data_3UFT # _model_server_result.job_id 4uDvbjd4iVjqm2noaaMNAQ _model_server_result.datetime_utc '2024-11-23 15:51:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":760}' # _entry.id 3UFT # _exptl.entry_id 3UFT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UFT _cell.length_a 51.845 _cell.length_b 111.224 _cell.length_c 164.111 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc4 G ZN ZN . A ZN 900 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 G ZN ZN . A ZN 900 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 135 n y N1 C8A H4B sing 136 n y C2 N2 H4B sing 137 n n C2 N3 H4B sing 138 n y N2 HN21 H4B sing 139 n n N2 HN22 H4B sing 140 n n N3 C4 H4B sing 141 n y N3 HN3 H4B sing 142 n n C4 O4 H4B doub 143 n n C4 C4A H4B sing 144 n y C4A C8A H4B doub 145 n y C4A N5 H4B sing 146 n n C8A N8 H4B sing 147 n n N5 C6 H4B sing 148 n n N5 HN5 H4B sing 149 n n N8 C7 H4B sing 150 n n N8 HN8 H4B sing 151 n n C6 C7 H4B sing 152 n n C6 C9 H4B sing 153 n n C6 H6 H4B sing 154 n n C7 H71 H4B sing 155 n n C7 H72 H4B sing 156 n n C9 O9 H4B sing 157 n n C9 C10 H4B sing 158 n n C9 H9 H4B sing 159 n n O9 HO9 H4B sing 160 n n C10 C11 H4B sing 161 n n C10 O10 H4B sing 162 n n C10 H10 H4B sing 163 n n C11 H111 H4B sing 164 n n C11 H112 H4B sing 165 n n C11 H113 H4B sing 166 n n O10 HO0 H4B sing 167 n n # _atom_sites.entry_id 3UFT _atom_sites.fract_transf_matrix[1][1] 0.019288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 750 750 HEM HEM . D 3 H4B A 1 760 760 H4B BH4 . E 4 HW7 A 1 800 800 HW7 HW7 . F 5 ACT A 1 860 860 ACT ACT . G 6 ZN A 1 900 900 ZN ZN . H 2 HEM B 1 750 750 HEM HEM . I 3 H4B B 1 760 760 H4B BH4 . J 4 HW7 B 1 800 800 HW7 HW7 . K 5 ACT B 1 860 860 ACT ACT . L 7 HOH A 1 2 2 HOH HOH . L 7 HOH A 2 4 4 HOH HOH . L 7 HOH A 3 8 8 HOH HOH . L 7 HOH A 4 11 11 HOH HOH . L 7 HOH A 5 13 13 HOH HOH . L 7 HOH A 6 14 14 HOH HOH . L 7 HOH A 7 15 15 HOH HOH . L 7 HOH A 8 21 21 HOH HOH . L 7 HOH A 9 23 23 HOH HOH . L 7 HOH A 10 24 24 HOH HOH . L 7 HOH A 11 26 26 HOH HOH . L 7 HOH A 12 27 27 HOH HOH . L 7 HOH A 13 30 30 HOH HOH . L 7 HOH A 14 32 32 HOH HOH . L 7 HOH A 15 35 35 HOH HOH . L 7 HOH A 16 41 41 HOH HOH . L 7 HOH A 17 46 46 HOH HOH . L 7 HOH A 18 47 47 HOH HOH . L 7 HOH A 19 48 48 HOH HOH . L 7 HOH A 20 49 49 HOH HOH . L 7 HOH A 21 54 54 HOH HOH . L 7 HOH A 22 55 55 HOH HOH . L 7 HOH A 23 57 57 HOH HOH . L 7 HOH A 24 61 61 HOH HOH . L 7 HOH A 25 64 64 HOH HOH . L 7 HOH A 26 68 68 HOH HOH . L 7 HOH A 27 71 71 HOH HOH . L 7 HOH A 28 73 73 HOH HOH . L 7 HOH A 29 74 74 HOH HOH . L 7 HOH A 30 75 75 HOH HOH . L 7 HOH A 31 77 77 HOH HOH . L 7 HOH A 32 79 79 HOH HOH . L 7 HOH A 33 80 80 HOH HOH . L 7 HOH A 34 86 86 HOH HOH . L 7 HOH A 35 92 92 HOH HOH . L 7 HOH A 36 94 94 HOH HOH . L 7 HOH A 37 95 95 HOH HOH . L 7 HOH A 38 100 100 HOH HOH . L 7 HOH A 39 101 101 HOH HOH . L 7 HOH A 40 102 102 HOH HOH . L 7 HOH A 41 106 106 HOH HOH . L 7 HOH A 42 107 107 HOH HOH . L 7 HOH A 43 112 112 HOH HOH . L 7 HOH A 44 113 113 HOH HOH . L 7 HOH A 45 115 115 HOH HOH . L 7 HOH A 46 117 117 HOH HOH . L 7 HOH A 47 118 118 HOH HOH . L 7 HOH A 48 119 119 HOH HOH . L 7 HOH A 49 120 120 HOH HOH . L 7 HOH A 50 122 122 HOH HOH . L 7 HOH A 51 124 124 HOH HOH . L 7 HOH A 52 130 130 HOH HOH . L 7 HOH A 53 131 131 HOH HOH . L 7 HOH A 54 138 138 HOH HOH . L 7 HOH A 55 141 141 HOH HOH . L 7 HOH A 56 143 143 HOH HOH . L 7 HOH A 57 145 145 HOH HOH . L 7 HOH A 58 148 148 HOH HOH . L 7 HOH A 59 149 149 HOH HOH . L 7 HOH A 60 151 151 HOH HOH . L 7 HOH A 61 152 152 HOH HOH . L 7 HOH A 62 153 153 HOH HOH . L 7 HOH A 63 154 154 HOH HOH . L 7 HOH A 64 155 155 HOH HOH . L 7 HOH A 65 156 156 HOH HOH . L 7 HOH A 66 157 157 HOH HOH . L 7 HOH A 67 158 158 HOH HOH . L 7 HOH A 68 159 159 HOH HOH . L 7 HOH A 69 160 160 HOH HOH . M 7 HOH B 1 1 1 HOH HOH . M 7 HOH B 2 3 3 HOH HOH . M 7 HOH B 3 5 5 HOH HOH . M 7 HOH B 4 6 6 HOH HOH . M 7 HOH B 5 7 7 HOH HOH . M 7 HOH B 6 9 9 HOH HOH . M 7 HOH B 7 10 10 HOH HOH . M 7 HOH B 8 12 12 HOH HOH . M 7 HOH B 9 16 16 HOH HOH . M 7 HOH B 10 17 17 HOH HOH . M 7 HOH B 11 18 18 HOH HOH . M 7 HOH B 12 19 19 HOH HOH . M 7 HOH B 13 20 20 HOH HOH . M 7 HOH B 14 22 22 HOH HOH . M 7 HOH B 15 25 25 HOH HOH . M 7 HOH B 16 28 28 HOH HOH . M 7 HOH B 17 29 29 HOH HOH . M 7 HOH B 18 31 31 HOH HOH . M 7 HOH B 19 33 33 HOH HOH . M 7 HOH B 20 34 34 HOH HOH . M 7 HOH B 21 36 36 HOH HOH . M 7 HOH B 22 37 37 HOH HOH . M 7 HOH B 23 38 38 HOH HOH . M 7 HOH B 24 39 39 HOH HOH . M 7 HOH B 25 40 40 HOH HOH . M 7 HOH B 26 42 42 HOH HOH . M 7 HOH B 27 43 43 HOH HOH . M 7 HOH B 28 44 44 HOH HOH . M 7 HOH B 29 45 45 HOH HOH . M 7 HOH B 30 50 50 HOH HOH . M 7 HOH B 31 51 51 HOH HOH . M 7 HOH B 32 52 52 HOH HOH . M 7 HOH B 33 53 53 HOH HOH . M 7 HOH B 34 56 56 HOH HOH . M 7 HOH B 35 58 58 HOH HOH . M 7 HOH B 36 59 59 HOH HOH . M 7 HOH B 37 60 60 HOH HOH . M 7 HOH B 38 62 62 HOH HOH . M 7 HOH B 39 63 63 HOH HOH . M 7 HOH B 40 65 65 HOH HOH . M 7 HOH B 41 66 66 HOH HOH . M 7 HOH B 42 67 67 HOH HOH . M 7 HOH B 43 69 69 HOH HOH . M 7 HOH B 44 70 70 HOH HOH . M 7 HOH B 45 72 72 HOH HOH . M 7 HOH B 46 76 76 HOH HOH . M 7 HOH B 47 78 78 HOH HOH . M 7 HOH B 48 81 81 HOH HOH . M 7 HOH B 49 82 82 HOH HOH . M 7 HOH B 50 83 83 HOH HOH . M 7 HOH B 51 84 84 HOH HOH . M 7 HOH B 52 85 85 HOH HOH . M 7 HOH B 53 87 87 HOH HOH . M 7 HOH B 54 88 88 HOH HOH . M 7 HOH B 55 89 89 HOH HOH . M 7 HOH B 56 90 90 HOH HOH . M 7 HOH B 57 91 91 HOH HOH . M 7 HOH B 58 93 93 HOH HOH . M 7 HOH B 59 96 96 HOH HOH . M 7 HOH B 60 97 97 HOH HOH . M 7 HOH B 61 98 98 HOH HOH . M 7 HOH B 62 99 99 HOH HOH . M 7 HOH B 63 103 103 HOH HOH . M 7 HOH B 64 104 104 HOH HOH . M 7 HOH B 65 105 105 HOH HOH . M 7 HOH B 66 108 108 HOH HOH . M 7 HOH B 67 109 109 HOH HOH . M 7 HOH B 68 110 110 HOH HOH . M 7 HOH B 69 111 111 HOH HOH . M 7 HOH B 70 114 114 HOH HOH . M 7 HOH B 71 116 116 HOH HOH . M 7 HOH B 72 121 121 HOH HOH . M 7 HOH B 73 123 123 HOH HOH . M 7 HOH B 74 125 125 HOH HOH . M 7 HOH B 75 126 126 HOH HOH . M 7 HOH B 76 127 127 HOH HOH . M 7 HOH B 77 128 128 HOH HOH . M 7 HOH B 78 129 129 HOH HOH . M 7 HOH B 79 132 132 HOH HOH . M 7 HOH B 80 133 133 HOH HOH . M 7 HOH B 81 134 134 HOH HOH . M 7 HOH B 82 135 135 HOH HOH . M 7 HOH B 83 136 136 HOH HOH . M 7 HOH B 84 137 137 HOH HOH . M 7 HOH B 85 139 139 HOH HOH . M 7 HOH B 86 140 140 HOH HOH . M 7 HOH B 87 142 142 HOH HOH . M 7 HOH B 88 144 144 HOH HOH . M 7 HOH B 89 146 146 HOH HOH . M 7 HOH B 90 147 147 HOH HOH . M 7 HOH B 91 150 150 HOH HOH . M 7 HOH B 92 161 161 HOH HOH . M 7 HOH B 93 162 162 HOH HOH . M 7 HOH B 94 163 163 HOH HOH . M 7 HOH B 95 164 164 HOH HOH . M 7 HOH B 96 165 165 HOH HOH . M 7 HOH B 97 166 166 HOH HOH . M 7 HOH B 98 167 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 3 9.854 2.521 33.762 1 54.44 ? N1 H4B 760 A 1 HETATM 2 C C2 H4B . . . D 3 10.018 2.192 32.479 1 54.61 ? C2 H4B 760 A 1 HETATM 3 N N2 H4B . . . D 3 11.273 2.063 31.995 1 52.14 ? N2 H4B 760 A 1 HETATM 4 N N3 H4B . . . D 3 8.927 1.996 31.718 1 55.64 ? N3 H4B 760 A 1 HETATM 5 C C4 H4B . . . D 3 7.702 2.139 32.207 1 52.59 ? C4 H4B 760 A 1 HETATM 6 O O4 H4B . . . D 3 6.743 1.927 31.447 1 54.24 ? O4 H4B 760 A 1 HETATM 7 C C4A H4B . . . D 3 7.534 2.517 33.517 1 52.7 ? C4A H4B 760 A 1 HETATM 8 C C8A H4B . . . D 3 8.671 2.73 34.276 1 50.5 ? C8A H4B 760 A 1 HETATM 9 N N5 H4B . . . D 3 6.31 2.673 34.075 1 49.74 ? N5 H4B 760 A 1 HETATM 10 N N8 H4B . . . D 3 8.653 3.103 35.574 1 51.17 ? N8 H4B 760 A 1 HETATM 11 C C6 H4B . . . D 3 6.301 3.598 35.206 1 52.76 ? C6 H4B 760 A 1 HETATM 12 C C7 H4B . . . D 3 7.362 3.25 36.239 1 50.43 ? C7 H4B 760 A 1 HETATM 13 C C9 H4B . . . D 3 4.934 3.708 35.863 1 52.61 ? C9 H4B 760 A 1 HETATM 14 O O9 H4B . . . D 3 4.487 2.418 36.286 1 50.17 ? O9 H4B 760 A 1 HETATM 15 C C10 H4B . . . D 3 4.938 4.645 37.056 1 55.46 ? C10 H4B 760 A 1 HETATM 16 C C11 H4B . . . D 3 3.525 4.722 37.619 1 53.26 ? C11 H4B 760 A 1 HETATM 17 O O10 H4B . . . D 3 5.336 5.963 36.642 1 59.48 ? O10 H4B 760 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #