C C51 ROC . . . C 2 18.236 -10.416 -8.282 1 21.07 ? C51 ROC 401 A 1 HETATM 41 C C61 ROC . . . C 2 17.984 -9.412 -7.174 1 19.23 ? C61 ROC 401 A 1 HETATM 42 C C71 ROC . . . C 2 16.911 -8.458 -7.643 1 15.8 ? C71 ROC 401 A 1 HETATM 43 C C7A ROC . . . C 2 17.389 -7.707 -8.873 1 13.49 ? C7A ROC 401 A 1 HETATM 44 C C81 ROC . . . C 2 16.381 -6.687 -9.367 1 11.33 ? C81 ROC 401 A 1 HETATM 45 N N3 ROC . . . C 2 14.176 -8.556 -13.142 1 10.5 ? N3 ROC 401 A 1 HETATM 46 C CD ROC . . . C 2 13.127 -8.993 -14.048 1 12.82 ? CD ROC 401 A 1 HETATM 47 C C11 ROC . . . C 2 13.318 -8.292 -15.396 1 21.75 ? C11 ROC 401 A 1 HETATM 48 C C22 ROC . . . C 2 13.247 -10.471 -14.298 1 18.07 ? C22 ROC 401 A 1 HETATM 49 C C32 ROC . . . C 2 11.756 -8.704 -13.499 1 12.49 ? C32 ROC 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 49 #